Array 1 545690-546205 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMTQ01000001.1 Klebsiella quasipneumoniae strain NFIX11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 545690 28 100.0 33 ............................ TAAAAATGCGTACATTAAACGTTTTCACATTTA 545751 28 100.0 33 ............................ CAAACGAGGTACACAAAATGACATACGACGATA 545812 28 100.0 33 ............................ CAGACGGATCGCTGTCGGTTACGGCTGTTGTGT 545873 28 100.0 33 ............................ TGCCGTCAGTCATGCGCAGCGGTCCCCAGCGGT 545934 28 100.0 33 ............................ CAAAGTCTATCTCGGTTTCAAGCAGGCCCTTAG 545995 28 100.0 33 ............................ CAGCCCGGCCCGTCAGAGGCTGATTGCTGTGTA 546056 28 100.0 33 ............................ TATCATGATGCGTACCGAGTGGGGGGCTTCGGT 546117 28 96.4 33 ...........A................ CGCAGAAAGCACGCTGGCTTCTGCTATCAGCGC 546178 28 82.1 0 ...........A..........G.C.CG | ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.6 33 GTCTTCCCCACGTGCGTGGGGGTGTTTC # Left flank : GGTCAGCGTCGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTTGACGGCGCGGCGCGGGATAACAGTCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGCACCGAGGGCGACGACTTTCCGCTACGCGCCTACGGAACCGCGCTGCGCGATGCTGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACCACGAGAAGCCACGGAAGGCAAGCGTCAGGTTATAACGCTACGCTATGGGATGACAAAAGCACTTTGCGTCCGGCTATGGGCCGGGCAGGCCAGTAGGCTAGACCGATCCTGGTCAGCAGCCAGTCGACGGTGGTGATAAGGGGAGATACTTTTTCGTTTGATGAATGTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : GTGACCGTTTATCTGATGCAGACGCATCAATGCGTGACATTATGGTCCTTAACGTACATCAATGTCTTCGATATTTCGTTTAGCCAGCTCCGTCCTATATAATTTTTATATGATTTCACTTATAAATATTCGTGAACTGTGTTTGTTTTATACTTTCTAAAATGACGTATAAAGCGTTAGACTTTATGACTCATCTGGAGATATCGCTCTCCCTATTAATTATTTTTAATTTTTATATTATTATTTTAGGTTTTTATAATAAATTCAGTCTGTTGTGTGTGCTTTTTTATTTTATAAAAAGTTATTTATAAATCCCCCTATTTTTAGTATTAATAAAGGGCACATGATTTTTAAGGAAAAATTCCATGAGGCGCTTAACCAGGGTTTCGCTTCAAAATCAACATGCCACCGCGGCGATAAGTTATGAAAACTGCCCAGCGAAAACCCGAAGGTTGAATGATGGCCGCGTGGTGCAGGGACGCTCGGTGTTGAGCCATTGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGTGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 554911-555978 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMTQ01000001.1 Klebsiella quasipneumoniae strain NFIX11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 554911 28 100.0 33 ............................ GAAGACGGGGTGGTAGTACCAGGCGTCCGGGTC 554972 28 100.0 33 ............................ CAGAATCACCGCGCCGCCGCTGAAAAACTGATC 555033 28 100.0 33 ............................ TACTGGCTGGCGTACGTATTGCGATAGCACGGC 555094 28 100.0 33 ............................ CAGAATCACCGCGCCGCCGCTGAAAAACTGATC 555155 28 100.0 33 ............................ TACTGGCTGGCGTACGTATTGCGATAGCACGGC 555216 28 100.0 33 ............................ CTGGATGCTTCGCTCACGGTAGTAGCGAACGAG 555277 28 100.0 34 ............................ TGGCTCACAGGACGGCGTAAAGGGGGATTTTGTG 555339 28 100.0 33 ............................ TCCCGTCCGGTAGCAGACCTAAATCCTGGCGAT 555400 28 100.0 33 ............................ TAAGCCAGAACCTTTCCGCATCCTCGATCGCCG 555461 28 100.0 33 ............................ TGCTCCCCACATCGCACAGAGGTAAGACATGTC 555522 28 100.0 33 ............................ TATCCCCTAGAATATAGCGGCGATAATTTGTAT 555583 28 96.4 33 ..........T................. TGTCTGCATGAGCGGTTAATTGAGGCCGGAGTG 555644 28 100.0 33 ............................ CAGTGGCGGGATAAGCAGACTGGAGAGCAAAAA 555705 28 96.4 33 T........................... CATGGCACATTACTGGAGAGACTGACTCATGGC 555766 28 100.0 34 ............................ CGAGCAGGGGAGCAACAACGCGAGAGACAGCATG 555828 28 100.0 33 ............................ TGAACAGGAGAGAGACGATGCGCCTGAGCATGA 555889 28 100.0 33 ............................ GGTCAAAACCGCGGCCCCGGCAACTCAACGGGA 555950 28 82.1 0 T......A....TC..........C... | C [555971] ========== ====== ====== ====== ============================ ================================== ================== 18 28 98.6 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAGCGGCTCTGTATCGATCTGGCGTTTTCGCTGTCGAGGGAGATGGCGGGTCGATATGATAAACATAAAGTTTCTGAGGCATTCAGAAAACGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCCGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATTTGCCGCCAGCGGTTCGTGGACGAATGAAGCTATGGTTTGTCGAACCCCGGCCAAATGTTTTCGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTATCTGATGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAATATTCCTCAGCCGCCTGGTTATGAAATTCGCTACAAGGGGGAGGTCAGAAAGCCGATTATTGAGCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATTCGCGGATATAGTGGTTGAGTTGATGCTCTTTGACAATATGTTGGT # Right flank : CCGCTCAGCTTACCCCGCCAGATGGCACACGGCTTCAATATTGTGCCCGTCTGGCGCAATCACAAAGGCGGCGTAGTACCCGGCGTGGTAGTTGGGCCGTAACCCCGGCGCGCCGTTGTCCTTTCCTCCGGCGGCCAGCGCTGCCTGCCAGAAGGCGTCTACCTGCTCGCGGCTGTCGGCGCGAAAGGCGATATGCAGCGGCGCCGGTTTGTCCGCACTTTGATAGAGACACAAAGAGACATCGCCGCTGCCCGCCAGCTCTGCGCCGTAGGTCGGCTCGCCTTCATCGACCAGCGTTACGCCAAGCGGGGCCAGAGCCTGTAAAAAGAACGCTTTGCTGGCGGCATAGTCGCTGACGCCGAATTTCACATGATCGAACATCTCTTCTCCTGTGGACGGGTATCGCCAGCCGAACGCGTTAGCCGGGAAATAGATGCAAAATAGTTAACAACGGGTAGTAACTTTTTTAACAGCTCAAAATGTTTAATTATTCCTAATAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //