Array 1 218780-220393 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXKW01000002.1 Salmonella enterica strain BCW_1981 NODE_2_length_404098_cov_0.349315, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 218780 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 218841 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 218902 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 218963 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 219024 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 219085 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 219146 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 219207 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 219268 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 219329 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 219390 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 219451 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 219512 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 219573 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 219634 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 219695 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 219756 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 219817 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 219878 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 219939 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 220000 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 220061 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 220122 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 220183 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 220244 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 220305 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 220366 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //