Array 1 292849-293135 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKL01000001.1 Listeria monocytogenes strain FSL L7-0155 NODE_1_length_1514166_cov_66.224320, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 292849 29 100.0 35 ............................. TTTGAACCATCTATTTTTAAATTTGAAGTGACAGG 292913 29 100.0 37 ............................. AAATGGCATGCGTTAAGACAATCCCATTCTGCATCAT 292979 29 100.0 35 ............................. CCGCAAGTAGAGAAACGTCTTTCGCTTTTTAGCAT 293043 29 100.0 35 ............................. GTTTTAGCCCGTGCTGTAAAAAACTGACTATCAGT 293107 29 75.9 0 A.....A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 95.2 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGGCGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAATGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTCCACCAACATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAACTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTTTTATTTTTCACT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 309916-312219 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKL01000001.1 Listeria monocytogenes strain FSL L7-0155 NODE_1_length_1514166_cov_66.224320, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 309916 29 100.0 36 ............................. AACAGACATGATGGGGAAATCGTTGACAGCGCGCCA 309981 29 100.0 37 ............................. TTAATTTGCGTTTTAAATAACTTGAATGAAACATATT 310047 29 100.0 36 ............................. AAAAACTAAACTCTTCTTTCTTTCCGTTATTGTCTA 310112 29 100.0 36 ............................. ATGATTTATGGATCGTTTATTAAAATGTTAGAAGGT 310177 29 100.0 36 ............................. ATTCCCTCGTGCTCGACATTGATATACTTTTCCTTC 310242 29 100.0 38 ............................. AAATTATGTTATGGATAAGTACGGGTGGGAGCATGAAT 310309 29 100.0 36 ............................. TGTATTCTTATAATGAGCTTTGCAAAATGGTTCCCC 310374 29 100.0 37 ............................. TCACCAATTCATGTCCTACTAGCTTCGGACGTTTCAT 310440 29 100.0 35 ............................. ACGGTTGAATAAAACGAATAATAAACTGCATGTAT 310504 29 100.0 34 ............................. AAGCTAGTCGCGAACAATTAAGCGCGTTAGCCCC 310567 29 100.0 36 ............................. CAACGCTTTTTATTGATATGATACTATATGACATTA 310632 29 100.0 37 ............................. TGCTTCTTGCTGTTCTTTCTCTTTTTTAAGATTTAAT 310698 29 100.0 36 ............................. GTCTTTTAGCCTGCTTTTGGTTAAAGTGGGGTTGTC 310763 29 96.6 36 ..........A.................. CTAATCCCATGATATCTGCTTCGGTCATGTTGACTT 310828 29 100.0 36 ............................. ACCTGAAAGACTCATGTTCTGGCCATCCTGTCCCTC 310893 29 100.0 35 ............................. TCTAGTTGAAATATTGCTACCTAAAGGGACGCGAG 310957 29 100.0 36 ............................. TACTTAGCACCTACAAGACTAGCATCACCCTGCGCA 311022 29 100.0 35 ............................. GCAGCCAAAAACGCGGGCAAGGGCGTAGCTAATAG 311086 29 100.0 37 ............................. ATTGGACCGGAAACTGCAGGCGACTTACTTAATTATC 311152 29 100.0 37 ............................. ACAGTCAAATGATGATGACCAACTTCCTCTGCCAAAG 311218 29 100.0 38 ............................. TACATTAGTGTATCGAAATCCGTATCGAAAATTTCTAC 311285 29 100.0 36 ............................. AAAATTGATCATCAGGTAAACTAGCAACATCAAGTT 311350 29 100.0 36 ............................. GGAAACGCCGTCTTCCGTCGTTCTAAATTTAAAACT 311415 29 100.0 34 ............................. TATAAATTAAGGATAAGGAGTGTTTTTGGATGGC 311478 29 100.0 35 ............................. CTTTCTGGAGCAACTTTTAAAGTGAAAGACAGTGA 311542 29 100.0 36 ............................. TATCTTTATCTGTAGCTAGTTTGAAATCATCTTCAT 311607 29 100.0 34 ............................. TATTCTTTTAAAGTTGGCGGTAGTATGGTAACTA 311670 29 100.0 35 ............................. AAAGTTTCATCTTCGCCGTCTAAATCGTTCCAAAA 311734 29 100.0 37 ............................. ATAAAATTACACATTGGACTCCAAATATTTTCAGATG 311800 29 100.0 36 ............................. ATTTGTTGGGAAAGAATCAACTTCAAGTTTAGATTT 311865 29 100.0 37 ............................. TATGTGATGTTACATATTCTTTTATATGGTTCACGTT 311931 29 100.0 36 ............................. ATGTCTGCGTGCCCCAGTCTCTCTTGGATTACTTTG 311996 29 100.0 36 ............................. TTTTCAATGTGCGAGTATGCTCCTCTGGAAATTCCT 312061 29 100.0 35 ............................. TAACAATGAAAAACGGATTTACAAAATTAGCGTCC 312125 29 100.0 36 ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 312190 29 93.1 0 .......................A....C | C [312213] ========== ====== ====== ====== ============================= ====================================== ================== 36 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCACTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACCAAAATCCCCTTAGAAGAAGTTGCCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAATAATCCCCACACAAGTCCTGCTGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCGACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCAATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //