Array 1 5765-5928 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014883.1 Loigolactobacillus backii strain TMW 1.1991 plasmid pL11991-2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 5765 31 100.0 35 ............................... TTATTAGGCATAATTCTAAAGTTTATGAGTTTTAG 5831 31 100.0 35 ............................... AGTTTAACCATGAAAGTATTTCTGATGAGTTTTAG 5897 30 77.4 0 ..............C.CT...G..T....T- | GG [5910] Deletion [5927] ========== ====== ====== ====== =============================== =================================== ================== 3 31 92.5 35 AAGGATGTTAAATCAATAAGGTTAAACCCCA # Left flank : AACTTATATTCACACCAAAGCCAATGGCTGGTGTTATTTATCAAGCATTCAGGATTTATATTCACGTAAAATCATTGCCCATAAAATCAGCCGTCATATGACTGCTGATCTTGTGATCAGCACTTTTCAACAAGCCTTTGAAACTAGAAAGACGACTAATAACTTAATTGTGCATACCGATCTGGGTAGCCAGTACCGCAGTGCTGGCTTTGAACAGATCTTAGCGCAACACCATATTCGCCATTCTTATAGCAAGCGTGGCTGTCCCTATGACAATTCATGTTTGGAATCATTTCACGCCAGTTTGAAAAAAGAAGAGGTTTACCAACACCATTATCAGGATTTTGAAGAAGCAAATGCTGCAATATTCAGCTACATTGAGAGCTTTTATAACAGTGCTCGAATTCACAGTAGCATTGATTATTTAACTCCAAATGAAAAGGAAAAATTAGTCGCTTAAATTATACATAAAATGTGTCCAGATTCTTGACCTAAATCCA # Right flank : TAATGGTCTTTTTTACTTCTGTGCTATACTAGGAATTACAAGTGTTCATTAGAACTGTCCAAAGGGAGAATTGGAAATGGCTAAAATCGGTTATGCGCGTGTGAGTTCCAAGGAGCAACATTTAGATCGACAGTTAGCGGCTTTAAAAGACGTTGATAAATTATTTACGGATAAATTAAGTGGGGCTAACACTAATCGGCCAGAACTGCAAAAAATGCTGGCCTATATTCGTGAGGGTGATATTGTAATGGTCACTGAATTAGATCGCTTAGGCAGAAACAACCATGATTTGACTAAGATCATGAACTCCATTCAAAATAAGGGTGCCACCCTAGATGTGTTGAATTTACCGTCCATGACAGGGATTTCCAAGGTCATTGGTTGCCACTTCTCTGGAAATATGACACACTTTGATTGATGAGACACGAATTGGGGGATGAATGCGGTTTGGATATTTTATACTGTGGAGATGACCACATGTTTTCGGGGTTGATTATTTC # Questionable array : NO Score: 4.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAGGATGTTAAATCAATAAGGTTAAACCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 847877-851738 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014881.1 Loigolactobacillus backii strain TMW 1.1991 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 847877 36 100.0 30 .................................... CGCACTTGAAGCGGTATCCTTGCCAGATTG 847943 36 100.0 30 .................................... TTGTTTGGCTGATGCCACTCTCTTTCGCTA 848009 36 100.0 30 .................................... AGGTGAGAGCAATTACTAAAATAGTACAAC 848075 36 100.0 30 .................................... GTGATCACTATTAATTTGCATCACTGCCTA 848141 36 100.0 30 .................................... CTTGATGAATAAAAATAAAGTCACGGTTGA 848207 36 100.0 30 .................................... GCAAGATGAGATGCAGCAATTTGTGATTAG 848273 36 100.0 30 .................................... TGCTTATGCTTGTGTAGAATATTAATGTGC 848339 36 100.0 30 .................................... CCAAGCACCCTTTTTTTATCCCAACCATAC 848405 36 100.0 30 .................................... GGCTAGTTGTGTCATATAAATAAATTGCTT 848471 36 100.0 30 .................................... TCCCGGAATGGCACACTGTCTACCACTATT 848537 36 100.0 30 .................................... TACCGACTGCAACATCTATGTCTGCTGGTT 848603 36 100.0 30 .................................... ACAGCCATGCAGAGCCTGATCCTTAAATAT 848669 36 100.0 30 .................................... ACGCCTAGAACAGTACCCATTGCAGTACCA 848735 36 100.0 30 .................................... GTCTGACGTGCCGCGGTTTGGCTTTTCTGG 848801 36 100.0 30 .................................... CAGAGAAATTGATATAGCTCTTAGCTTCTT 848867 36 100.0 30 .................................... ACCAGACTTCTTCACCAGCAATTTTTGCGA 848933 36 100.0 30 .................................... TGTTGCCATTTGAATGCCTCCTAAATATTT 848999 36 100.0 30 .................................... TACGAAGCACCGCATAAAGCGGATGTGCTC 849065 36 100.0 30 .................................... CACCGGTTTGGCTTCACTCTTTAAAGACAA 849131 36 100.0 30 .................................... GATCGGACGCACTTTGTCTATTATGGATTT 849197 36 100.0 30 .................................... AGCCAAGAATAATAAAACGGAGGCGATATT 849263 36 100.0 30 .................................... CTGATATTTAGATTTTAGTAACTACACTTT 849329 36 100.0 30 .................................... GAGAGCGGCCACCGTTTGCGTGACATTATC 849395 36 100.0 30 .................................... TGTATTTTGCGGTGTGGTCATTTTTCATGA 849461 36 100.0 30 .................................... ATTATACGTTGAAAAATACAATAAGCAGAT 849527 36 100.0 30 .................................... AGGAATTAGCATTGGAAATACTGCGGGCAT 849593 36 100.0 30 .................................... CTTACACGACCGCTTGAACGCTTGTGTTAG 849659 36 100.0 30 .................................... TCATCTCCTTCTACCCGATTGACCCCCATT 849725 36 100.0 30 .................................... CAATAGCAGAAAAGTATGAGCGATGTGGGA 849791 36 100.0 30 .................................... TTAATTACGCGGTTAAGCAAAAGATCTTAG 849857 36 100.0 30 .................................... TGTTCAATCAGCATGGTAACGTCATCAATT 849923 36 100.0 30 .................................... CCAGACGAAACGTATTTAACCCCGTTGCCG 849989 36 100.0 30 .................................... TTTCAGTATCGCCTTGTTTGATTTGCTGAG 850055 36 100.0 30 .................................... TAAATTGCGTTATCGAGTTGTATTGCCTGG 850121 36 100.0 30 .................................... TTAACCTGATAATAATAGTCAGCAAATCTT 850187 36 100.0 29 .................................... AGCGACGCTAAACAGGCTGTGGCTGATAA 850252 36 100.0 30 .................................... ATAAGGTTAGCGAGACCTTAGCATGGATAA 850318 36 100.0 30 .................................... TAGTGGATAAGACCAAGACCGAAGAATTAG 850384 36 100.0 30 .................................... CGCAATTCAAAGGCTCTTTGTCGGCGCTGT 850450 36 100.0 30 .................................... AAGTCTTTCAGTTTTGATGCCGGTGTCTGG 850516 36 100.0 30 .................................... CTAGGATAGGTATAAAAGCTGAACTAAAAA 850582 36 100.0 30 .................................... CAACTTCTCTTGCCGATCAATTTGCTTTAA 850648 36 100.0 30 .................................... CAACTAGAATTGCATCCTTATCCACTGATG 850714 36 100.0 31 .................................... CCTCAACGGCTGATGGCATCAACGATTCATG 850781 36 100.0 30 .................................... GGATAATTTTTGCTTATCTCGTTCCTTGTT 850847 36 100.0 30 .................................... CAACTAGAATTGCATCCTTATCCACTGATG 850913 36 100.0 30 .................................... ACGAGAAGTTTTGCACCGCCGTGTTCGTGG 850979 36 100.0 30 .................................... GCTGTTCTGTGTACTTGCGCATAATGACCG 851045 36 100.0 30 .................................... ATGGTTCTGGATTTTAGTTGTCTTTATTGT 851111 36 100.0 30 .................................... CCTTGGTTAGCTCAATTTTCTTAGATACAT 851177 36 100.0 30 .................................... TACTGAACTAGTTAATCAATATAATAAAAA 851243 36 100.0 30 .................................... CTTTCAATGTAAGTCAATACCGATTTAGTG 851309 36 100.0 30 .................................... CACAATCATTACCATTACGATGCTCGCTGG 851375 36 100.0 30 .................................... TCTCTATACTGAGAAATAAATATGTCTTGA 851441 36 100.0 29 .................................... ACTCCTGGTTCAAACATTGAATACTATGT 851506 36 100.0 30 .................................... TCCACTCAGCCAGCTCATAATGATATGAGT 851572 36 100.0 29 .................................... CAAAAGCAATGATGAACCTTATATTTATA 851637 36 100.0 30 .................................... TGACCGTGTGTGTTATTTCTTCGTCAATTT 851703 36 97.2 0 .............C...................... | ========== ====== ====== ====== ==================================== =============================== ================== 59 36 100.0 30 GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Left flank : GATGAATTTCATTCGTTGAGTAACGCGGTTCATAAATTAGTTTCATCGTACACTACTTGTTGTCGTAATAACTCTGCCGCGGGATTAAAGTTGCCGGAACTTATCCCGTTGGTGGCACACGAGTATGAGTAGCAAATATATGCGCCTATTAGTTATGTTTGATTTACCAGTAGTAAAGGCAAAAGATCGTCGTGCAGCGGCAAAATTCCGGCAGTATTTATTGGGCGAAGGCTACGTTATGATGCAATACTCGGTTTATTATCGCATTGTAAATGGTTATGATATGTCAAAAAAATACGAGCTGCGGTTAGATGATAATTTGCCCGAAAAAGGGTCAGTAAGATTGTTGGTTATAACCGAAAAACAATTCGATGAAATGCGTCTGCTAGTAGGTGATCCACTGCCTAACGAAGAAAAAGTTGAAAGTGGGCAGATGACCACTTTTTAGACAAGCAAAAGAGCCTGATATCCGCGTGATATTAGGCTCTTTTGGTACACTG # Right flank : CTCAGCATAACATAGTAAGATATAAGGCTGGAAATTGTCTTCATAGTTGCGAATTATGTCGGGTTTTCAACGACTCGAATTTATACTAGGTTTCTAATATTTGCCTTTATGTGTTGACTTTTCTAAGCTTACTGACCTTCTTGGCGGATGGGAGGAAGCCTATTTTTAAATAGAGAGTGTCGGCTTTTATTGTGAAACCATCATATCAGCCATAACTACATATTTTTTTGTGCCAGTACCGGTGCCACTTGCTTCGTTTTCAGAAGCAAATTTAACATTGCAAATACCAATATTTCCTTGCTTTACTGCCAATGAACAAGCATTTTCAATAGTTTTTTGAAGGCTTTTACCCTCACTGAATACCACATTTCCTGTCGATTGATAACCTTCTAATGCCTGACCCATTGTGATTAAAGTTTTGTTTGAATTGTTATTAAATAATCCCATGATATTAACTCCTTAATTTACATTCATTTTTGTGTTTAAGATATTTGTCTTGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //