Array 1 841901-840809 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068213.1 Streptococcus constellatus strain FDAARGOS_1156 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 841900 36 100.0 30 .................................... AAATGTAATATCGCTACTACAAATGACTGT 841834 36 100.0 30 .................................... CTTTGATTACATTTTGAAGGCGCAAAATAA 841768 36 100.0 30 .................................... TGCTCTATATCTTGAGCAAGCCGGATGACT 841702 36 100.0 30 .................................... TTCATGTTGATAATTACTTCGACGATGTTT 841636 36 100.0 30 .................................... TAAAACGAAACCATGCAAATATCCTTATTC 841570 36 100.0 30 .................................... AGCAAGTCTTGCCAACCATTGGCTACCCTA 841504 36 100.0 30 .................................... GGTTGGATGTGGACTTGGTCAATGGACTGG 841438 36 100.0 30 .................................... AACATTGCAAGAAATCTTAAAAGAGATGAC 841372 36 100.0 30 .................................... TGGTGATGGCTCTGGAGCTAAGTCACGCTT 841306 36 100.0 30 .................................... TTCAGTAAATGAAGATTCTATAAAATCTTC 841240 36 100.0 30 .................................... CTTACGTAGACGGTATTTCTTCGCATTTAT 841174 36 100.0 30 .................................... AAAGCTCCAGCAATGATTGTCTTTCACGCT 841108 36 100.0 30 .................................... ATTTATCGTTATCGGTATGATAGCAGGCTA 841042 36 100.0 30 .................................... CGTCCTGTGCAACTCTATGCTCTTAACTGA 840976 36 100.0 30 .................................... TGGTGGTAAAGGAAAATCTTCATCTTTTCG 840910 36 100.0 30 .................................... ATGAAACATCACTAGCATCTGGCGGTACAA 840844 36 97.2 0 ..........................C......... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACAGTTGAATGAAAAGCCTGAAGTGAAATCTATGTTAGAAAAATTAGTTGCAACTATTACAGAACTAATTGCTTTTGAATGTTTAGAAAACGAGCTGGATTTAGAGTATGATGAAATAACAATTTTGGAATTGATTGATGCTTTAGGTGTAAAAATTGAAACACTGAGTGATACTGTTTTTGAGAAAAGTTTAGAGGTTGTTCAGGTGTTTAAATATCTTTCTAAAAAGAAACTGCTTGTCTTTGTGAATGTGTCATGTTATCTGTCTGAACATAAACTAGCTAAATTGGTGGAATATATTCAACTTCATAATATAAATGTACTGTTTGTTGAACCAAGAAAAGTATACGACTTCCCTCAATATGTAGTGGATGAGGACTATTTCTTATCTTGTGAGAATATGGTATAATATTAACAAATATAAGGAATCGTTCGAGCTGAAGTCTAGCTGGGACGAATGGCGCGATTATGAAATTTCGAGACAAAAATTGGTCCACGAG # Right flank : TAACCTATTCTTTTCTTCCAAATTCCCAAAATTCCCAAAAATTCAGACACAAACCATCTGATTGTAAAGCTTGCAAATTTTTTTAATCGTGCTATAATATTTCTTAGAGACATACCGCTGGTTGGAATTTTTTAGAGAGCGCGTGGGGCTGGAAAGCGTGTAGAGGAAGGCAGTTGGGACTACTCTAAAGTAACTTTTATGCAAACATAAAACGGTGGCTACGTTAGAGCCAATCAGAGGTGTCAACAGTTTTTGTTGTACATAAATGAAGGTGGAACCACGTTGCGACGTCCTTTTATGGATGCCGCTTTTTATTTTGTCAGAAGGAGGAAGAATGATGCTTTATATGATTGGCGGATCGCCTTGCAGCGGGAAGTCAACAATTGCTTCACTTCTTGCTAGACAGTATCAGCTGCTTCATATCAAGCTGGATAATTTGGTGGACGAGATGATGAGTCAAGCAAGTGTAGATTCACAGCCGATTTGCCTTCTTAGACAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1868382-1869668 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068213.1 Streptococcus constellatus strain FDAARGOS_1156 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1868382 32 100.0 34 ................................ AGGAACGGCCACTCGACGTTGGCCCATTTTGACT 1868448 32 100.0 35 ................................ GTTGCATAAAAGCTGTTATTACCTGTCAAATCCAG 1868515 32 100.0 34 ................................ ATGGACGAAAATGGCGACAAGTTACTAGCTAAGA 1868581 32 100.0 33 ................................ TCTAGCAAATATAGCCCATGGCAGTCTGACTTT 1868646 32 100.0 33 ................................ CAAAATGCTTGTGAGTGCACCTTGCATCAATTT 1868711 32 100.0 34 ................................ ATCGATAAAACGTTTTTGCCAATCTTCCATTTTT 1868777 32 100.0 34 ................................ ACTCATGGATTGGGATAGCGACAACGTGATTACA 1868843 32 100.0 33 ................................ TACAAACAAAAATTAAAGAAAACAGTCTACACA 1868908 32 100.0 34 ................................ AGACAAGAGGAGCCTTAAACAATGCGCATGATGT 1868974 32 100.0 34 ................................ ATAAAGCTAGTGTGTACGATGTGATTGAGTTATT 1869040 32 100.0 34 ................................ TTCGACATTTAATCACTCCCCGTAAATAGCAACA 1869106 32 100.0 34 ................................ AGACCTGTATAGCTCGTTTGAAATGATGTATTTC 1869172 32 100.0 34 ................................ TATTTCCAAACTCTGTTATTTTACTAAAAAATGT 1869238 32 96.9 34 ........T....................... AATAAAAGTTTTGGAAAAACTATCTTTAAATTTA 1869304 32 100.0 34 ................................ ATCTTGATTGGATATTAAATTTAAAGACCGATTT 1869370 32 100.0 36 ................................ ATTAAAAATATCTATTTTTTGTAACGTTGGATTTTT 1869438 32 100.0 35 ................................ AAAATTTGCGAAAATGCTTGCCTTTATCGGCGAAG 1869505 32 100.0 35 ................................ TGAAATAATAAAATAAATATCTTGTTTTTTCAAAG 1869572 32 100.0 33 ................................ CGGATCGCCTAGCTCATAAACTCCCGCTGCTGA 1869637 32 87.5 0 ......................AA...A.T.. | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 99.2 34 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : CAAAGCAATTCGTGGAGAATTAGAATCCTATCCGCCATTTTTAATCTAGGAGTAAATTTATGATGGTTTTAGTAACTTATGATGTCAATACGGAAACTTCCGCAGGCAGGAAACGTCTGAGGCATGTCGCAAAACTTTGTGTTGATTATGGTCAGCGTGTGCAAAATTCCGTTTTTGAATGCTCAGTAACTCCGGCTGAATTTGTAGAAATAAAAAATAAACTGTTGACAATCATTGACCAAGAATCAGATAGTATACGATTTTACTTGCTTGGTAAAAATTGGCAAAATCGTGTAGAAACCCTTGGTCGAAATGACAGTTATGACCCTGATGTCGGGATATTACTTTTATAAAAACTTGTGTGCGAACCTAGGTTGCACATCAAAACCTAGGACATTCGCGCATAAAAACAGAATGATAGTGGCAAAAATCCAGTTTTTATTAAATGAAATAGCTCAATAGATTCTTAGATATAGTCACAAACGGTGCAACCATGCGCT # Right flank : TACACCTAAACTCTTGTTTGCTTTCAAAAACATGCTAAATTTTTCCGAGATATCTTGGCTTTGGATGATGCCAAAATTTTGCAGAAATGTCTCGAGTTTTTGACTGCATTTTGCGAAACTCTCTTACTTGATGGAGAAAATGACCTGTCTAGTGAGGAACTGTACCAAAAATTAGGTTTGGATAAATAGCGGAGTAAACTAACATCTGAGGACAGAAAGGTTCCAACTATACATATCTGAAGTAGAGTACCTGAAATAATAAAGTTCCCTATATTTCCAACAAATAAGTCAACATTACTTCAACAAAAAAACAGCTCAATAGTAAAGCTGTTTTTTTTACCTATTTGAAAGTTTAAAATTGTGATTGGTCTTGTATTTACGGATGATTAGACGTTTAAACTTCAACATTATAAAGATCTGTTGATAAATAGCGTTCGCCATTATCTGGAGCAAGAGCTAGAATTTTTTTACCTGTTCCTAGTTTTTTGGCTACTTCAAGT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //