Array 1 4326-3563 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJOK01000002.1 Listeria monocytogenes strain NRRL B-33406 PROKKA_contig000002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 4325 36 100.0 30 .................................... GCAGTTTGCTGTTCCTATTGAGGAAGTGGA 4259 36 100.0 30 .................................... AATAGGGTATTTATGATGGCGCACGTCTAA 4193 36 100.0 30 .................................... GTTATACTTGGCGTAGTAATTATTTTTGGC 4127 36 100.0 30 .................................... AGCAGGTAAAGACATTACCATCTTACATCT 4061 36 100.0 30 .................................... TTGAAATCAATCACATAGCATTTTCCATCG 3995 36 100.0 31 .................................... AAGGCGGGTTTGTAGTATATGCGGATGGTAA 3928 36 100.0 30 .................................... ACTTCTCAAAAATGAGAAACGAGCAATCGG 3862 36 100.0 30 .................................... CGGCGCTCATGCAGACAACTAATAGTCACG 3796 36 100.0 30 .................................... GGGGATATGTCAGTCAATCCGCTATGTACA 3730 36 100.0 30 .................................... ATCAAGTTGTTGATGCTGTCGTTGGCACAA 3664 36 100.0 30 .................................... AAGCGATAAATTCATCTTGTTGCTGTGTCT 3598 36 97.2 0 .........................A.......... | ========== ====== ====== ====== ==================================== =============================== ================== 12 36 99.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCAACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCATATTTGAGAAATTAATTGAAATAGTACAAGTTTATAAATATCTATCTAAGAAAAAATTGTTAGTACTTATTAATGTGTGTTCCTATCTTACAGAGGAAGAACTGCCAGAGTTGAGGAGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAGCCTAGAAAGATAAAAGGATCTCCACATGTTACTTTAGATTCTGATTATTTTTTACACATGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGATAACAAAATAAATTTTATGTAACCCATAAAAAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTCGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATAGAGAATTTAACTATCGAAAATTTAATTTTAAGTGACTGAGAACTATTAATAACTAAAAATGAGAACCTATATAACTTTTAGCACCATCCGTTAAAAAAGGAGCCCCCAACCATGAAAAAACCCTCCATTATTTTTATTTTTTGCGCATTCCTGTTAACTGCTTGCTCAACCACTACAAAAGAAATCCCTAGACAAACCATAGAAGCTACCGGCACTATTGAACAAGTAGAAATGGAATCTGTTTTAATCAAAAATATCAAAATAAAAACCGAAAATAACGCGCCAGAACTGAGTGTGCGCTTCTACATCAGTGGAAAGTACCGCGACGAAACGGGAAACAAAATAAAACTAACCGAACTAAACAAAAATGACAATATAAAAATCATTTTAACAAAAGATTTCCCAATCCAAGAAACCTCACCAGCCCAAATAGATCCCAAATACGTACATAAAATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 110260-110872 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJOK01000010.1 Listeria monocytogenes strain NRRL B-33406 PROKKA_contig000010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 110260 29 100.0 38 ............................. GAAAAAAACGGCGAATCTGTAAGTATATGGGTAGATGC 110327 29 100.0 37 ............................. AGATACAATTCTTTGTTTGAGGCAAATTCTCCATTTT 110393 29 100.0 36 ............................. TTCGTAGTTTTGAACTCGCAATAACCGCTTTCGTAT 110458 29 100.0 37 ............................. CGGGTCAATGATGGTAATTTGGTCGTTGTCGTCTTCT 110524 29 100.0 34 ............................. ACAACATGGAATGACGAAAGATTTGTATATCCTG 110587 29 100.0 35 ............................. AATTTTTTCCGCGAAAAAGTGAAAGCATATTTAGA 110651 29 96.6 35 ..................A.......... GTAGTAGCTATTAAAGATAAGGTTTGGAAGGAAGG 110715 29 93.1 35 ..........T...T.............. TACTTTGAAATATCTAAAGCTATCTCACTGTTTAG 110779 29 96.6 36 ..............T.............. TGTAGTCATCAACTTGTTCAAAGTATTTCACTATAG 110844 29 72.4 0 T.....A.......TCA.AG...A..... | ========== ====== ====== ====== ============================= ====================================== ================== 10 29 95.9 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGATATTTTACTTAAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAATCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGCGCAAAAAACACCGGGAATCGACAGAAAGTTGTAAGTGGTTGGAAGAAGGGAAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCCCTTCATATAAACCATCCATCAAAACCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATTATTAAACTCTTTCAAAACATCCGCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCTTCTGTTTCTTTCAAGTTTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTACTGCTATATTCCATTTTTTCTTTATCGTAATCACCAATTTTCTTGTTTTTCACTAGTTTTA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 126455-127633 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJOK01000010.1 Listeria monocytogenes strain NRRL B-33406 PROKKA_contig000010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 126455 29 100.0 35 ............................. ATGATTTTGGACGCAGGTATTAAAATTCTGATGGC 126519 29 100.0 35 ............................. CTAAATATGGCACTTGGTTAATCACTAACACAGAG 126583 29 100.0 34 ............................. TTGTTATGATATACACCTGTTTGCGGTCTTCTAA 126646 29 100.0 36 ............................. GTTGTTTCAAAATCTAGTACTACATAACTCATTTAT 126711 29 100.0 35 ............................. TGTGTAGCTTCTAATTCTGCAAAGTGTTGTTGAAT 126775 29 100.0 36 ............................. ATCATTGCTACAGCATCGAATAGCTACAGCATCAAT 126840 29 86.2 24 ........................C.CTC CTACGCTTTTCTTATTTTTGTAAA Deletion [126893] 126893 29 100.0 36 ............................. TTTTGTTAGTTGATTGCACCGCACCTTTAGCGCCAG 126958 29 100.0 36 ............................. AAGATAATAGTAAGTTTGCATTATCTTGTTGCGTTT 127023 29 100.0 38 ............................. TTCGTCTTTATATTTTTTGAACATAAGTAGCCACTCTG 127090 29 100.0 36 ............................. ACGCTCTCTGCGAGCTTTTGAGTTACCTTAGCCAGT 127155 29 100.0 36 ............................. GTGCTACCTGTGGCCGGGTTTATTGTAGAGTAATTC 127220 29 100.0 38 ............................. ATGGCAAGCGCATCTGTACCTGTTTTTGCTAGTTTAGC 127287 29 100.0 35 ............................. AGATTCAGGAATAGCAGAATGGCGATACGAAGATG 127351 29 100.0 34 ............................. CATAAAATTCTGCCACCGGGAAAAAGTCGCTATC 127414 29 100.0 34 ............................. TCACTCGCTTTTCTTCGAGTTCACTTAAAACCTT 127477 29 100.0 35 ............................. GCCTCATCAATACTTTTCATCATCCCATTAACTGA 127541 29 100.0 34 ............................. GGTGTTTGCCTTGTTAACTTGTCACGAGAGATAG 127604 29 93.1 0 .......................A....C | C [127627] ========== ====== ====== ====== ============================= ====================================== ================== 19 29 98.9 35 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTAAAGTTTTTAAGCGAAAATCTAAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGTGG # Right flank : CTTCCTCTTAAAATTCAAACCCAAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTTGCTCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCAGCAAATCCTGCTCCTGCGAAAAACAATCCCCACACAAGACCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACGCCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATACATATGCTCAATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTGAAAAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //