Array 1 21801-21584 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYUO01000003.1 Bifidobacterium pseudolongum subsp. globosum strain 2049B Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 21800 27 82.1 38 ...........-.G...GT.......C. GGTCACCACTGCATCAATTGAATTGCCATTGCCACCAG G,G [21777,21792] 21733 28 100.0 33 ............................ CCATTTATAAGCGGCGCAAACCGACGGCTACGA 21672 28 100.0 33 ............................ GGCTTGGCGGCTACCGCATCAACCTTTCTGGCG 21611 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 4 28 95.5 35 GGAGTATCCCTGCCCGCACGGGGCGAAC # Left flank : GTGGTGAACCACATCACCCCATCCGGCATCGTGCGCACACCCCAACCACCATCCCGGTCCATGACGTCAAGCCTGCCCGCCACCATGTTGGCGAAATCCCCTGGCGCCGGGTATGCGTCGCGCACCATCTCCGCCACACACCATTCGACCTCCTCCAACAGTTGTGTTTCGTCCGGATAGCAGTCGAACGAGGAGTCGTCGTGTCTGGTTTCGATCATGTTGATCCCGTCCACATCCCCGTAAGCGTACAGGCATATTGTGTGATCAGGGTGAGTGGTGTGGGGCGTGATAAGCACCCCGTCCGGGGTGGGGTCGACCCGCACCCACGGATTGTCCGTAAGGAACGGCGCGAACGACGCCTGCCCGTTCATCAGCCGCCACAGATCCTGTACGGTGAAGTGTTCATATTCCATCATGCACCCCTTATCAGGCTTGCCGCATCCATACTGGGCCTCATGCGTCCCCCTGGGAGAAAGATGGATATGGAACCATGCCATGAT # Right flank : ACTGCCCAGAACGTTGAGAATCCAGGATTCAGGTCAGTCCAAGTAGCGGAAACGCTTCGATTCGTCCCATGAGCATGTGGACATGACCGTCTTGCGACGGTCAGCTTCAAGTCTTACGCCGCCATGATCGGCGGCGGCTTGATAAGCGCTTCGCCAAACCCATCCAACGACCCTAAGGTGGTTGGCATTGGGTTCTCCACGCCCGTTGTCCGTATCCCCACACCAAGAGTGTGGTTCGTTTCCTGCACAAGCCTCTTATGCAGCTGTCTATGGCTATGCGTCCGGCGACGGTCCATTGGCAAGACGTTGCGCCAACGCCATGGCGTCCACATGCTGTTCAACCGTCATTGGTTCGTGCATGTGCACGCTGGCGCCGGTACGTGCTGTTTTGTACGCCAGTTGGCGGGTGAACTCGGCGAACGCGGCGTCCGCCAACGGTTGGGCGAGCACATGGTGTCGCATGCCGCGTGCCAGATGGATGCGTTGCACATGGATCACGC # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAGTATCCCTGCCCGCACGGGGCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 2 22781-23112 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYUO01000003.1 Bifidobacterium pseudolongum subsp. globosum strain 2049B Contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22781 28 100.0 33 ............................ CCGAAAGGAACCCTCATGCGTACTCGCACCAGA 22842 28 100.0 33 ............................ GCGGCGCAAGCCCACGGCGACGATTCCCGCGCA 22903 28 100.0 33 ............................ CATGCAAGGAGCACGAACATGTACGAATCACTG 22964 28 100.0 33 ............................ CCCGTTTCAGCTGCTGGACGAGGGCATGCTCGG 23025 28 100.0 32 ............................ CGAGCGCGAATAGCGGCGGCCCTTGCCCAGAT 23085 28 89.3 0 A....T...A.................. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.2 33 GGATGCCCCGTACAGGCGAGGACACTCC # Left flank : GGGGTGATGTGGTTCACCACCAGCCAGGGCCAATCGTGGCGTGTGGCCATTGACGATGACATGCAGGTGGGCGATTGTGATTTCGAGTTGGCGGACTGCCGCCAACTATGGGTGGGCATCACCCCGGAAAATGCGGACGGGGAACCGGATTGGCAAGGGTATGACACCGCTGGGCAGGCCGTGCACGATGTCGCGGCTTGGCTTATACAGGACCGTTGCCGGACGCATAGTCAAGGATGACTGCATAAGAGGCTTGTGCAGGATACGAACCGCACTCTTGGTGTGGGGGATACGGACAACGGGCGTGGAGAACCACATTCCGACCATCTTCGGATCGTCGGATGGGTTCGATGAAACGCCTATCAAGCAGCCACCGGACTGGTGGTGTGAGGCTTGAAGCTGACCGTCGCAAGGCGGTCATATCCACGCTTGTGGGGCAAACCGAAGTTTTCGGATTCCCTAATGTTGCCGAACCCTGGTTTTGCAACGGTTTGGATAGG # Right flank : CTCCTCGACCGCTCAACCCCACTGCTGATTGGCCCTTTCCGGTCGCATAGAGGGTGGGTGAACGCACACCATATGTCAGGAAGGACGATGATCATGGCGCAGCCACGCAAACCCAAAGGGTCGCCCAATGGCACGGGAGGCCAATTCGACCATATGAACCACACGGACATGGGCCTGCCCGCGTTGGACGTGTCCACCCAACCCGTGGGCGGACAGTTCATCGACAAGACCGCCGAGATCGCGGAAAAACTGTTCGACCGCAAGCAGGACTGGGACGATCTGCCCATTGGCGGGTGTTACCGGATCAACGATTTCGGCGATTACGTCACCGAGGACGATTGGCGGGACGTGTGGGACGAGCACCCGTTGGAGGAGAAAGCATGGATGCTCGCCGACAACGGGCAGTACACCACGGACGAGGTCGCCCACATGAGCCCCGCTGAGATCGAACACGCCTATGATGCGGGTGGTTTCTACCCCGCGTACGTGTTTTACACCGA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATGCCCCGTACAGGCGAGGACACTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 39080-38209 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYUO01000004.1 Bifidobacterium pseudolongum subsp. globosum strain 2049B Contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 39079 36 100.0 29 .................................... CGATGATGTCGGACATGAGGATGCCTTTT 39014 36 100.0 29 .................................... ACCTATTGAGTTCCGCAATACGCGCGTCA 38949 36 100.0 28 .................................... CTGATCGCACTGGTGGACACACCGAGCT 38885 36 100.0 28 .................................... AGTTCGCCGCGCGTGTCGCATTAGATAC 38821 36 100.0 28 .................................... ATGAGGGTGATGAGTAGTTGTTTGTTGG 38757 36 100.0 28 .................................... TAGTGACCACTGGAATTGCAGCCACGGT 38693 36 100.0 28 .................................... TGGCCTTTGTGAGAGCTTCATTTACGGC 38629 36 100.0 28 .................................... CGCGCGTACATCTTAGTAATTTCCACCG 38565 36 100.0 28 .................................... TCGTTACGCATGGCAGGTCACGTGATTC 38501 36 100.0 29 .................................... TGGTCAGCAACACAATCAATGACGCTGCG 38436 36 100.0 28 .................................... TGATGGTTGATGGCACGCCCGTACGCCC 38372 36 100.0 28 .................................... GATAGTTCACCGACCATGATACCGTTTT 38308 36 100.0 28 .................................... CGGATCGTCACCGTGCGTTTCACGCCGG 38244 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 14 36 100.0 28 CAAGTCTATCAAGAAGGTAGGAAGCTAATTCTCAGC # Left flank : TTCCATGATACGGGGATTGACAATACCCTCGTCGATTATGGATTTTGCGCAATGCTTCGCTATCTACTGTGAATCAAAAGAACGCCAATTAGATGTTCCGGTATTTGGAGAAGAATATGAAAAAGGATGAGGAGAGTGGGGGAATGTGGTGCCTTGTGATGTTCGATTTGCCAGTAGGGACTAAATCCGAGAGAAGGGAGGCGACACAATTCAGAAATCTGCTGTTGGATATGGGATATATGATGGTGCAATTCTCAATATACGTACGGTATACTCCAACGCAATCTGGTAATCGTTCAACGGTGAGAATGATTAAAGAGCATTTGCCTGCTGGCGGGAAAGTGCGTGTATTGCATATCAGTGATCGACAGTGGGCTAATTCGCTGAGATTTTATAATCAGCATGTCGAAACGAAGAATGAAACACCAGAAGTGTGCACGCTTTTCTGAAGATCTTTTCCTGTAGGGAATGTTGGAAAATCTACCTTCTTGATAGGCTAT # Right flank : TTTATTGAGGTATGTTCCGGCGATAATCCGTATACACTTGTTTTCCGTTCGCATGTCGCACAGTCACGCACATGCGAAACGGAATTGCCGGTATGATTACCGGGAAACACATAAGAGAGAAAAAGAGGGAAAGACCATGTTCTTTGTTTGGTTGGGAATACTCGCGTTCAGCATCTGTGTGCTCGTTGGTGAGTACCTGCTGATACGTATCGCAGTCCGTGACGGCATCGACTCGTCCTCGACCGCCGATTGGCGGGAAATGTATGTGCTGGAACAAGAATGATCCAAAGATTCCTTGCCTTCCTTGAAGAGCCTGTACAAGGACGCCGGTGAATCGTCCGTTGTGCAGTCACTACCTGCGGAACGTCGTCGCGCCGAGATCGAACGCATTGTCTCGCGTCGTGCTCGTAAGATAGTGCGTGAAAAAAAGAGCAAGCGGTTTACGCTCACCATCGTCGGCATCATTGCCGGCGCGGTAATATCCGCGCTCATGATTTTCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTCTATCAAGAAGGTAGGAAGCTAATTCTCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //