Array 1 2420-1791 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNJN010000024.1 Parabacteroides merdae strain D33t1_170424_F9 NODE_79_length_2573_cov_27.8365, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2419 32 100.0 35 ................................ AGAGACACCGACAGACAGGTTCAGCGACCATTGCA 2352 32 100.0 33 ................................ TTTGCGACCGAAGCCCTGACATTGGAGGCAATC 2287 32 100.0 37 ................................ GTCGTACATCTTATGTAAGATTGATTGCAAATATAGA 2218 32 100.0 34 ................................ AACGCCGGCAATACCGGTCTTTTCGACTTTCTGG 2152 32 100.0 33 ................................ CGAGGCTTTGTCGGGGCGTTATATCGGTGCTCG 2087 32 100.0 33 ................................ TCTTGCTGATGACCGTTTAGATCAAATGTTTAA 2022 32 100.0 35 ................................ TCGCGACCGCGAGCGGATGCGAGCCCCATTTAACC 1955 32 100.0 34 ................................ TTGCTGCACAGGCTGCTTCCGGCGGTGCGAACAG 1889 32 100.0 35 ................................ TTCGATTGCAAGCCCGAGCCGGAAGACAATTGCAA 1822 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 10 32 100.0 34 GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Left flank : AGTAATTGTAAAAAACGTTAGATGTTCGCATTCCCTATAAATCATACACTTATAGATTTATTTAGAGAATATGAACATTTATTGCTTTTCTACTTTATCATTCGCAAAATTACAATTTAAAAGTGTCATCAATAAAGCTTTTCACAAACATGG # Right flank : CACTCTTCAAAGGCGCGTTTGAACGTGTCTTTAATGTCGCATCCTTTACGGGGACAACTTTTATAATATTTTTTGCAAGAAGATTACAGGATTAAAATATTTGTTTGTTAGAAAATAAAATATATCTTTGTTGAACAGAGTTATAAAGATACCTTATTACTCAAAGCATAAACACCTTATATTACGTTAACCTAAACATATGATATATACAAATAAAGAATACTGTCTTGAGGTTAAAGGAAGCATGGCCTGCTTTACCCGTCCGGAGATGAAAGTCGAAAGAGTTAGCTACGACATAATAACGCCATCTGCTGCCCGAGCCATTTTCGAATCTATATTTTGGAAACCAGCCATACAATGGAATATTACCCGAATAGAAGTATTAAATCCAATCAGATGGTTTTCCATGAAAAGAAATGAGATTGGAAGTTTAATGAGCCCCCGTTCATCCGGATTATTCATCGAAGATAATCGGCAACAAAAATCCAGTTTGTTACTAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.50,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3964-5054 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNJN010000025.1 Parabacteroides merdae strain D33t1_170424_F9 NODE_80_length_19208_cov_36.9346, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 3964 32 100.0 34 ................................ GTGACAGGGGTACGATCGGTGGCGTTTAACGAAC 4030 32 100.0 35 ................................ CGAAATACATTTTATTTATAAATCTTGGCAGCCCA 4097 32 100.0 32 ................................ ACTGGAACCCGATGCGGTTGTATCCCTGTTTG 4161 32 100.0 35 ................................ CTCGTCACAAAAAACGGAGATACTACCATCAGAAT 4228 32 100.0 33 ................................ CTTAGTGAAATAGAAAGTGATAATCGGAGAGAA 4293 32 100.0 34 ................................ CTCTCGATAATATAAGCGCAACTGACATGTTGAT 4359 32 100.0 35 ................................ TATATATACAATTATATCATTCATCCTCGTTCCAA 4426 32 100.0 37 ................................ CAATCTTTCGAGTCTTGGATGAAGGGGGCGGAACTTG 4495 32 100.0 32 ................................ CGCGGATTTAGTTATAAAGAAATCATCGAAGG 4559 32 100.0 34 ................................ CTTTGTCCTCCGACGGTTTAATGGGTGGCTCTTT 4625 32 100.0 34 ................................ AAAACCAGTATCAATAGAGTAGAAACTGTTGGCG 4691 32 100.0 35 ................................ GGGCTTAATGCGAACAGAGGACTTAGGCGGCACCA 4758 32 100.0 35 ................................ CCATTGGCTATTGCTGATTGTAACAATTCATCTGA 4825 32 100.0 33 ................................ GATCCGATACACATCGTCCGTATCCTGCCAGAT 4890 32 100.0 35 ................................ TGGAGTAAGGGTATCAATGACTATCTGAACGAGAA 4957 32 100.0 34 ................................ CTTTGAAGGGTTGGAAGATAGCAGTAAGCCGTCC 5023 32 90.6 0 ..TA.......................A.... | ========== ====== ====== ====== ================================ ===================================== ================== 17 32 99.4 34 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : TTTAGATAATTATCCGGTCTTTTTAATGAAGTGATTTTATGTATGTTCTAGTTACATATGACGTAGAAACAATGACTTCCGACGGACAGCGCAGGCTACGTCAGGTAGCACGTCAATGCCTGAATTATGGCCAACGCGTCCAGAATTCCGTTTTTGAATGCTCTGTCTCGCCTGCTCAATTTACCGAGTTAAGATTAAAGCTATCGGATATCATAGATCATAAAAAAGATAGTATTCGTTTCTATTTCTTGGGAAATAATTATTCTAAAAGAGTTGAATACATAGGTGTCGTCACATCCTATAATGTAGAAGATGAACTTATAATATAACTGTTTGCGAACATTAAGCATTAACAAAAAGCTGGAGTTTTCGCAATCATTGATTATTAGCCTATTAAACACTCCTATTAGTTTTATTTCATCAATAAAAAATCCAAAAAGTTTATTATCGCATAAATGCATTGATAACAGACTGTAAATGTTTGCATTATTTGTAATGCA # Right flank : CGAGTAAAACATACCTGCAGTCGACACAATTTATTAAATTATCAATTTCATTATTTTACCATGCAAGACTGAACTGCTCCACCCTTCTTCTTTACACGCTTTTGCATAATCGTCACGATGTAACTTATTATCTATCAGAAACAATTTCAAAAAATGAGTCCAAGTAAGCTTTTTCGATAAATCAGACACTATTTCAAGTTCTGGAAAATATACGCAGAACAACTCCATTTGAAGCAAGTGTCTAACTTCAAATTCTTTACCATAACGTTCCACTAATTCACGAGAAAGATATTTAAATGTATCTATCCGATGAAGTGTTGTCTCTTTACTGTAAAGATCTTGTTTAATTAGTCTACCGATTTCCCAATACAATATGTTTTTGTCTGCATTCAATCTTCGGCTACCTTTTCTCTGTGATTTTTCAATTAAGAAAAGAATATCACGAAGTAAATCTTCCCTTCTTTTCATATTCATTTTATTTTTATGTACAAAAATAAACT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //