Array 1 855556-855389 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZJP01000001.1 Bifidobacterium callitrichos strain RST27 NODE_1_length_1060977_cov_88.996864, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 855555 33 100.0 35 ................................. GCCTCGGCTCAGGTAACCCGCAACACCAAGGGAGG 855487 33 100.0 33 ................................. TTGACGATGTATGGGTTGATGTCGCCCCGGTGG 855421 33 78.8 0 ......................G.AT.GA..TA | ========== ====== ====== ====== ================================= =================================== ================== 3 33 92.9 34 GTCACTCCCCGCAAGGGGAGTGTGGATTGAAAT # Left flank : GCATGAGCACGTTGCCGCGCATGGCGAAGTACACGCGGTAGCCGGCTCCGGTGTGGAGTCGCATTTCGCTGACCGGGCCGCCGACTGGCTTGATGTCGCCGAGCGGTCGTCCGGCGAGCCTGCAGGCGTCGAGGCGGGTCAGGATGGCGGCTTTGGCCTGACGGTCCTTGAGTTTGCGGAACCATTTGGCGTATTCGGCGGACTGTTTGATCTCCATGACCATTATTGTATCCTATAGAATACGCTTGGTCAAGCGCCGCGTCTGCCCATCGCCATCGCCAGCACCTCCCGGACGTTGAACTCCCAATAGCCGTCCGAATTCGGGATCGGCTTGGATGAGGGGAGCTTGCCGCGGCGCAGCCAGTCGGTGACCTGTTTGCGGCTGATTTCGTATCCGTATTCGTCTTGGAGCCATTCGGATAGTCCTGCGGGTGTTCTGGTGAGGTGGTATTTGTCGATGTTGTTTCGGGCTTGTTCGCGGATGTCGTCGGTGCGGACGA # Right flank : TCGCGATCCCCCAGGAGGGGCAGACCCTTGACGGGGTGCCGGCCGTCAGACCGCCAACGTCAGTTCGCCCCGCACACGCGGGGATGATCCGGCCGGGAGGCCTACTCGAACCCGACGTGATCGGTTCGCCCCGCGCGCGGAGGGATGATCCGGCTGTATTGCTTCAATGTTTGTTCGGCGGGTTGAGCGGTGTTTTTCCGCAGTGAGAGGACACCAACTTGCCAAACACAATCCGGCCCCTATCTCAGGGACTGTGCTGAACGGTGAGCTCGCCCCGCACGCGTGGGGATGATCCGATTGTCGGCAGAGTCGTGTCATATCGACGCCTGTGTGGGATTCAGCGCGGTTGTGGCCGATTTCGTTGCTGAGTCCCGCGGATTCGGGGGACTCAGAGGAGTTTATTGCGATTATCGCGCTGAGTCCCTCGACGGCACCCATTCATGCCGATATCGGATCGGAGGCGTTCCGTCGGGGTTGCTTGAGAATGGCGGAATTTCAAT # Questionable array : NO Score: 8.01 # Score Detail : 1:0, 2:3, 3:3, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGCAAGGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.90,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 859522-856663 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZJP01000001.1 Bifidobacterium callitrichos strain RST27 NODE_1_length_1060977_cov_88.996864, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 859521 33 100.0 35 ................................. ATGTCCAACGCCGGCGGCCTCACCGGAGCCTCCAC 859453 33 100.0 34 ................................. AGATTGTCCAACATCGCGTAGTTTCCGCGTGCCG 859386 33 100.0 34 ................................. CTGTGAGATGCAGAAAGGATAGACCTCTCACAGG 859319 33 100.0 35 ................................. GAGAATGATCGAACACATCGCGCCGCTCTCATCCC 859251 33 100.0 33 ................................. ATGTACGCGGCCATGGATTCCTCCTCCTCGGCC 859185 33 100.0 35 ................................. GTGATGACGGTGATGACGGTTCCTATGGCGGCGAC 859117 33 100.0 35 ................................. ATCTTGCCGTTGAGCCCGTTGATGACGCCGTCGAG 859049 33 100.0 34 ................................. TGGTTTCGCCCCATGTGGGGACGATCTTGCAGTC 858982 33 100.0 34 ................................. AGGTCGGCGGGGCTTATGGGCGCGGTGACGGTCT 858915 33 100.0 36 ................................. GGTGGCGAGGTGGTGTCGTGCGAGGTGCTGCCGCCC 858846 33 100.0 35 ................................. TCGCCCAAGGCCTCGTATGCGCAGAACATGTCGTG 858778 33 100.0 35 ................................. GCGTTCGGGTTCGTCAGCGCCCACAGGCGACCGAA 858710 33 100.0 34 ................................. TGGGTCTGCGACCGTCAGCGCGGCGATTATATAC 858643 33 100.0 35 ................................. GTGAGCGCCCTGACGAACGGCACCATATGGCACGC 858575 33 100.0 35 ................................. TCGTCATCAAAGACGGGAATGGCAACACGATAGGA 858507 33 100.0 35 ................................. AGATTGCTACTGTCGGTGTAGAAACGGGCCTTGTA 858439 33 100.0 35 ................................. ATGATGTGGTTTGCAGTGCATTCGGTTAGGTGGAC 858371 33 100.0 33 ................................. GAGGACCTCGGTCAGATAGTCTCAGTCGAAGCA 858305 33 100.0 34 ................................. TGGCTCCGGGCCGCGCAGGCGGCGATCCGACGCG 858238 33 100.0 36 ................................. ATCCTGTTCAACCATGGGCTCCCGTTGGGACCGGAG 858169 33 100.0 33 ................................. ATGACGGCCGTGAAATTGATGATGGCGACGCAG 858103 33 100.0 35 ................................. CAGGACATGCTCAGGGACGGCACCCTCACCCACCT 858035 33 100.0 34 ................................. GACGTCGGATGGCTCGTCATCCACCGGTGCGCCC 857968 33 100.0 34 ................................. CAAACCGATGACGGGCGTCGCGTCACCTGTCTGG 857901 33 100.0 35 ................................. AATATCCACCTGAACGACCTGTGGGACGACTATCA 857833 33 100.0 33 ................................. TTGTTGGCCATGTTGTTCGAGGTCCACACGTCC 857767 33 100.0 34 ................................. CCTCGTCAAATCATATTTGTCGCCCATCGGCACG 857700 33 100.0 34 ................................. ACAAGATGCTTGGATTGCTCGTAACGGAGCCATG 857633 33 100.0 34 ................................. ACGATCGCCCTGCCCACGGTGCGCCACGCGCGCC 857566 33 100.0 35 ................................. TCAACCGGTATCCACTCGGACGATGAGGATGACGA 857498 33 100.0 30 ................................. CTTGGTTTAAACCAAAACCAAAACCAAATA 857435 33 100.0 34 ................................. ATCCTCGGAATCGGATTGGAGCGGGCATTCGGCT 857368 33 100.0 39 ................................. TTGTCCTTCATCGGGTTGACGTTTATCGAATTGCGAGTG 857296 33 100.0 33 ................................. CGCCCTGCTCGGAGATACTGCCGTTACCGGGCA 857230 33 100.0 34 ................................. ATCTGGCCGGACGCGACCAGCGCGTCGATCAGCT 857163 33 100.0 35 ................................. ACTGCGGAAGGCGAACCCGCATGGGAACGCATGCC 857095 33 100.0 33 ................................. CTTTTTGATGGTTTCAAGCGGATGTGCGCCCAT 857029 33 100.0 35 ................................. TTTTTCAGCCATGTGAAGCCGTGGGAGAGTTTCAC 856961 33 100.0 33 ................................. TCGAGATACTCCTCGAACTCATCCGCGACCGGC 856895 33 100.0 33 ................................. TTGAGTTGGTCTAGGTCGTCGTCGGAGTATCCG 856829 33 100.0 34 ................................. TTGATCAGCACGGGCCACGGGCTATCGATGTTGT 856762 33 100.0 34 ................................. ATCCGCCTCACGTGCCTCATCCTCGCCGACCTCG 856695 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ======================================= ================== 43 33 100.0 34 GTCACTCCCCGCAAGGGGAGTGTGGATTGAAAT # Left flank : CATGTTGCGAAGGAATGCATGAAATATGGTCAGAGAATCCAGAACAGTGTTTTCGAATGTTCCGTCACTCCTTCGGATTATCTGTTGTTGAAGCATGCGTTGCAGGAAATCATGAATGAGGAGAAAGACAGTCTCCGCTTCTATAATCTTGGAACGAGATATTCGACTAAGGTAGAGCATATGGGCCGTCAAGGTCATATTCCCTTCGACGATGTAATGATGATCTGAGATGGAGTGATGTTGATCGGGGTAATGCCCCGTATGGTGACGCACGAGGACGATGCAAACCAAGTGCGATGTGGTAGCTCTCAGATTATGATCGGTCCTTCGCACCACATCGTGTGATGTTTGCGAGCGTTTTTGTTTTATCTTGTGCTGTTTGACAACTTAAGAGAGTTGATTTCCTGTCTTAAAGCGGTGATTGGCGAGGAACTGAGGTATTGTGAGCATGAGGATGGACTTGTCTGTCCACATTGTGAAAGATGCTGTCCATCTCCGCG # Right flank : GTTTGCATTGGGTGAAGAATTGTTTTCGGGCTTTGTTGAATGCTCGTGTGTTTTGTCGGTTTCGGGGGTGTGTCGGCATGCTTTGTTATCCCCCTCGTTGTTGTGGTGTATGCGTGTGTATGCGTGTATATGAGTTGAGGCCATCCGGTTCGTTCCGTGATGGCCTCGATATAGTGATCTCGGTATGAGAGTATACCACGGGGTGGCGGCAGCCTACTGCTGCTTGGGTTGCGCGTGTCAGGCAGGTTGGATGCTGATGCGGCCGCCGAGTGCGTGGATGACCTTGAGGATGGTCTGGAAGCTGGGGTTGCCGTCCTTGCTCAGGCTTTTGTAGAGGCTTTCGCGGCCGACTCCGGCCTCCTTGGCGATCTGGGTCATGCCTCGGGCTTTGGCGACGTTGCCGAGGGCGACCTGCATGAGTGCGGGGTCGTCGTATTCGGCGGCGGCGTTGAGATAGGCGATGATGTCATCCTCGCTGTCGAGGTATTCGCTGGTGTCAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGCAAGGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //