Array 1 1840441-1841248 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP054039.1 Listeria monocytogenes strain PNUSAL001122 chromosome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
   1840441	    29	  96.6	    36	..............A..............	ACATCCATATGAACATGAAAACATTTATACATTTTT 	
   1840506	    29	  96.6	    35	..............A..............	TACCATACACGAGTAGGCGCATAATTGTTACATTC  	
   1840570	    29	 100.0	    35	.............................	ATTGATGCCATAATCGGTTCTAACAACGGCATTCA  	
   1840634	    29	 100.0	    37	.............................	ACATACGGATGATATTAGCAATCTCCTCGTTTATCCC	
   1840700	    29	 100.0	    35	.............................	TTACTAGGAGACTTACTAGCACTTGAAGAACTACC  	
   1840764	    29	 100.0	    37	.............................	TAGCCACGGTGCCTTCTGCTGAAAATTGAGATACTTT	
   1840830	    29	 100.0	    37	.............................	AAACTACTAGTTTGCGATCTGTGCGGAGGCACTGGAA	
   1840896	    29	 100.0	    35	.............................	AATCAAGGCTGATACTACACAGCAAACTACTTCTT  	
   1840960	    29	  96.6	    37	..............A..............	TTGTTATGAGGATTTTAAATAATAGTTATAGCTCCGA	
   1841026	    29	 100.0	    36	.............................	ATACCTTTTGCAACTTTAAGCAACCGTGAATGGAGT 	
   1841091	    29	  96.6	    36	..............A..............	CGCTTCGGCTCTCCGTTCAAATTTACTTCTGGATAC 	
   1841156	    29	  86.2	    35	A.............AA.....G.......	AACTTTGGCAATGACTTTTATTCAAATGTAGAAGA  	
   1841220	    29	  82.8	     0	......A........CA.A....A.....	|                                    	
==========	======	======	======	=============================	=====================================	==================
        13	    29	  96.6	    36	GTTTTAGTTACTTATTGTGAAATGTAAAT	                                     	       

# Left flank :   GGCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCAGGGATCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG
# Right flank :  TCTCATTCAGATTTAACTCCACCACCATCCACCAAAACCAAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTC

# Questionable array : NO	 Score: 6.05
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTATTGTGAAATGTAAAT
# Alternate repeat :   GTTTTAGTTACTTAATGTGAAATGTAAAT

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:79.31%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-11] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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