Array 1 27628-25221 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009439.1 Streptomyces glaucescens strain GLA.O plasmid pSglau1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 27627 29 96.6 32 ....................A........ TTCGACGAGCCGCAGACCCTGGACCTGGTGGC 27566 29 82.8 32 ...........A.........G....TTT TTGGATCTGAAGTCGGGCGGCGGGCCGGCTGT 27505 29 96.6 32 T............................ GAGATCCGGCTTGTCGGCCAGGGCGCGGGCAA 27444 29 100.0 32 ............................. GACACAGCCGGCCGCACCTCCCGTGACCGGCT 27383 29 100.0 32 ............................. GCATCGCTCTGTACAGCAGCGGGATGCCCCGG 27322 29 100.0 32 ............................. TGGCTCGACGCCGGCGACAGCCTGCGCACCAC 27261 29 100.0 32 ............................. GGCACTCAGCGATACCAGAAGCCACCGAACGA 27200 29 100.0 32 ............................. GGGTACCAGGCCGGACCGAAGTTCACCAAGTA 27139 29 100.0 29 ............................. CAGAACGACGAGCCCACATAGGTCTTGTC 27081 29 93.1 32 GG........................... TGGGTCGCGGCAGGACGCATCCCCGTCCACTC 27020 29 100.0 32 ............................. CGCCAGGAACTGCCAGGAACACGTCTCAGCCA 26959 29 96.6 32 ............................G GGGTGACCGCTGTCCGCGCGCGGTGCTGCCAG 26898 29 100.0 32 ............................. TGGCCGTTGGCGTCCTCGTCGAGCTGGATGTC 26837 29 100.0 32 ............................. ACCGAGTAGCGGTTGGGAGATCCGGCTATGAC 26776 29 100.0 32 ............................. GACCGCGGGTGCAAGGTCGACGTGCCGAAGCC 26715 29 100.0 32 ............................. GACCGGCGCGGCTTCGAGGAGACCGCGCAGAA 26654 29 96.6 32 ............................T CAGATCCTGCTGTTCGTCGGGCGCAAGGGCAG 26593 29 100.0 34 ............................. CCCCCCGCAACGGGCGCCCCTACCGCCGCCTCGT 26530 29 100.0 32 ............................. ACGGGCACCTGCCCGAAGATCCGGAGCCGACC 26469 29 96.6 32 .........T................... TCCCACACGAGGGACGTGGCGCCGTCGCTGGT 26408 29 100.0 32 ............................. CGACGCCGGAAGAGTGGCGCGAGCTCCTCGCC 26347 29 100.0 32 ............................. GCGCGCAGCGCGTGCACGATCTGCTCCCGGGT 26286 29 100.0 32 ............................. GAGGTGTGGGAGGCCCGTCCCAAGTGGATGAA 26225 29 100.0 32 ............................. CTGCCGCCCGCCGACGAGCACGAGCTCTCCCG 26164 29 96.6 32 ........................A.... TTTCGCGTCCGCGACTGCCGTTGCGGACTCGT 26103 29 100.0 32 ............................. CGGCAGGACCAGCGGCCCGGGCAGCTCGTCCA 26042 29 100.0 32 ............................. TCCTCAATCTCCCGGCCGATCTCCATTGCCTC 25981 27 93.1 32 ......................--..... TCCTCAATCTCCCGGCCGATCTCCATTGCCTC 25922 29 100.0 32 ............................. TCGGTGATGCCCGGCACCATCTGCCAGTCCGA 25861 29 100.0 32 ............................. GCGGCGGGAGGGATCGGGGGAGTCTGAGGGGG 25800 29 100.0 32 ............................. CTGCCCGGGTCCGTGAACGACTCGGCCACGGT 25739 29 100.0 32 ............................. TCGTCTCATCAAGGCCGCTCCGCACCTCGGGG 25678 29 100.0 32 ............................. ATGGCCGAGCCCGTGACGGTGCTGCTGGACCA 25617 29 96.6 32 ............................T CGAAGGCCGCAGGTCAGGTGCCAGATCCGCGT 25556 29 100.0 32 ............................. GGCGCATCGAACCTGATCAACGTCAGCGGCCT 25495 29 100.0 32 ............................. GCGACCCGCGGGTGGCGCCGCGGCGACCGCTG 25434 29 100.0 32 ............................. AGCCCGCTCCGCGCACTGGCCGAGCAGATGGA 25373 29 100.0 32 ............................. TGGATCGTCTCGCCGGACACGTTCGAGGAGCC 25312 29 100.0 32 ............................. CCGTTCCGCCGACTGCTGTTCATCGGGCTCGA 25251 29 89.7 0 T...A....................C... | CG [25237] ========== ====== ====== ====== ============================= ================================== ================== 40 29 98.4 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GCGTGCGGCCCATCCACGCAGATGGGCCGACAACGAGACCGGCGGCCGACCTGGATGGCCGACCGCCGGGGTGGCGGTGGCCGTCAGACAAGGAGCGAACTGATCCACTGCGTCAGATCCAGCTGCAACTGGATCAGCGCGACTACGAGGATCAGAACCTCAACGTCTGACGGCCCATCGTTTCCGAACACTGCGTAACCCGTCTTCTCGAAGGTCCCTCCGATGGCTTTCGAAGGGGGTCGGAAGCCTCCCTCCGCCCTAGGTCCGAAGGGCGGGTGAGATCCGCAGCACCGCGACAACCACTCTAGGGCGATGGGCGGGGCAACTAGGGCCCTTGCCGCAGAAGTTGGACTTAACTACACGCCGGTAGCTACCCCATAGAGGTATGCACCGGGCATAGGGGCCCGGGTTGAGTCGGGCAACCACCCTGGGAGCTGCCCGGCCCCCAACTCAGCCAGCCAACGGCCCGGGGAACCAACACGCCCGTATCCTGATCCCTA # Right flank : GATAACGGGCTGTGTGTGGCCGGTCGGCCTGGTGACACCGGTGTAGGTCATGAGATGGCCTCCGGGAGCAGTGCGTGCAGGTGCGCGGGGAGCTGGAGAAGGACGTGCTCGTACACGGCGAGCGGGACGCGCCAGGGGCCGAGCTGGCCGTCGCACGGGACCGGCAGCGCCAGAGGGTGGACGTCGTCCAGGTTGACGTGGACGCGGTCGGGCTGCGCCCAGGGGCTGCACGCCTGGCCGGGGTCGGTGTGGGAGCCGGTGATACGGACGATGCCGAGGACCGCACGCGTGGGCAGCTCGAGGCCGCGGATCGTGCGGGCCACGAGCGGGTCACCCAGCGCGGGCCGGTCGATCTCGGCTGCGGCGTGCAGCAGGCGCCAGCCCGGCGCCCAAACCCGGGGCCGGTTCTCCACGCGCTTGCCGCCGTGGAGGATGCAGGCCGCCCAGGGCTGCTTGATGGTGATGCCCCGGATGGCATCCGGGGCGTAGAGCGTCGGTGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29525-28317 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009439.1 Streptomyces glaucescens strain GLA.O plasmid pSglau1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 29524 29 93.1 32 .....T...........T........... ATGGTCGACCAGCGGCGCCGCGGACGGCACGC 29463 29 96.6 32 A............................ CCCGGGCACGCGACGGAGGTGACGCTCGATGA 29402 28 96.6 32 ........-.................... CGGGACGGTGTGGCGTCGATCGCTTCGCAGGC 29342 29 100.0 32 ............................. GGCGGCACCAGGGCGGCCACGAACCCCATGCC 29281 29 96.6 32 ............................T CTCGTACCGGACGCTCTTCCTTCGGGTCACGG 29220 29 100.0 32 ............................. CGGCCCAGACTGGACCGGACCTGACCGGGCGG 29159 29 100.0 32 ............................. GCCCCGGCCGACACCTACCGTCTCCAGGTCCG 29098 29 100.0 32 ............................. GGGTAATCACGCATGAGAAGCGCGATTTCCTT 29037 29 100.0 32 ............................. GCGGTGACCATGTAGCCACGCTTCGGCCCCCA 28976 29 100.0 32 ............................. AACCAGGCCGTCCAGGGCGGCGTCACGGAAGG 28915 29 100.0 32 ............................. GTGCCCGGCAACGACCACTGGGACCCCGGGTC 28854 29 89.7 32 ...........A........A....C... ACGAAGACCGGCCGAGCCTGGGAGCTGGGGGT 28793 29 79.3 39 ..A........A.............GGGA TGGTCCCTCGATCGGCACCACGGTGATCACGAAGTGGGC 28725 29 89.7 32 .....T.T...A................. GCTGCGGCGACCGGCTTGTCCCAGAGGCCGAC 28664 29 82.8 39 ...........A.............GGGA TGGTCCCTCGATCGGCACCACGGTGATCACGAAGTGGGC 28596 29 89.7 32 .....T.T...A................. GCTGCGGCGACCGGCTTGTCCCAGAGGCCGAC 28535 29 82.8 39 ...........A.............GGGA TGGTCCCTCGATCGGCACCACGGTGATCACGAAGTGGGC 28467 29 89.7 32 .....T.T...A................. GCTGCGGCGACCGGCTTGTCCCAGAGGCCGAC 28406 29 93.1 32 ...........A..T.............. GTCTGCCACCACCGGACGCCGGGCGCGGGCGC 28345 29 93.1 0 ...........A.A............... | ========== ====== ====== ====== ============================= ======================================= ================== 20 29 93.6 33 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GGGAACGAGCGCACCGATGATCGCGTCTGGCTCGGCGTCCAGGTCCCGCCCGACCATGAGCCCTCCTTGGACTGTCAGTCCAGTGTCTGGACTGACAGTCCAACCAGGCGCTCAGGCGTGTGCGTGCGTGACGTGGTAAGCGCGGGCCGTGTGGCCCGGGTTCTCGCTGTTGTGACGCCCCGCGCCGGTGACCGCGGCGCTCTCACTGAAGAAGATCATCGTCCCGTCCGAGCCCCTGGTGTCCAGCACGAAGCACTGTTCCTGCCGGCACCAGATGGCCCAGTACGTGTCGGCTTCGTCGAAGCCGCTGCTGAGCTCGAGAACCTGTTCCTCGCTGGGGTTTTCCATCAGAGATCGCCTTCCACCGCTCGATTTCCGGTTTCCGCGCGACGCGTTGTGCTCTCCTACCAGCCTGCTCCCCCGCGACAACGGCCCGCAACACCACGTCAGTCCCGCAGGCACCACGCCACGAACCGCCCTGGGGCCGTGTAGGTTCCATC # Right flank : AGCCGGAACAGGAGCCGGAACACGAACAGCAACGACACACCTCACCAGGGGTGATGCGCAGTTCAGCAAACATGAAGGCGCGTAACTTTGGTCGCGGAAAATGGCACAGCGATGTGGATTTCACATCCCGCCAAAGCGTTTCGCTGCGATGAAAGTGCAGCGCCGTACGGCCAACCTTGCCTACAGTGGGCGTGCGGCCCATCCACGCAGATGGGCCGACAACGAGACCGGCGGCCGACCTGGATGGCCGACCGCCGGGGTGGCGGTGGCCGTCAGACAAGGAGCGAACTGATCCACTGCGTCAGATCCAGCTGCAACTGGATCAGCGCGACTACGAGGATCAGAACCTCAACGTCTGACGGCCCATCGTTTCCGAACACTGCGTAACCCGTCTTCTCGAAGGTCCCTCCGATGGCTTTCGAAGGGGGTCGGAAGCCTCCCTCCGCCCTAGGTCCGAAGGGCGGGTGAGATCCGCAGCACCGCGACAACCACTCTAGGGC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 32483-30090 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009439.1 Streptomyces glaucescens strain GLA.O plasmid pSglau1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================= ================== 32482 29 75.9 31 ....GG..A....A...A.....AA.... AACCCGCCCGCACCCGAACGGGCCGGAACAC 32422 29 79.3 77 G...C...G..AT............G... GGCGTACGGTGCCTGCCTTGATCTGCTCCCCGCACCCGGGGGTCCGCGTGAACGTGAGCCCCCAACTGGCTGGCTGG 32316 29 86.2 25 .......T...A.A......A........ TCGAAACCCGCCGCGAGGTACGCGA Deletion [32263] 32262 29 82.8 33 .C...G..T..T.......C......... GGTAGGCTCTCCATCAGTGCCGAAGTTAATGCG 32200 29 89.7 32 ...T..........A..........C... GGGGTCATTGACGCCAACGTGCGCGCGCACGC 32139 29 89.7 32 .C....T.......T.............. CCTAAAACCCGCAGTTCACCTGCGGGTTGCGG 32078 28 89.7 33 ..............T......T...-... AAAGGAGAGGATCAAGGAGATTGCCGACAGCCG 32017 29 93.1 32 ..A....T..................... ATCCTCAGCGACGAGCCCCGGCTCAAGACCTT 31956 29 100.0 32 ............................. GAGCGGGTGTGGAACACCCCGGACGCGCTGAC 31895 29 100.0 32 ............................. GACACAGCCGGCCGCACCTCCCGTGACCGGCT 31834 29 100.0 32 ............................. CCCCCGACCGGCGACGGCGACGACGGCCGCCA 31773 29 100.0 33 ............................. CACCCTGTCCGCGGTGCTCGGCCTCATCGTCAG 31711 29 100.0 32 ............................. ACCCCGAAGCCCTGCCCGAACCCGGAGCGATC 31650 29 100.0 32 ............................. GCGCGCTGACCTGCGCGGTTGCAGGTTGACGA 31589 29 100.0 32 ............................. AGCGGGCCGCCGAAGAGCAGCGCGTCCGCGAA 31528 29 100.0 40 ............................. TGGAAGGGGTTGGTCGTGGCGGGACGCTGCGGGCGCGGAC 31459 29 100.0 32 ............................. GCGTCGCTCATCTGCTCGGGCTGCCCCGCAGC 31398 29 100.0 32 ............................. GCGTCGCTCATCTGCTCGGGCTGCCCCGCAGC 31337 29 96.6 32 ....C........................ CGGCACGCGGTGCTGTGGGACATGCGTGACCG 31276 29 100.0 32 ............................. TCCTCCTGCGACAGCTCCGCTTCGCGTCGCAA 31215 29 100.0 32 ............................. GCAGAACGCAGGCTGAGGAATGCATTGAACGT 31154 29 100.0 32 ............................. GGGGCGCCCGCCCCGCTACTGCTCGGCCACGT 31093 29 100.0 32 ............................. CCGCAGCCCCACAACAAGGCACTCGAACTCGG 31032 29 100.0 32 ............................. CCACGGGCGGGACCGACCGAGCCGGGAGAGGT 30971 29 100.0 32 ............................. GCCAGCCCGGGGACAGCCTCCGATCCACCCAC 30910 29 100.0 32 ............................. AAGGCGAACAACACCACGGGCGACATCATCAG 30849 29 100.0 32 ............................. GACTACAGCCTCGAGGCCGCCTCCTGGTCGTC 30788 29 96.6 32 ............................T CGAAGGCCGCAGGTCAGGTGCCAGATCCGCGT 30727 29 100.0 32 ............................. GGCGTCACGGACTGCGAGAGCGGAGAGGTGCA 30666 29 100.0 32 ............................. TCCCTGCCGGGCCGTCTTGCGTTTCCGGGCCG 30605 29 100.0 32 ............................. AGCCCGCTCCGCGCACTGGCCGAGCAGATGGA 30544 29 100.0 32 ............................. AGGAAGCAGAGAAGCAATGAAGATCCTCGGCC 30483 29 100.0 32 ............................. CAGCCGGCACGACCGCGGCCGCCGTCGCCGCA 30422 29 100.0 32 ............................. GGGCAGCTCCAGCCGTGCGTGGCCGTCGCCAA 30361 29 100.0 32 ............................. CAAAGTGCTCGGCCTGCGGCGAGTCGATCCAC 30300 29 100.0 32 ............................. CGCCGCCAGCACCTAGCCGCGTTCAGCCGACG 30239 29 89.7 32 ............G...G........C... AGGCAGCCGACGACGCGGTTGTTGTGGCCGAA 30178 28 96.6 32 ........................-.... AACGCCGCGTTCCCGCAGCGCGTCGTCCTCGG 30118 29 89.7 0 ....................C......GG | ========== ====== ====== ====== ============================= ============================================================================= ================== 39 29 96.3 33 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GACGGCGACAACGGAGGCATAGCAGGAATCGCAGCCGTGTCCCGCCTCGGAGAAGAATCAGTCGACTGCCTGATCCTCTACCAGCAGCCGGACCGCACGATCACCTACGACCACCAAGGCCTGCTGAAAGCCGACCTCGGCCAACGCTCCCCCAACCGAAACCTGACCGCGTACCGACGCCAGCAAAAAGACCTCCTCGCCAACACCATCGCCATCCCCGCACGCTGGTGGAACGGCCGACGCAGCCTTCCCCCGACCACTGACTGGCCCACACACCCCCAGCCTGCCTTGAGGAACAAGCACGTCATCCTCATCACCCCGGAGGGCACCTGCCTCAGCGGCCCCGTCGGCAGACTCCGCTACGACCAAACCACCGGTTTGGAGCGCATGTAACCGTCCTCCCCACACAGCGAGCACGGCCCATAGACTTCAGGCCGTTCCGCTCCCCGCGTTTGCCGGGCTCGGCTTCCGGTTCATAAGCGCCGCCCACTCAGCGTCAT # Right flank : CTGCCGGTAGTCGTGCAGCACGACTTCGCACAGCGGGCCGAAGGTGGCCACAGTCCGTCGACGACGGGAACGAGCGCACCGATGATCGCGTCTGGCTCGGCGTCCAGGTCCCGCCCGACCATGAGCCCTCCTTGGACTGTCAGTCCAGTGTCTGGACTGACAGTCCAACCAGGCGCTCAGGCGTGTGCGTGCGTGACGTGGTAAGCGCGGGCCGTGTGGCCCGGGTTCTCGCTGTTGTGACGCCCCGCGCCGGTGACCGCGGCGCTCTCACTGAAGAAGATCATCGTCCCGTCCGAGCCCCTGGTGTCCAGCACGAAGCACTGTTCCTGCCGGCACCAGATGGCCCAGTACGTGTCGGCTTCGTCGAAGCCGCTGCTGAGCTCGAGAACCTGTTCCTCGCTGGGGTTTTCCATCAGAGATCGCCTTCCACCGCTCGATTTCCGGTTTCCGCGCGACGCGTTGTGCTCTCCTACCAGCCTGCTCCCCCGCGACAACGGCCC # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-33] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 40702-42864 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009439.1 Streptomyces glaucescens strain GLA.O plasmid pSglau1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================= ================== 40702 29 72.4 109 .AA...T.......A....A...C.G..A GATGCACACGAAGACATCGACCGATTCCTTGCGCAGGCAGGGACCACCACAAACCCACCTTCCTACCGCGTGAGCAAGTGTCCCGGTCGCCATGCCGCTCCGCCGGGGG 40840 28 82.8 29 ..-.....T..G....T......A..... CCGCTCGCCATCTGCTACGGCTCCTGGAA 40897 29 89.7 31 ....G......G...A............. GTGATCGCGTAGGGACTAAGGCGAAGACGAA GT [40903] 40959 29 79.3 32 T...CTGTT.................... ACGTGCAGGTACGCCTGGAGACGGAACGCCGT 41020 29 93.1 32 ..........T.............C.... TGATCGCGGATCTCCTGGTTGAGCAGGGCGGC 41081 29 89.7 28 ...T.............C......C.... CCGCCCGCCCGCATGGCTGGTGCAAGCA 41138 29 96.6 21 ..................A.......... CCGCTCCAGGATGGCCTCGCT Deletion [41188] 41188 29 100.0 32 ............................. CCTCAGAGCCTGACGGTGACCCGCTCGATCAA 41249 29 100.0 32 ............................. TACGACAACCACGGCACCGTCTGGGGCACCGA 41310 29 93.1 32 ....CT....................... TTCGGCTACCTCGTCGACCGCCGGGACGCCGT 41371 29 100.0 32 ............................. GCGACGAAGGCGGCGCCGCAGCCGCATGTGTC 41432 29 100.0 32 ............................. CCCGTGAACAACGCGAAGGCCGCCGCGGTGAT 41493 29 100.0 32 ............................. CAGCCGTAGAGGGTGCTCGCGCTCACCTGGGC 41554 29 100.0 32 ............................. ACCACGGCCACCCTGGAAGGACCGGGCGCGCT 41615 29 96.6 32 ...G......................... TCCCGCCCGGCGTGACGGCCGATCAGCTGCTT 41676 29 100.0 32 ............................. TGGTTCAGGATGCGCAGCTGGTGGCCCGACAG 41737 29 93.1 33 ..........G........T......... CCCCCACCCCCCGCACAAGGCACCCATCACGAC 41799 29 100.0 29 ............................. CCCTCATGGCACCTCGGGAGCCGGACGGG 41857 29 100.0 32 ............................. ATGGTCGGCGCGGCCACGATCAGCAGCCGCAG 41918 29 100.0 32 ............................. TACCTGCCCTTCCAGGTCTACAGTTTCTTCGC 41979 29 100.0 32 ............................. TGGGCCTGGACCTCGTTCAGTTTGACCAGTTC 42040 29 100.0 32 ............................. AGCGCGGGCATCTCCACCCCCTCCAACGCCCT 42101 29 100.0 32 ............................. CCGGCCCCGCGCTGCTCGCCAAGCTGGAAGCC 42162 29 100.0 32 ............................. CCCCGCCGCAACGTGGTGCGCGACACGATCGA 42223 29 100.0 32 ............................. TCGTGGGCACCGAAGCCCCAGATCGCGGCGAT 42284 29 100.0 32 ............................. GAGACGGCGTCCGCGATCGCGACCGCCGCAAC 42345 29 96.6 32 .......................A..... GCTGGCACGGGCGAGGTCCGGGCGCGGGTCGG 42406 29 96.6 32 ....................A........ CTTCCCGTCGGTCTCCCAGGCGGGCTCGGCTG 42467 29 100.0 32 ............................. GCCTTGGGCGCCCCGTTCATGGGCCGCCCGAC 42528 29 100.0 32 ............................. GACGCGGCGCCTGTGTCGGTCCCGGCTCCGGC 42589 29 100.0 32 ............................. ATCGGTGACCCGAAGCAGTCCTCGATGTACGT 42650 29 96.6 30 ...................A......... TGGCGCGGGCCCCTTCGCCATGCTGGGTTC 42709 28 93.1 32 ..-..............A........... TCCAGCCCGAGGGCTTCCGCACATGGACCGTG G [42714] 42770 29 100.0 37 ............................. CAGGCGCGCCGCGCCTGTACCGGGAGACGCACGGCAC 42836 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================================================================================= ================== 35 29 96.3 34 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GGAGCCCCATCCCACGCGCCGCGCTTGTGGACGCCCCTCACCTGATCAAGGTCGACCAGGCCATCAGAGCCGGCGACACGTACACCTTCCGCGCCTTCATCAACCCCGTCCGGGCCGTCATGCCCACCACCGGACCAAAGAAGGGCCAGCGCGGGCGACGTATGGCCAGCATGTCTCCGCACCACGCGGCCGAGTGGTTCACGCAGCGACTCCAACCTGCAGGCGAGTCCGCCATCGGGCCGTCCGGCATCAAGCGGATCGGTGCCAACGCCGATCCCGCCCGCATCACCACCACGATGCTGCCGCCACTCGTCTCCACAGAAAAGCAGGGACTGAAGGTCGTCCGTGCCGAAGTCCGCGGACAGCTCACCGTCACCGACCCGGCCACCTTCGTCCACATTCTCACCGAAGGGATGGGGAAAGCCCGCTCCTACGGAGTTGGCCTCGTCCTCGTACGCAAGTAACATCCTCACCGGCCGGATTCCCTGATTCCGGCCGGA # Right flank : CGGCACCTTCACCTCGGCGTGGGTCGGCGCGATCTGCTCCCCGCAGGTTGACCACAGCCGGGCCAGCGCCAGCACGGCCCGACCTCGGCGCGAATCTTAGATAGCATCCGCGTCGAGGGGTCTGTGGGGGCCTTCTGCGGTCGCCTTAGCGATCAGTGATGGGTCGAGGGCCGACCCGTTGGCTTCGACGAGGAGAAGTACAAGCGCCGTAACGAAGTCGAGCGGACGATCAACGCCCTAAAAAACTTCCGGGCGGTGGCCACGAGGTACGACTAGCGGGCATACGTCTTCCGGGGCACGGTCGCCCTCCCAGCGATGCGCCTCTGGCTACGTGCATGAGACATGGCACACGAGCCCCCAGTCCCGATCAATACTCCGTCGCCACCCTCAATCACAGCCAATAGAGTGCTGAAGGCATGACGGCTCTTAAGACCTTCAGCTTCGTGCGCCACGTCGATGGCCTCCGCTACCACTTCCAGACCGACGGCGAGCGCAATGGC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.20, 8:1, 9:0.99, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [32-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //