Array 1 44118-42630 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYRL01000003.1 Streptococcus agalactiae strain GCH59 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 44117 36 100.0 30 .................................... ATGCGGTCACTCATATAAGACATCTCCTTT 44051 36 100.0 30 .................................... AATTATCAATGTTTACAACTGTTTTAGTTT 43985 36 100.0 30 .................................... TAAAATCCTGAAACAGAATGGGATTGATAT 43919 36 100.0 30 .................................... AAAATCAGAACGCCTTATTTGAAGCAGTTA 43853 36 100.0 30 .................................... CCGTTCAATCTGTTCTTGCTTTTGGTCATC 43787 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 43721 36 100.0 30 .................................... TCTATTAACAATAGTTTTATCCAATTGTTT 43655 36 100.0 30 .................................... TGAAAACAAGCGCAAAGCTGTCAGAAAACA 43589 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 43523 36 100.0 30 .................................... GTTTAATTTTGAATAATATCATGTTTACTC 43457 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 43391 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 43325 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 43259 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 43193 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 43127 36 100.0 30 .................................... CCGATTATTTCCTACATAATACGCACGTTT 43061 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 42995 36 100.0 31 .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 42928 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 42862 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 42797 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 42731 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 42665 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 23 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //