Array 1 336-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGLA01000301.1 Escherichia coli strain sc12-97 NODE_301_length_667_cov_0.916667, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 335 29 100.0 32 ............................. ACAATCCCACGCCGATAATCTCTATACAGCAA 274 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 213 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 152 29 96.6 32 ............T................ GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 91 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 30 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATGATAAGGAAATGTTACATTACGGTTGGTGGGCTGTTTTTATGGGAAAAAATACTTTAAGAACAAATGTATACTTTTAG # Right flank : GC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 520-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGLA01000384.1 Escherichia coli strain sc12-97 NODE_384_length_556_cov_1.68531, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 519 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 458 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 397 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 336 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 275 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 214 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 153 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 92 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 31 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AACCGATTTCATCAAAGCATTAAGGGATGGAATAAA # Right flank : GAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 93867-94749 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGLA01000007.1 Escherichia coli strain sc12-97 NODE_7_length_215222_cov_118.359, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93867 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 93928 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 93989 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 94050 29 100.0 32 ............................. CGTAGCGCCGCAGAGCATTTACGCGAGTTATT 94111 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 94172 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 94233 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 94294 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 94355 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 94416 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 94477 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 94538 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 94599 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 94660 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 94721 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 120452-121639 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGLA01000007.1 Escherichia coli strain sc12-97 NODE_7_length_215222_cov_118.359, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 120452 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 120513 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 120574 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 120635 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 120696 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 120757 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 120818 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 120879 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 120940 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 121001 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 121062 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 121123 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 121184 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 121245 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 121306 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 121367 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 121428 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 121489 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 121550 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 121611 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //