Array 1 292952-293555 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNB010000001.1 Listeria monocytogenes strain 2014L-6505 NODE_1_length_1467558_cov_41.4104_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 292952 29 100.0 34 ............................. GAGGAAGCCGCAGCGATTGCAGCTCATATCGATC 293015 29 100.0 35 ............................. ATTGTATTTCGGTTTCCGTATCCGTTTCCGCCATC 293079 29 100.0 34 ............................. CAAGAAGAACGATATGTTCCTGAAGAGGATTTTG 293142 29 100.0 36 ............................. GTGTAATATAATAAGCGCATAAAGACAAACAACTGC 293207 29 100.0 34 ............................. TAAACTACAGATTCAAAACCATCATTTTCATGTA 293270 29 100.0 36 ............................. CAAGAAGCAGCAGCAATTGCAGCTCATATTGATCCC 293335 29 100.0 34 ............................. GCAATACTGAAAGCTTGGCACGGAAATCCTCCTG 293398 29 100.0 36 ............................. TCGACATAACACATATATTTAAAATCATTAAAACTA 293463 29 96.6 35 ..............T.............. GTTTTAGCCCGTGCTGTAAAAAACTGACTATCAGT 293527 29 75.9 0 A.....A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ==================================== ================== 10 29 97.2 35 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCATAGAAGTTATCGCTTGCGCAACCCACTCTGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGGGATCGACAGAATGTTGTAAGTGGTTGGAGGAAGGGAAGTTTGACGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTCCACCACCATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTTTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCACT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 310382-313060 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNB010000001.1 Listeria monocytogenes strain 2014L-6505 NODE_1_length_1467558_cov_41.4104_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 310382 29 100.0 36 ............................. AAATCAACCGCGCACTCCCATTCTTGTGGTCTAAAA 310447 29 100.0 36 ............................. TTACTTAACAAATAACCGCTTCCTCTTAGCCATTCG 310512 29 100.0 35 ............................. TAGTTCTAAATAACCTTTCTTATTATCATACCATG 310576 29 100.0 36 ............................. CGAGTTTGTGAAATGCTAGGGACAGACACGAAAAAC 310641 29 100.0 35 ............................. GTGTTTGTCGTTGTCAAATCTCTTGTTTCCGCCCC 310705 29 100.0 36 ............................. CACAGTTGGTATGATGCTAATCTGTCTAAAGATTGC 310770 29 100.0 35 ............................. GGAACTAAATTCATTTGATCTTTGATTGCTTCTTT 310834 29 100.0 37 ............................. CTTGTTGATAATGTAAAAATGATACAAGTGTCATGTC 310900 29 100.0 35 ............................. AGGACTACCGATTATCGGTCGGTTGCTTTGCCTAC 310964 29 100.0 36 ............................. AAATTTTCCTCGTCGAATATATCCATCGCCCATATA 311029 29 100.0 37 ............................. CCTGAAACATAACAATACTGATCTAGAATTTTAGAGT 311095 29 100.0 34 ............................. ACTTTTTTCGAATTCTAAAGGTTTACCATGTAAA 311158 29 100.0 36 ............................. ACGTTTCGATTTTTCGTAAAAGTCTTCCTGTTTTTC 311223 29 100.0 35 ............................. TAACATGGAGCCACGGCAAACCTATCACTGCCGAA 311287 29 100.0 37 ............................. ATGAATGGAGAGAAAAAGTAAAAGTTATTTTGAGGAA 311353 29 100.0 35 ............................. TTATTAAACCGCGCGTTTTTTTCCATTCCGTTAAA 311417 29 100.0 34 ............................. AATGTAGCACGAATGATTTTTTTGTATTCTTCAT 311480 29 100.0 36 ............................. CCATTAATGCGTGCAGCATTGTTTAATCCGGAATTG 311545 29 100.0 36 ............................. TCATTTGCAGTCCTGATGAGGATAACGGTATATCAA 311610 29 100.0 36 ............................. GATATTATATTGTGCGAAAATATCGGCAGTTGATTC 311675 29 100.0 35 ............................. AGTAATGAGTAGCGATTAAATTCTAACGCCTATTC 311739 29 100.0 37 ............................. GAACACGCGCCAGAAAAATGGGCCAAATTCATCGAGT 311805 29 100.0 34 ............................. ATGGTTGTTGATGATCTTTGGGACGATGGTTTTA 311868 29 100.0 37 ............................. TCAATCTGCACTTTGCACTTTTGCGTGTCGTTATAAA 311934 29 100.0 35 ............................. TGCACAAAACCTTGATTATAAGTTGAAGATGTTCT 311998 29 100.0 36 ............................. TTTGACTTGAAGAAGTAAAGTACCTCCTGCTTTACT 312063 29 100.0 34 ............................. TACATCGAAATAAAGTTCTTTGCTGTCCGGCTCG 312126 29 100.0 37 ............................. TATGTGATGTTACATATTCTTTTATATGGTTCACGTT 312192 29 100.0 36 ............................. ATGTCTGCGTGCCCCAGTCTCTCTTGGATTACTTTG 312257 29 100.0 35 ............................. ATTGGAAAGTGTTCTAAAAGCACTTGCACAATGTC 312321 29 100.0 36 ............................. CTGATGTAGCTTATTTTTAACTGTTCGGTGAAATAA 312386 29 100.0 37 ............................. AAATACTTGCAAGTTTATCTTGATGCTTCTGACTATC 312452 29 100.0 35 ............................. CTATTGAGTTTTGTATTATTCCAGACTGGAATTCG 312516 29 100.0 34 ............................. ATCGCAATATCATTCCCTAAAATCATTTCTATTG 312579 29 96.6 36 .........................G... TTTGTTAACCCACTAGCTAAACCACCAGCGCCCTTC 312644 29 100.0 37 ............................. TTGATTATCTTGTAGGCCGCACAGACAATCCGCTTAT 312710 29 100.0 36 ............................. ATAAGAACAAACGGAACAAATGATATTTTAACGCTT 312775 29 100.0 35 ............................. CAGTTTACTTCAATGGATGAAGCGCACGAATACAC 312839 29 100.0 34 ............................. TTGGATGAAGATGAAGTGATAAATGATGGAGAAG 312902 29 100.0 34 ............................. ATGTTAAAACTACTGGTAGACCATTGGAGAAACG 312965 29 100.0 37 ............................. ACGCCAGAAGCTGGTGATAGGAGAGCGCGAGATATTC 313031 29 93.1 0 .......................A....C | C [313054] ========== ====== ====== ====== ============================= ===================================== ================== 42 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCACTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGCCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATTCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAATAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCGAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //