Array 1 67354-67075 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPSS01000003.1 Sulfolobus acidocaldarius strain NG05B_CO5_13 NG05B_CO5_13_scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 67353 26 96.2 36 .........................C ATATCATCATCTCTCATCATCTGCCTGCAACGTATC 67291 26 100.0 35 .......................... CACATTCATCCCTATAGACATTTATTGAAAACGAG 67230 26 100.0 40 .......................... TTGCTTTAACATAGATCGGTGAAAGCATCTCAAAAGGTAG 67164 26 100.0 38 .......................... AAGTATATATCATTTGAATGAATGTTGAGAGCCACATT 67100 26 73.1 0 T..A.G.........AA......G.C | ========== ====== ====== ====== ========================== ======================================== ================== 5 26 93.9 38 GAAGAATCCCATAAGGGATTGAAAGT # Left flank : TGCCGATTCCCCTCTTGTTTTGGTACATCGAGGGAAATTTTCATGTAGGAGAGATTAAGTTTCCTTCTAAATACTTTTCAGTAATAGAGGTTGTTTAATTTTAGATAAAAGAAGGGAATTTATAAATTTATTTATAAACACTACTATGAACGTCTTTTGAAAAATTATACTATGAGCAAAGAAAATTATGAAAAACTTTTCAAGGTGACCTTACGATTTAAGTAGTTAATACTAGGTGTAATCTTACCATAATTTTCGATTTCGTCATAAGGTTTATAAACGTCATTTTTCGAGTCTCAATGCAACCTATCCCAACTTAGTCACAACCCCTTAACATTTATAAATGCACAACCATCTTTCAACTCTAGTTAAGCACTATGCGACCAAAAGACCTAAACATAATTACTAGGATTCAAGGTCGCATGATTAAGTTAGGGGCTTAAGCAAAAGTTTATTAACAAGAACGTCAAATTTAGGATAAGGGAATAATAAATACATCA # Right flank : CGTATTCATTTTTATATAGAACTTTAATTATTGAGTAGAAGAGGTCAGTAATGAACATTTTAACTATTTACTTTCCCATTTCTCTACGGAGAAGTTCATTAAGAACTTTGATGATAAGAAAAGGACTCTATTATAATGAAGTAAAAAGTGTTTAAGTCAAGCAAGTGAAGCATAGGTACTAAGAGAGTCCTTTAAAATTTTATAGGGTATATCCCCATGAAGTATCTACTTATCATATTCGATAACGTAATCGAGAGGCGTGTTAAGGGCGTATAAGTTATGCAGGATTGAAATACGCTCAATTCTTGCATCATGTATAGGCTATAACAGAGAGCTGGTCATGAAGAGTTTTAAGAGAAACTCTTTCTTTAGATAGAGAATCACTTTAGGAGCCCTCATACCCTTTTATCTAGTTGAGACATAGGAAGAAACTAGTGAAGATAAGTGTAGATATTTTTCTAAGTCAAGTAACCTCGCAAGATGCCGTGATCTTTAGGTTT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGAATCCCATAAGGGATTGAAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 107508-106850 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPSS01000003.1 Sulfolobus acidocaldarius strain NG05B_CO5_13 NG05B_CO5_13_scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 107507 25 100.0 39 ......................... CTCTGTTCACAGAAATATTTGTCAAGCTCAATCTTAAAG 107443 25 100.0 42 ......................... AGTTTTGGGAACACTTCTCTTCCCTTTATCTGTTAGTTCATA 107376 25 100.0 39 ......................... CTCAAATCGTTTGCGTACTGTTTAAAGCTTTTTAAACTC 107312 25 100.0 37 ......................... AGCACCCTATTTTCAGGTGCTGGCTGACTAGAACTTT 107250 25 100.0 38 ......................... GGGTATAAATAAAGTATGCCAGCCTGTGCTAATGACAG 107187 25 100.0 36 ......................... AGTTTATTATGTCATTGGACAGCAAGTCATACGAGA 107126 25 100.0 41 ......................... TTTTCTCCTTTTTTCATAATACTTCTTTCCATATTTCCGCA 107060 25 100.0 37 ......................... GCTCTGCTAACATTAGCCTCTTCTCCTGCTAGAGCTA 106998 25 100.0 38 ......................... ATCTTGTCGCTTATGTGAACGTCTAGGGAGTCGATAAT 106935 25 100.0 36 ......................... CCAAACCAAGTTAGGTTTTATGTTGAAGGGGACTCT 106874 25 96.0 0 ..............A.......... | ========== ====== ====== ====== ========================= ========================================== ================== 11 25 99.6 38 GATGAATCCCAAAAGGGATTGAAAG # Left flank : GAGAGCGTAATTAATAAGATAAGGGGAACAGAGAGCGGAAGGAGAAAAGAGAGGATAGTCCAACCTGCAAAGAAATGTATCAACTGCGGATTCTTGCCCTACTGCAATCCCCTAAGGCAAGGGAGTCTTTATGTAAGGGAGATATAGGTGTTGTATTGAAAACTTTTCAGTATGTCAGACCTGTTAAATTTAGGTCAAATACGTGGGTTTATAAGTCTATTTATAAATATTTTGATAAACATATTTTGAAAAATAATTACAGATTGCCTGAGATGGCTGAAGAACTTTTTAAGTTTACGTTACTAAAAACATAATTGTAGGTTTGATGAATCGCACTCTTTTCTTCGATCTTTTCATGAAGTTTATAAATGTTGTTTTTCGAGTCTCAATGCGACCCATCCCAACTTAGTTACAACCCCTCAACATNGTTCCCCATAAAACACCTAAAATTTAAATACAAGGAAAGGGAAAAATAAGACAAGGGATATAAAAACAAACCA # Right flank : ACGGCAATTATGGTTATATCATAATGATAATGCTAAGTCGAGCGTATTAGACTAGTTATATCTAAGGGATGCGCTTTACTCACAGGTAGTATAGGAGTAGTGTAGACTTGGAGGAGGAATAACGCCATTTATTAGCTCTACCTCCACAATAGTTTAATGCAGCAATAATGTCGTCTCTGGACAATCAATATAGATCTAGAATTGCTAGGAAGGGGTGCGTTTTCGTAAGCTATACTTCTCCTCACACGCACGTTAGTGTCTGTACTGAATTACAAGAAGATCTTCTACTTTAACGGCACAACACAGAGCTCTAAGCGATAAAAAAATTAATAATGAAATAAATATAAAATTAAGTATGAAAGATGGGAAAAAGATAGCATTCGTTAAGGACCACGGGGCTCACCTGAGGGTCAACAAGGGAATGATAGAGTGCTCAGTTAAAGATGAGGTCAAGTGGTCTGTGTCTCCTTCAGAGTTGTCCTCGATCGTCGTGATCTCAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAATCCCAAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 25914-21223 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPSS01000002.1 Sulfolobus acidocaldarius strain NG05B_CO5_13 NG05B_CO5_13_scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 25913 24 100.0 38 ........................ CTCTAAGAGGATCTTTGCCAGGGCATAGTAATAAGCTG 25851 24 100.0 35 ........................ GAGTTCAAATAGAATAATGGAACTGAAGATACATT 25792 24 100.0 36 ........................ GAAGCAGAAATTCGATGAGGCATTAAACGCATTAAA 25732 24 100.0 38 ........................ AACAGCATTAATATTCCGAGGAGGATTGCTAAACCGTT 25670 24 100.0 36 ........................ ATCTTCTCTGTCCTCTACTACTTTCTGCTCTTCTTT 25610 24 100.0 36 ........................ TGAAAAGTTCATAAAAAAGTACCCTAACGTAGAACA 25550 24 100.0 34 ........................ AATTTTATGATATCGCTTTTGTTCAAGGAAACAT 25492 24 100.0 39 ........................ AATTCTAAGTGCACAAGAAGGACTAGAAGAGGCAGGCCT 25429 24 100.0 34 ........................ TAATGCCCAGTAACATAGATGCCTCCTTGATTAT 25371 24 100.0 35 ........................ AATTTGGATTGACGTCACCTCAAGATCTATTACCT 25312 24 100.0 36 ........................ ATATTTAAGCCTTACTCTTTACATTAAAAGTAACAA 25252 24 100.0 35 ........................ TCGACGTTAGTCTTAGATTTTTATCATTTTTAGGT 25193 24 100.0 34 ........................ TTGTGCTCTTTAATGTCAAACAGTGTGATCTATT 25135 24 100.0 35 ........................ ACAGTGCATGAAGTAGCATCATATGTCGTAAGTGA 25076 24 100.0 36 ........................ TCTCTGGGTTAAGTGCAAAGAGCACTGGGATTACAA 25016 24 100.0 34 ........................ CAACAAGGCTGAGAAGATAGCAAAGAAGCTAGTA 24958 24 100.0 38 ........................ TACAATAATTTCAGATTTCCAGTAAATGATACAAATTC 24896 24 100.0 36 ........................ TTGTCATTAAACTGACAACTTTGTCTCTGACCCAAA 24836 24 100.0 34 ........................ AGTAGCGGTATACAAAAATGTATTTGTTGTGATA 24778 24 100.0 34 ........................ TGGCTCACAGGCATTAATACCTGCAAAGCCTAGG 24720 24 100.0 39 ........................ AAAAGTTTGCCAATTTAGGTGCTGTGCAGGAAGCATTTA 24657 24 100.0 34 ........................ GAATAATTGTAGATCAGCCATCAACTTCCACACG 24599 24 100.0 36 ........................ AGAAAATGAGTAGTGAGATAAAGACAAAAAATAAGT 24539 24 100.0 39 ........................ AATTTCTATATAATCCAAGAGACACAGAGAGGTTTCTAC 24476 24 100.0 37 ........................ TACATTACTTTTAGAAATATAGTATGAGCGTAACATA 24415 24 100.0 33 ........................ CAGTACACAAAGTGGATAGGAAAAGTCAACAAT 24358 24 100.0 36 ........................ ATCGTATATTATATTGGGGCAGAAAAAATGAATGAT 24298 24 100.0 34 ........................ CAGGTTCAATTTCAGTAAATAATGGCATTACAAT 24240 24 100.0 38 ........................ AACATCAGACTTTTGCACTTTTATTAGAAGGCTTTGGA 24178 24 100.0 34 ........................ GATACATTGCATATATTGGCAATCAGCAATACAA 24120 24 100.0 36 ........................ ACTATATATTGTTTGGAGCTTATCATAAACTTCATC 24060 24 100.0 34 ........................ CTGAATAGAGAGATGATAGAAGAAACGGTAAGTA 24002 24 100.0 39 ........................ TCAGCCTCTAATTCTGCTGCAACTTCCATCAATTTCCTT 23939 24 100.0 39 ........................ ATTAATTCCAAAGGACATTGAGAAGAAATTTGGCTTAAA 23876 24 100.0 37 ........................ ATATGAGCAACAGCAACTCAAATCTTTATATGAAGTC 23815 24 100.0 34 ........................ CACCAAAGAGTTTTTGTCCAAAGCCTTTTATGGA 23757 24 100.0 37 ........................ CAGTCTCAATGTCTTTATGAGACAATTCTATATCCAA 23696 24 100.0 36 ........................ GCACTTCTACTTGCTTAACGCTATAGCAAGCAAGAA 23636 24 100.0 38 ........................ GTTCATCAACCTCATGCTGAGTAAGACTATTAGTATGT 23574 24 100.0 36 ........................ CTCGTATTCGTAAAAGCCCTCGTGGGTGGTGACGAT 23514 24 95.8 35 .......................A CTTTACAACTAATTTTTTCAGGAAAACAAATTGAA 23455 24 100.0 34 ........................ TATGTCTTAGATAGTTGAAAAAGCTAAAGCTTTT 23397 24 100.0 36 ........................ GAATGTGTCCCCCTAGAGGTTTTCACCAAACAACCA 23337 24 100.0 36 ........................ AAAAAACCTTTAACCTCTATCGAATGCTGTCAAAAA 23277 24 100.0 35 ........................ AACGTTACGACCACTACTACTCAGAAGAAGATAGT 23218 24 100.0 37 ........................ GAGGGATGAAGGCAAATCAGTATCAGCAATAGTAGAG 23157 24 100.0 35 ........................ GAAGTAGAACAGCTGTTTTTCAGGATTGAAATTAT 23098 24 100.0 39 ........................ AAGAGAATACTTTCTCGCCTCAGCAAGAATCGTATCAAT 23035 24 100.0 35 ........................ GTATGTGGGAGAGCTTTATGAGTGGTAAGACACAC 22976 24 100.0 33 ........................ ATGCAGGTACTATACTGAGCCTGATGAACAGCA 22919 24 100.0 34 ........................ AAATTTAAGGAAAATGGAGTGTATGTATATAAAT 22861 24 100.0 35 ........................ CTCAATTATTTTCAATGCTTTTTCTTTTTCGTTGT 22802 24 100.0 36 ........................ ACATCAGCACTTATGGATACTACGCCATGCTCATCT 22742 24 100.0 35 ........................ ACTATTACTTTTGAAAATATGTAGATAAGACTGGT 22683 24 100.0 34 ........................ TTACAGTTGTTCCGTTAGGAAGTATATAGTTACT 22625 24 100.0 37 ........................ AAAATAATCATAAAACCCGAGCATTACGAAGAATTGA 22564 24 95.8 37 .......T................ TGTAAAGGACTTCTTAAAAAGGTTAGAGGGGTTTCTC 22503 24 95.8 35 .......T................ GTAATTATTCTGATGGGTGCTATAATCTCGATGGC 22444 24 100.0 35 ........................ AGCGATTAGTTTAGTCGAATTAGCTATTGCGACTT 22385 24 95.8 34 ...........G............ ATGGGATCCTGATAATTCGGCATCAGCACAATTC 22327 24 100.0 35 ........................ CTCTTCATTTGTCTCGTGAAATATAGGGTTTTTCA 22268 24 95.8 35 ...........G............ ATAGGGTAGTTCACAAAGAGCCAGCCCTCGTCAAC 22209 24 100.0 35 ........................ CTTTACGTAGTAGTTATAGAGCTTCGTTACGTGCT 22150 24 100.0 38 ........................ CTTGAACCATTGAACCTGCGATTGCAGGGATTAAGTAT 22088 24 100.0 36 ........................ GCTGACTGGGGGTGAGCCAGAAATGAAGACTGGAAG 22028 24 100.0 36 ........................ TAAAATTAGTCTGCTGGCCAATTAAGAACAAACTCT 21968 24 100.0 35 ........................ GTGCAACAGGGTGAAACATAGATGAGCACATTTTT 21909 24 100.0 35 ........................ ATTATGCTCATTATCTCTGATTTCGACCTTAAAGC 21850 24 100.0 37 ........................ CTACATTGTCCTGAAGTCCTAACTTCTTTAATTCCTT 21789 24 100.0 39 ........................ TTTTTATTTTCAGTAGCTATCACCATAGTAGCCCTAAAA 21726 24 100.0 37 ........................ TACTCCCCAGGCTTACCCAGCAAGAAGAGGAAGCCTT 21665 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 21606 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 21547 24 100.0 36 ........................ CATTTTAGCTCAAGCATCACCAGCATCAATTGAAAG 21487 24 100.0 36 ........................ ACCGTTCCGTAGATATTATTACTGTAACTCCCTCCC 21427 24 100.0 37 ........................ ACTGGGCTCCCCGTGATCACTCCAGGTCCTTATGTTG 21366 24 100.0 36 ........................ GACGCTAAAAAGCAAGAACAACAATCACAACAATCG 21306 24 100.0 36 ........................ TTTCTTAGTGAATCCCATGTACGTATATCTAATTTA 21246 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================= ================== 79 24 99.7 36 GTAATAACGACAAGAAACTAAAAC # Left flank : ATCACTTAGAGTATAAAACTTCCTCCTCACGTTCACTAAAGAGTTCAAGAACGGCGACACTAGGACCACATCGTTTCTCTTTCCGTGGACGAGAACTGGTATATTTAGACTGGAAAGGAACAAGATCACCTCTGATGTTAGCCTAACATTATTACCGACAATGACCACTAACTCTAGGTCCAGACTAGACACAGTTAAGTTCTTTCCAACGGACCATGTCATCTGAAGATCTGAGCCTTTCCTCATAATTGTAGCGTTTTTAATCACTAGAATGGACATAATAGAAATTTTTCTCTCAAAAATAATAAACTTTTATCATAATTAATAAATTTTGGGTATTATGTTATTTCCTTCCGTATCCTTACGTAAAATGGTTTTAGGGTTACCCTGTGTAGCCTAAAACTCCCTTCCGCACCCCAGGGAACAAAATTGACAATGAAGGAGAGAAAATATTTATAAACCAGGAAATAAGAATGTAAAATTGATGAAGCCAACGATCA # Right flank : ACTGTAACTATTTAAAATAGAATGATGAGAGAATGACAAAGCCTTGCCGTTTATGGCGAGGTAAAGGTTTCTACTTACGAGAGAAAAGTTGTTATTAAGAGGAAGCCCGTAAGAGCATGGGTCAGTCAGTGTGTGTCCCTCTTTCCTGGTACATATCCCTGAGTCTCGAGGAGCGTGGAGTTAGGGCAACTCCACCAAAGGGATAGGGGTTGAGTGGCTGAAGGCTCAGCCAGTGGTCTACCACTGAAAGAGTGGAGCGGAGCGGGCTTCTGAGCCCACTAGCTATGAAGTGATAAAAGTGAAGGTGATAAACTACAGACCTGTGAACTGCCCTAGGTAACCCTCACTCTTTAGAGCGAGGAGGAAGTCAGTATCACACCAGATGCTGTGATGTCTGTTGCAACCTTAATTGCAATTGTATCCGACGAGACTGTCATGGGAATCATTCAAACTTAGAATACATAGATCCTCAATTCATCCTCTCCAATCATATGTCTAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 38281-46448 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPSS01000002.1 Sulfolobus acidocaldarius strain NG05B_CO5_13 NG05B_CO5_13_scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 38281 24 100.0 35 ........................ AGCTCTTTCGCACTGTTATTTTACAATTTACACGT 38340 24 100.0 34 ........................ GCTTGTTGATTTGGGCCCATGCGAGGAGGATTAA 38398 24 100.0 38 ........................ TGATATTGTATCGTTGTAGTTAGTATTGTCCAGAAGAA 38460 24 100.0 37 ........................ AAGAACTCCCGGGAGCCCTGGTGGTATGCCCGAAATT 38521 24 100.0 38 ........................ ATCGTAAGAGAAGTGGGCTAGCGCTACCCTCCTCCACT 38583 24 100.0 38 ........................ AGAAAATATCTCAAGGAGGGCGAGGAAGTATGCGAAAG 38645 24 100.0 32 ........................ TGGATGCTGAGTTAACTCCCCAGTTTACCGTA 38701 24 100.0 39 ........................ TTTTAGCCTGACCATTTCCCTCGTTAAAAAATAAGGAAA 38764 24 100.0 34 ........................ TTTCACGCTCCATGACCTCAGTGAATATCTCATT 38822 24 100.0 37 ........................ TCATAGGGGCTATATTCAACAATACGTTGCTCCAGTT 38883 24 100.0 42 ........................ GAGAAGAAGCAAAGCATACCGCTCTACAAGGTTCCTTCAGTT 38949 24 100.0 36 ........................ TATGTCGATCTGTCCGGTGTGCTGGTGGGCGAGCAT 39009 24 100.0 39 ........................ AAATAGTGGTTTCCAAGACTGTGCAAATGCTTTTTTATA 39072 24 100.0 35 ........................ TTTTAGCTGTTTCTCCATTCCGTCCCACCAACTAT 39131 24 100.0 36 ........................ TAAAATATTTTAATGTTCCGGAGATAGATTATAACT 39191 24 100.0 35 ........................ TGATATTTGGAGTGGTCGTGATTTTAATGGGAGCT 39250 24 100.0 35 ........................ ATTAACTACATCGCTAACAGCTTGGTACAGCCTGT 39309 24 100.0 36 ........................ AACAAAAAAATGAAGTTTTGGGTTATGACTTTCTAC 39369 24 100.0 37 ........................ TAGAGGCACAATTACAGAATTTAGTAATTGATCAAAG 39430 24 100.0 37 ........................ TGAATTCTGCCTTTTTATATAACGCATTACTGTGATC 39491 24 100.0 35 ........................ TTTGAGACGCTGAAAGACGTAGCGAAAGACTCTGC 39550 24 100.0 34 ........................ ATTAAAATGCTGTAGAAACACTTGACCAAATATA 39608 24 100.0 38 ........................ TAAAGGGATCCTGACCTAAGGACTATCGGGCTTACTTT 39670 24 100.0 35 ........................ ACTATCTCAGCTATCGTCACTATCGACATCTTCAC 39729 24 100.0 34 ........................ CATTTTATTTATATAGCCTCGTTGTATAGCTTCT 39787 24 100.0 35 ........................ ACTGCTAAAGAGCGCAGGTATTGCGCAAGACTACA 39846 24 100.0 36 ........................ ATAATATACGACGCTCTGGTTAGGTAAAGGTACTCT 39906 24 100.0 35 ........................ AAAATTTCATTCTAAAGAGATAACAGATTTGGGCT 39965 24 100.0 35 ........................ AGTGAATGCTTGTCCTGAGCCTAGTCTGTTTAACG 40024 24 100.0 35 ........................ ACATTTGCTGGAGTTCAGAAAATATCAGTAACCAA 40083 24 100.0 36 ........................ AAAGTTGTTTCAGCCCCATCTTCAATAAGTGAAGGT 40143 24 100.0 36 ........................ AACATAAAAAACACTGCTAGTTTCTATCTGATTAAT 40203 24 100.0 36 ........................ ATAGATAAAATAAATAGTTAATGTTTCATAAAATCT 40263 24 100.0 36 ........................ AACAACGTGATGATACTGACATTTGCGGGCTATTGT 40323 24 100.0 34 ........................ GCTGTTCATATAACTGTAATAAATTAAGAAACTT 40381 24 100.0 34 ........................ AACTCTTGAATTGTTAAGTCTTTAATGAATGCAT 40439 24 100.0 34 ........................ AATGTACACCGTAGCCATTTTTTTGCACTTCTTT 40497 24 100.0 35 ........................ AAGAACAGCGATGTTTACAAGTCAGCACAAGACGT 40556 24 100.0 35 ........................ CATTTTCTTGGTTTTATCTATTTACCGTTTTAAAC 40615 24 100.0 37 ........................ CTAGATTGTTAGCACCGTGCATTAGCAATAATGCGTT 40676 24 100.0 34 ........................ GATTGCTGATGACGATGGAATAGTTACCACAAGC 40734 24 100.0 35 ........................ TTTTATTTTCACCGACAAAACGAAAAAAATTGAAT 40793 24 100.0 35 ........................ TTAAAGAGGCAACAAAGCGAAAAATTCTATATGCC 40852 24 100.0 35 ........................ TTGTTGTGCTAACTGGTTTATCGCATCCCCTATTC 40911 24 100.0 35 ........................ TTATGTTATTTGTACAAACTTCTTAGTTGCCAATT 40970 24 100.0 36 ........................ TTCTTGTAGTTTCGGGAAGACATTCTCACTGGTGTA 41030 24 100.0 39 ........................ TAGTAGTAGTTAATACTGCTGACTGAATTTTTCTTAGTT 41093 24 100.0 35 ........................ TTTATTTCAAAAAGTTACACTATAAAGATGAATTA 41152 24 100.0 34 ........................ TTGGGTAAGATCTAGACCTTATGTTCCTCTTTCT 41210 24 100.0 33 ........................ TTGGGATATATTGCACAGACAAACTTTGTCTCC 41267 24 100.0 40 ........................ ATGTTAGGAATATTGTTAAAAATCCGCCTATAATTCCGAT 41331 24 100.0 34 ........................ ATTTTTTATGCCATACCAACCCATTTTAATCAAA 41389 24 100.0 34 ........................ CAGTATATGCGTGTTGATGATTTTCTGAAGACTT 41447 24 100.0 34 ........................ ATAGCAAAGTACGAATAATCTATATTCCTGACCT 41505 24 100.0 34 ........................ ATATCTCATGGTTATGTTTCTTCAGATCCAGGCT 41563 24 100.0 35 ........................ GCGGCAGCTACTGGGTCTAACGCCTTCCACTCGAT 41622 24 100.0 35 ........................ ACATAAGCCAGCTAAAGAAGACGTATCTGACTGAG 41681 24 100.0 37 ........................ ATTATAAGTAAGGGCTGACTTGTTGAGTAAGACTGGT 41742 24 100.0 37 ........................ ATGATTATGAAATTTGTACAGCAAATGTTGATGAGAA 41803 24 100.0 36 ........................ AATGTCTTTTTTTATATAAATTTTTCGAGTCCTAAT 41863 24 100.0 35 ........................ AGGGAAAAGATCCTCTTCCTAGCTCCTTTCTCTTG 41922 24 100.0 36 ........................ CCTGTACAACGAAAACGGGACATTGTGGGCAATACA 41982 24 100.0 36 ........................ CTCGACCTCTTCTACTACTTCTGGTGGTGCACCCAT 42042 24 100.0 41 ........................ TTAATTAAAGCGGCAAGCTCTCTAGCCAGGCTAGATCCCTT 42107 24 100.0 36 ........................ AAAACAATGTTTTAGTTTTACAGACATTATAAAATT 42167 24 100.0 36 ........................ ACTTCAAGAATGGAATACATTTGTTAAAAATTTGCT 42227 24 100.0 34 ........................ GCCCAAGCTCAGGCTGGAAACAGTGGAAATCCGC 42285 24 100.0 35 ........................ ATATAACAAAGCGCATTGCTGATACGTTACACAGA 42344 24 100.0 34 ........................ TCCATGCCCTCGCCCCCGCCTTTTCTTTTTCTTT 42402 24 100.0 35 ........................ TTCCACATTGATGAGGTAAGCCTCTGAAAAGGTTT 42461 24 100.0 36 ........................ TGTGACCAAATTGAGGCAGAAGTATCCGCAGGGGAA 42521 24 100.0 36 ........................ ACCCCTGACTTTGTCCTTAAAGATAATGAGTTCTTT 42581 24 100.0 38 ........................ AGAAAATGAGTAGTGAAGTTAAGACAAAAAATAAGTCA 42643 24 100.0 38 ........................ TTCACTGTCAAATTTGTCTAGCAGTTCTTTTGCGACTT 42705 24 100.0 35 ........................ ATTATACCACGCCAAAGAGATGGCGTGAGGCGATA 42764 24 100.0 34 ........................ TATTTGAAGGCTTCCCTTAGGGCGTTCTTTAGCG 42822 24 100.0 35 ........................ GTTAAATTCGGCGCCCCAGTAGAAGTCTTTCTCGC 42881 24 100.0 38 ........................ CTATGTGTTGATGAGAGCACAGCTGGGCATGGAGCGTA 42943 24 100.0 35 ........................ AGATGTAGAGAAAACGATCGATTTAAGGCATGCGA 43002 24 100.0 35 ........................ AATAAATCAATCCTTTTTTTAAGGTCTTTCCAAGA 43061 24 100.0 40 ........................ TCAACACAAGGAAACACTTACAATTGGTATGAGTATGAAG 43125 24 100.0 34 ........................ CACTAGACACTGCAGGGACAGATATCAAAAACTT 43183 24 100.0 37 ........................ GTGCCCCTGTCTCCTGCAGTTTTAACGCTAAATATCT 43244 24 100.0 36 ........................ ACCTATCACTTTCCTTGCGAATTCAACCAGTGTTAA 43304 24 100.0 37 ........................ CACCAGCTGTGATGACATAGTCTTTGTCCAGTAATGG 43365 24 100.0 34 ........................ TTCTTCATAAGGATGTATCTGTACCAGTTCACCA 43423 24 100.0 36 ........................ GTCTTTACAGAACTTGGGGCGAAGTAGTATCCCGCA 43483 24 100.0 37 ........................ GATGAACTCGCCTGTGTTACTTGATGTGTATAAGGAA 43544 24 100.0 36 ........................ AACTCTGAGACTGAGGTTCTTTTTGTCTCACTAGAT 43604 24 100.0 35 ........................ ATAGGCTAGAAGCTGCAAAGAGGCTGGGCTGGAAA 43663 24 100.0 34 ........................ TACTGCAAGATCTACATTATAGTTCAATGATTTT 43721 24 100.0 37 ........................ ACGAGTCTCTTTATCAATATAGTGATGTTATCTACAT 43782 24 100.0 36 ........................ TTTTTTGCTTTTAGCTTTTCGTATTCTATTAATGAT 43842 24 100.0 37 ........................ AGTGGCTTAATGTACCTTTTGGTACTGACTATCCAAT 43903 24 100.0 34 ........................ GCTGATAGATAAAGATAAAATAAAAATAGACTTT 43961 24 100.0 37 ........................ GTCTACTTTAAGTGAACTTTATTGTAATCGTATCAAA 44022 24 100.0 33 ........................ TAAGCGTCTAAATAAGTTACCGACAATTGTTAT 44079 24 100.0 35 ........................ ATTGTTGAGAGATGCTACTTATGAAGAAAATGGAA 44138 24 100.0 38 ........................ CTTCATAACTCAACAAAACAAATAAGGTATGCCACTCT 44200 24 100.0 37 ........................ CTTAGCGTAAGAGAGCGTATATTATGCAGCGTATATT 44261 24 100.0 37 ........................ AATTTTCAGAGTCACTTACTTGGAAATTTTGTCTCTC 44322 24 100.0 36 ........................ CAAAAACTGCCGTTTAATGCGCCACTTCTAGAACAA 44382 24 100.0 35 ........................ TTTTGAGAATAGAGTCTATGAAATCTCCTTTTATT 44441 24 100.0 36 ........................ AGGTTCACTCACCCTCGCCTCGCAAGATATTCCAAA 44501 24 100.0 39 ........................ ACAATTCTTTCTTTTTTTATAGCTGTTGTACACATTCCT 44564 24 100.0 35 ........................ TAGTAATATCTAGCGACTTCCATAATTGCTGATGC 44623 24 100.0 35 ........................ ATTATAAAATTGATGTATTATACATTTGCAGAAAT 44682 24 100.0 39 ........................ CGCTATTCTCAAGTACTCTGCGATCTCGCCCTCTGAAAG 44745 24 100.0 38 ........................ TTCATATCGCTCTTTTGAATACTTCATCAATTCTTGTT 44807 24 100.0 34 ........................ TTTTATATTCTGTTGTTCATTTTTTATATCATTT 44865 24 100.0 35 ........................ ATATTATTAGGAATGACAGCCGGAGCTACTACTGT 44924 24 100.0 35 ........................ TTGTACAAAAAAGCTGAATTTAAGCAAGTCGGAAT 44983 24 100.0 36 ........................ ATTTAGTTTGAATATTATGAGTAATTGAGAGTTGGT 45043 24 100.0 37 ........................ TTGCTACAGGAAATGGAGAAGGTGAATATCAGGGAGG 45104 24 100.0 38 ........................ TTTTATCTTCAAAGAGTTGAAAAAGAGAGGGTTAGATA 45166 24 100.0 37 ........................ CTTTCTTCTTCATCTTTATCGATCAAAATTAGCCTTA 45227 24 95.8 37 .C...................... TTTATTATCAAGAGCATTAAGTAATTTTGGAAGACCG 45288 24 100.0 37 ........................ TAATAACTCTCCTACCTTTTCTATTTTTAGCATTTGG 45349 24 100.0 37 ........................ TATTTCGTAATCTTCTATAAGTTTTGAGTTGAATGGC 45410 24 100.0 34 ........................ GTATAGTACTGGTGTATTACTTCCAGATATCCCT 45468 24 100.0 35 ........................ CACTCTCTTCAATCCGATTATATCAATTTACTACA 45527 24 100.0 37 ........................ GATTACTGCAGTGATGATGAAATATCGTGCTAATGAT 45588 24 100.0 36 ........................ GTTGTAGTCATTCCAGTAATGACTAAGATATTGTGT 45648 24 100.0 37 ........................ TGTAATACAATATTACGCTAGCAATACAACAAACATA 45709 24 100.0 35 ........................ ACACTCGCCGACTCTCTCTCATTTATTGCGAGATA 45768 24 100.0 35 ........................ GTGTTGTTCGAGACTTCTACTGCCATTAATATTAG 45827 24 100.0 36 ........................ GATTACTTTATGCTTTATTCAAATATAGAATAAAAA 45887 24 100.0 35 ........................ GTTGGGTATTTAAGCTTACGCATTATATTTTTGAG 45946 24 100.0 37 ........................ GATTACTGCAGTGATGATGAAATATCGTGCTAATGAT 46007 24 100.0 34 ........................ TAATATAGCGACCACAGAACTCTTGCTATATTTC 46065 24 100.0 35 ........................ CTCTCAAGAAATTCCAAAAGTTTATCAAACTCCTC 46124 24 100.0 37 ........................ TTTCTACATTATGTACTACCGATAAAACATGTGATCA 46185 24 100.0 37 ........................ TTCTCTTGGTTCAAAACCACTTAAATCTTCGTTATTT 46246 24 100.0 36 ........................ TTTTCATCAACATCTTGACTCCGGTATTCGACATCA 46306 24 100.0 35 ........................ AGTGGTCAGGGCTAGATATCTGCCCACTACCAACT 46365 24 100.0 36 ........................ TATCAAGAAAAATAGGGCTAGCCCAATTCCAATGAT 46425 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 137 24 100.0 36 GTAATAACGACAAGAAACTAAAAC # Left flank : TGTCTTTACATTCATATGTGGAATTATTTTTGAACAATTTAATATGTTGTAGGGCTTGGGATCTCATGAACAGTTACAGTAGGTGAGCCTCTACACTTACTTCATTGAAGTTTGTCCACTGCGTTAAAAAGTGTAATATATAAAAATTTTTAAGTTACAAATATACCTTTAAAAATTTTTAATTTTATTACATGCCTAGATAATTAAAAGTAAGAGCTTCATTGAGTCTAGTAGTAAACTGTCTAAAATTCATAGAATTTTATTATACACTTATTAGTCTACCAGGAGAACATCGAAGAAATTCATGGATAAACATAAAAAAAGAAATGGAAGTGGTATTATGTTATTTCCTTCCGTATCCTTACGTAAAATGGTTTTAGGGTTACCCTGTGTAGCCTAAAACTCCCTTCCGTACCTAAGGGCACAAAATTGACAATGAAGGAGAGAAAATATTTATAAACCAGGAAATAAGAATGTAAAATTGATGGAGGCAAGGATCA # Right flank : CTCCATGTAAAATATCATGACACATATATTAATTTTGAAGCAAAATTTTACGTCCCAAATGTTATCGCTTATGTAGGGTTATAACGTGTCCCTTGTGTGGTTATGAGAATCAGTACTCATACAAAGTTGATTACCATATTGATCCAATCTCGGCGGAGGGGGAGTCTGCAACGTTAAATGTTCCCTCCTTCAACTCTGCTGTAACAAATAAGGAAAAAGTTTTTATTCTCTCAATATTTTGATTTAGTTTATGAGGATAATTGACGAGACTAATTGACATAGTGAAGAGTAATCCGAAGATTCTCCTGTATTTGCTGCTTCCAGCGTATGTACCCATTTTTCTCACCGTTATAGCCATTATTGAAGCGTTGACGGCAGTCCCTCATTTAAGTGAAGTAACGCCTTTACTAATTATCACACCTATAATAACTGTGTTCTTCGTTCCCGCAATAGCATTCTCGTTGTACCCAAATCTACCTCTGGAGGTGGTAAGAACTGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //