Array 1 880-260 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXVC01000041.1 Synechococcus lacustris strain Tous CaSynechococcuslacustrisTous-C41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 879 36 100.0 37 .................................... AAATTGTAATTAGAAAGGGTGAATAGTGTTAATTAAG 806 36 100.0 37 .................................... TCTGCTTTAATATTTGCCTCCATGTTCTTTATAATGT 733 36 100.0 37 .................................... AAACTGTGAGAATACTTTTGCACCACTATTAGTAAAG 660 36 100.0 36 .................................... TGTCGCCGTAGCGACCAGGATATTGTTTCTCAAAGC 588 36 100.0 35 .................................... TGGCGTACCCATACGATCTGGCGAGACTTGAGATC 517 36 97.2 39 ...G................................ TACAGGTATTGAGGTGTTGGATCGTAGTCAAGCTCGATC 442 36 100.0 37 .................................... GCTTCCGAGATCGTCACGGAAATAGCCTCCGACATTG 369 36 75.0 37 ..........A..T.A..A.C.....TT..AA.... CAGTTCTGGTTAGCTCTGGAAAAATCGGGAAATGCAA 296 36 80.6 0 .C.........T............C.G...A.CT.. | C [268] ========== ====== ====== ====== ==================================== ======================================= ================== 9 36 94.8 37 GTCACCACTCGCTGGTGACATCACTTAATTGGAAAC # Left flank : TGCTAGCCAGAACCAAATAGCTATTGCCACCGTGATGCCCCAAAGCCATTTCAGGAATATGAATGCGAAATATAGAAATGCAATCAGTCCTATCAGAAGACCACAACCAGCGCCTCCATTGTCATCTTCAGTAGCCATGATGATTTCTCCGCAAGGGGCTAATGAGCTGGATGTCAGAAATGGCCGACCCAGGTATTACTAATCTTGAATGGGATTTGCTGTTGTTTAGAAGTGCTAGTGCGAAAAACGGCGAACTAAGAGCAGCACAGCTATTGCATTGGTATTTAAGAGTTACTTATTGATTTGTCCTTTAGCGCGCAGGGCCAAAAAACCTAAAAAGCCAGTGTTTACGTTGAGCTGCGCGCTCAATTGCAGCGCAATGGTTTTCAGCGCTTCCAATGTCTTAAAGTGGTTTGGTACAGCATTAAAATGAGTGTAAACTGGAGATGCGCGCAAACGGCTTCCAAACCCGTTGTAGCGCTGGCCTTTAAAAGGCCGCG # Right flank : CTCTTTAAAATAATAGTTTAAAAATCTACTATTTGGTCTGCTCTGGTAACACATCTAATAGCCTTAAGTTATCTGGAAATTGACAGAGTACTGGCAATTCTTTTCTTCTGTTATCTAAGATATTACGCAAATAATTACCTAGTAAATTGTCAATTTGTTGCCATTTAGTGCAGGTGATTGGCTTAAATCCATGYGCTAATATACTATTATTTCGTATATCCAGTGCGGAAACAAATTCTCCTCGATGAGTCTTCCATTTG # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCACTCGCTGGTGACATCACTTAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 10207-11482 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXVC01000052.1 Synechococcus lacustris strain Tous CaSynechococcuslacustrisTous-C52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 10207 36 100.0 38 .................................... TGCCTTTCTGCGTTACACTAACTCGGCAACCGATTATG 10281 36 100.0 37 .................................... GGTTAATTTCCAGAACCTTAATCGCAGGAGAATAGGT 10354 36 100.0 36 .................................... AGTGGAGTACTACAGTTCAGTTGTTCTCCAGCATCT 10426 36 100.0 39 .................................... AAATGTAAGAATTGCCCAGATGGTTGTGGTATAAACTGG 10501 36 100.0 35 .................................... TGCATTGCGGAAGCTTGCGGTCCAAAGGAAGAAGC 10572 36 100.0 38 .................................... ACCCCAAACTTTGCGCTGCGACTTGATACCGGTTGCTA 10646 36 100.0 35 .................................... CTTTAACTGTTAAATCTAATTTAGCGGCAGCAAAG 10717 36 100.0 37 .................................... TATGTAATTTTATCTCTGCTAGTTAGGGTCACTAAAC 10790 36 100.0 39 .................................... TTTAATGGCGGCAGTTTCCATGCGGGAGGATATCTCACC 10865 36 100.0 38 .................................... TTCTCCAATATTAACTTGAGAGTCACCAGTTAACACTC 10939 36 100.0 38 .................................... TGTTACACGGATAAAAGGATCGCCTGGGGTGATTTCAG 11013 36 100.0 38 .................................... GATTCAATAACTTTAACAGTGTGCCCGTAATCTTTATT 11087 36 100.0 37 .................................... AACTTAACCACGCTGATTCCATTAATATATTCCACTA 11160 36 100.0 36 .................................... GTATCTGAGAATTTAGAATCAATCGAGGTTCTAGTT 11232 36 100.0 36 .................................... TAGGTGTAATCGCGACCACCGTTGAAGGTGACAACA 11304 36 100.0 36 .................................... ATTTTCTTCCAAGTCTCCAATCATCACCAGGACATT 11376 36 100.0 35 .................................... CATTCATACTCATCTTCAAAATCTGCCATGGCGTT 11447 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== ======================================= ================== 18 36 99.8 37 GTCACCACTCGTTGGTGACATCACTTAATTGGAAAC # Left flank : AATCGTTGTTCCTCAGCGGCGATAAAATGACAAAAGAGCAATTATGGGTAATTGCATATGATAGCCCATGCAATAAACGGAGATCTAAACTCGCCAAGCTACTTTTAGGTTATGGTGTAAGAATACAACTAAGTGTGTTCGAATGCAGGTTGCGTAAAGCAGAGATTGTTATTTTGAAACAGAGGCTTAGTAAATTAATTAACACAGCTCAAGATAGCGTGCGGTTTTGGCCAGTTCCAGAGCAAAGTTGCTCGAAAATTGAACAAATGGGTGTTTCGGTTGATTCTTCTGTTTGGGAAGACCAAATAATTTAGCGCGCAGCACTCAAAAACCTAAAATCCTAATGTCTACGCTGAGCTGCGCGCTCGATTGCGCTGCAATAGTTTTTAGCAAATCAAACAGCTTAAAGTTGGTGCGATTAGCTTTGAAAAGGGTGTAAAATATAGCTGCGCGCAAATGGTCTCCAAACCCTTTGCACTGCAGGGCTTTAAAAGGCCGCG # Right flank : GTATATTATCAAATTACTTGAATAAATTTCTATGAATAATTACTCCCACGGCTTGCGCAGCTAAAAACTATAGTATCAAGATGTCTCAGACCGCAACTAACTTAGATTAATAGAGGATCTAGGCTCATAATTAAAAGCAGTAGCGTTTAATATATTTTATTACTTCCTCCGGTTTGTCCTCTAATTCATAGGCTTCTGCTTCATGTATTTTTGATGAATTTGATGCTTTGAGCGATCTTGAAACACTCTGCTGTTGAGCTTGATCAAGATTTGTTTGAATATTTAACGCTGATCCCTTGCAGTGTTGAGCAATATGAACGCCCTCATCGTAAATAGTTTCATTAACATAGTAGCTCACTGGGCTAGCACTATTTTTAATATTAGTTAAGCAGATTTATAGGCTTTTATTTTTTATATATCCAACGATTTGGTTATTTCTGCAGAACGTTGCATTTTGTGTAACTTGATAGTTAGCACGCAGTACTAGGTTTATGATTTCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCACTCGTTGGTGACATCACTTAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //