Array 1 38663-40487 **** Predicted by CRISPRDetect 2.4 *** >NZ_LROS01000002.1 Clostridium ragsdalei P11 CLRAG_contig000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 38663 30 100.0 37 .............................. TATCTAGGATACTGACCTTGCACCAAATCAACCAAAA 38730 30 100.0 36 .............................. AAGCAATAGTAAACAAAACTAAAATACCCCATCTAA 38796 30 100.0 36 .............................. CTCCTAATGGTGATATTGAAGCTGGAGGTGTAATTG 38862 30 100.0 36 .............................. ACAGCATCAATAGTTTTAGCTCCAGTACCTTCAATA 38928 30 100.0 37 .............................. CATTATTTTCAACAGCAAAATCATAAAAATATTTAGG 38995 30 100.0 37 .............................. TTTTAACCGCCTTGTCAATAGCATCTGGAATAGTATA 39062 30 100.0 37 .............................. CGGAGGGTGTTAGTATGATGACTTTGGTTTCTAATGC 39129 30 100.0 37 .............................. TAGCACCAGTAGAAGTTTGTTCAAACGCATATTTGCC 39196 30 100.0 38 .............................. CTAACCCAGTCCTGTACCTTAGACCTAATAGAAGAAGC 39264 30 100.0 37 .............................. TAATAGAAGCTTCACTATCTGCATATCTAAGACCCAA 39331 30 100.0 35 .............................. CTTTATTGTGGGTAAGTAAAAGAAAAAAAATAGCA 39396 30 100.0 37 .............................. TTATTTAATAGCTTTTATCCAACGCATAACAAACTGA 39463 30 100.0 35 .............................. GCATCTGTAGAGCCATCTGTTAAGTTTTGTGCTGT 39528 30 100.0 37 .............................. CCAGATATAGAACCCTCTAAACCACCAAAATCTCCAG 39595 30 100.0 37 .............................. TGATAAAACTTTAAAGTAGTTGTGCTACCTTGTGCAT 39662 30 100.0 36 .............................. ACGCCATACTTCCAAACAATGAAAGCACCTAAAATA 39728 30 100.0 34 .............................. AATAATAAGGAGTGTTTTTATGATATATCTTTAT 39792 30 100.0 36 .............................. ACAAAACATAAGAAAACAAAAACACAACAAGTCCAA 39858 30 100.0 36 .............................. AATCATGGGTAAATCAAGCAGTAGAACAAGAAAAAC 39924 30 100.0 35 .............................. TCATTTGACGTGTCTATAGTTACGGTTCTTTCATC 39989 30 100.0 38 .............................. CGAATAGTAATATAATTTCCTCTATCCAGATGAATTCC 40057 30 100.0 36 .............................. TCAAACTGAGTAACAAAAACAACGGTATAACCTAAA 40123 30 100.0 37 .............................. AATGAATATAGTAGCATTAGTAATGCTAACATTTATA 40190 30 100.0 37 .............................. GGAGAAAAAGACACAGAACTTAGTAAAGATGGTAAAG 40257 30 100.0 37 .............................. CAAATGTACTGTATGTGGTGAAGTAATTTACTTAGAC 40324 30 100.0 36 .............................. ATCGGTGAGCAAGTTTCACTCGAAATTAAAGCAACC 40390 30 96.7 37 .................A............ TTTATTTTATCTTGGACTGCTTGAATTCTATTTTCAA 40457 30 90.0 0 .........A...............A...G | G [40484] ========== ====== ====== ====== ============================== ====================================== ================== 28 30 99.5 36 GTTTTTAGAGTACCTATGAGGAATTGAAAC # Left flank : CACCACCATAAAAACTTTTGACAAGTCTAAAGCTCGGTATTTAGAAAATCTAAGAACCTTAGCTAAACTCGTATCTCAAACATATCTAAGCTCCGAAGATTTTCTAAAATACTTCGCTAAGACTTATAAAAAAGTTTTTAAAGGTGCTTTCAATTTTGTCATTACATTTTATACATAAGTTCAAATTTCAATTGGAAACCCTACATATATTTTAAGTGGATGTAAGACATATGAATGATAAAAAATGATGTTAAATGGAGATGGAAGTTGTTATAATTAATCTAAATATATAAGTTTTGCAGTAAAATTAAAGAAGGCAGCAATTGAGATTTAATAATTGAAACTGATAAGATTTTATGTCGTCGACCCCCAGTAGTGCAAAAAACCCGGGAGGTCGACGCAAATTATTTTTGAGTGAAATCAATGCTTGACAGGAATTGCCCTAATAAGTGGAATATATTGACTTTTTGAAGAATGTAGGTGTATTCTATATTCGATGG # Right flank : GTTAGTGGTAAGTTAAAAGTGATAAGTATAAAATTAAGAGTTGATAGTGAAAAATTAATAGTTGAGGAAAGTATAGAGTTGAAATAACGAAGAATAAACAATAATTGATATTTAGACTTTGAACTTTGTTATTTATTTTTAAATAGTCAAGAATTAGATTTTTAAAGTATCATAATCTATTAGTTACAATGGATTGGGGTACTTTTTATTTTATTTCTGTATGCAATAGAAAAGAACATAAGTTTGTATAGAATTGTAATTCATGGCAAAACTAATACTAAATTTTATATTTTAGTGGAAAGAGATGATTGCTGTGGATTATAATAAAATTGAAGACGCAGTACTTAAAAAAGTACTTGGTATATTTGAGCAGAGCACAGTGAATTTTTTAACATATATACTAAAATAATTGCCCCTGCGGAGACGAAAATAAAGAATATAGAAATAAACTAAAAGAAAATCAGATATGATTATGAGACCATTAGTTAAAAAGTTTAAAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //