Array 1 6708-6872 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZDC01000036.1 Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 strain DSM 20004 Scaffold36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 6708 32 100.0 35 ................................ AATTCATCGACAATTGCTTTAACTTCGTCAGGCAT 6775 32 100.0 34 ................................ ACGCATATCATTTTGCGCGTTACACCAGCGTATA 6841 32 90.6 0 .................C....A......T.. | ========== ====== ====== ====== ================================ =================================== ================== 3 32 96.9 35 GTCGCACTCTATATGAGTGCGTGAATTGAAAT # Left flank : GATCTGCTTTTGTATGTAATATCTGACCATCAAATGTCAATAAGTTATCCTGCCATGCCTGTTCAATATGGATCAACGCCCACTGCCGCTGACAAAATCGAAAATGCTGAATCCCCGAGATCATCAAAAAGTCATCCTCAGTATATTCCAAATAAATCATCCCATTAATTATTTTAAAATAACAAAGTACTTAAGAATATAGTAGCAAGTATACGGCACTATGTAAACGCTTATATTTGCAGTACTGCTTGATTTAATTATTTACTTAACATAACTGGCACCGATGCAATAATGATGATAAAATTTCAATGATAGCATTAATTACCTTGGTAAAAGATTTACAAAGTGCGAGTGGAAAGTGCACATACTTTTTCAGTTTGTTTCGCACCTTAAATCACTGGTTCTTTTTTGTTTTATTGCACTTTATTGATTTTTTACTTTCCTAATTAATATTATCCACAAGATATAGAAAACAAATTATGTTAAAACTATATTTTGCG # Right flank : TTTCATTGCTAAGACTATAGAAAAGTGAGTTAAGCTTTTAAATGAAGATAATAACTACAGCTGTGAAACGGTCAAGAGTCAAATACTCATCTCTCAACTATTAAGGTACAACAAAAAATCTGCCACCAGATACCTGGTTGGCAGATTTTTTAATTACATCAAACCAAATAGATGGAACCAAGCTGCCATGACCAGCGCGACAATAAACATAACACCAGTCAATGGTATCCCTAAACGCATTACTTCTTTTTGACTGTAACCACCGGTATCGGGTTCATTGCCGACTAGAATAGCCAAATTATGGAACGGTAAAATATAGTGTAAGTTAACGACTGAGAAAACGATCAGAGAAACAGCTAACGGGCTAACGCCTAAATTAGCAGTTGCTGCAACTAACGCCGGAATCGTGACCCCCATAACAGCAATTACTGAGCCCATGAACATGTGGATGAAGATTGCGAAAACCGTAATGATCAGTGCCAACAGGAAAATATTGTGTG # Questionable array : NO Score: 8.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 425-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZDC01000154.1 Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 strain DSM 20004 Scaffold154, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 424 36 100.0 30 .................................... ATTGTGATTCATCCAAAGTAATCACCTCCC 358 36 100.0 30 .................................... GAACACAATGAGTTGTTATTAAATATTGGA 292 36 100.0 30 .................................... AATACCAGGTAACACATCGTTTGCTGCTTT 226 36 100.0 30 .................................... CGACTTTACAAATTGGTTTAAGGATATGGC 160 36 100.0 30 .................................... CACCGACCCAGTTAATATCAAGTATCGCTT 94 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Left flank : GGGGAATTTCATTCTTTGAGCAATGCAGTTCATAAATTAGTATCGTCGTACACAACTTGTTGTCGTAATAATTCTGCCGCGGGTTTAAAGTTACCGGAACTGATCCCGCTGGTGGCGCACGAATATGAGTAGTAAGTATATGCGTTTATTAGTAATGTTCGACTTACCAGTAGTAAAGGCAAAAGAGCGTCGTGCAGCAGCAAAATTCCGGCAATACTTATTAGGTGATGGTTACGTGATGATGCAATATTCCGTTTATTATCGCATTGTTAATGGCTACGATATGGCTAAAAAGTATGAGCTGCGGCTCGATGATAATTTGCCCGAAAAAGGGTCAGTAAGATTATTAGTTGTAACAGAGAAACAATTCGATGAAATGCGTCTGTTAGTAGGTGATCCACTACCAAATGAAGAGAAACTAGATAGTGGGCAGATGACCACTTTTTAGACAAGCAAAAGAGCCTGATATCCGCGTGATATCAGGTTCTTTTAGTATACTG # Right flank : CCCAAACAACTTATACTTCATCGCTTCACCAGATCTATTTTAGCTGAAAACTGAAGGAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 602-109 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZDC01000106.1 Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 strain DSM 20004 Scaffold106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 601 36 100.0 30 .................................... CACAAGCCTAGCAATACAGCCTGATGGTAT 535 36 100.0 30 .................................... AGTAGCCCCGACATTAGCCAATCAGGCATT 469 36 100.0 30 .................................... ACTGCCGACCAAGTTATTTATCATATTCGA 403 36 100.0 23 .................................... CCGGATAAGTTGCGTTACCGCGT Deletion [345] 344 36 88.9 30 TG.GN............................... CCCGATTAATGCAACAACTAAAAAATTAGA 278 36 100.0 30 .................................... CTTGACCGATGAGAGTAGCGACTTGGTGAA 212 36 100.0 32 .................................... CAATGGGTATAATCAAGGCATGGCAATACTAG 144 36 72.2 0 .G...G......T.AG....A....A...T.G...T | ========== ====== ====== ====== ==================================== ================================ ================== 8 36 95.1 29 GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Left flank : TTTAGCCTTTTGAATTGCGTCTTGATAGGTGGTTTCTAGCCCAGCTATTTTCACTTTAACCTGTCCCAGCATAGTAGTGTTTAATGTAGTAATCGGTTACATTTAGATACTTAGAAGCAATTTATACTCTGAGTACGTCATTACCAGCAATGGGGCACATTTTTGATCGTCATAGAATATATTCCTTTCTTATTGGTATATCAAATGTTGATAGTGTTTGTGTACCTATGATTATAGTTGAGCAATTATCAAAGAAATTGGAAATGCGAAGTGTAGAATTAGTTATATAATCTCATTATTTATGTGAATAGCGATTAAAATAGATGTCCTTAAATGTACCAGAAATATTTTATCTGAATATGCAATTTAGTACCACTAACTGTGATTTCTGGGTGTTTTAGTCCGAACTAAGTTGATGAGTAAGATTAAACGGTTGGTTACTTTTTGGACATAGAAAATAGCCCAGTATCCGTGTGATATCGGGCTATCGCGGTGTACGT # Right flank : TCACTCTTTATGGATAAGTTATATTGATAATCATAATTGCCTTTTGTAATATCCCTTAGATTCTTAAGATATTTTTTATTCATTATTTTTGAATAGAACAAATACTTAT # Questionable array : NO Score: 2.93 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //