Array 1 14785-17156 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRSA01000018.1 Thiococcus pfennigii strain DSM 228 scaffold0018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 14785 28 100.0 32 ............................ TGCGCCCCTCCCTCGTCTGCGACCTCGCCTAC 14845 28 100.0 32 ............................ TGACGCGTGAGCCGCAGGACGAGAACGTCACG 14905 28 100.0 32 ............................ CCCGGCCTCACCTGCACCTACTGACGGAGACC 14965 28 100.0 32 ............................ GAGCAGAACCGCCACATCGCCGAGACGAAGGC 15025 28 100.0 32 ............................ TTGGCATCGCGCACCGGCCCCGAGGGGAAGCG 15085 28 100.0 32 ............................ AGCCAGTCCCCGGCGTCCAGGACGGCGATCAC 15145 28 100.0 32 ............................ GGCCCAGGCCGGCATGCCTCGCACGCGGTAGC 15205 28 100.0 32 ............................ ATCGTCCCCCGGGTTGACCAGCGCCACCGTGA 15265 28 100.0 33 ............................ ATCCTCGAAGACCTGATCGCCAAGTCCGTCCAG 15326 28 100.0 32 ............................ TTGACCGCCAGCGTCACCGGCTCGGCGAGACC 15386 28 100.0 32 ............................ AGGTACTGCCCGTCTGGGCTGAAGGCCACGGC 15446 28 100.0 32 ............................ GTCGTCGAGGAGGCGATCAAGCGCAGCCCATC 15506 28 100.0 32 ............................ TGACGCTCAGCGACTGCCGCCCGCGCCTGGAC 15566 28 100.0 32 ............................ AGCAGGATCACCCAGGCCGTCTCGGCATAGAG 15626 28 100.0 32 ............................ AGGCGCAGAGCGCCCAGGACGCCGCCGAGGCG 15686 28 100.0 32 ............................ CCCTATGTCGCCGTCAGCGGCGGCAAGGACTC 15746 28 100.0 32 ............................ CACCGATCTGCCGCGCTTCCCGGTGCTGGAGT 15806 28 100.0 33 ............................ TGGAGCAGCGACACCGCCCGGTCGATGATCTTC 15867 28 100.0 32 ............................ GGCACCCCGACGCTGCCGAGCACCGGCTACGC 15927 28 100.0 32 ............................ TTCGCCGCGGCGACCGGCGTCGTCACGCTGAG 15987 28 100.0 32 ............................ CTGCAGGTCAGCCGCGCCGTCTGGGTGCCCGA 16047 28 100.0 32 ............................ TCGATGCGCGCGCCGACGCTGTTGCCGTCGTC 16107 28 100.0 32 ............................ TGCCGGCGCTGCCCGAGCGCTGGCACGACGAG 16167 28 100.0 32 ............................ TCGTCACCGATGCGCAGATCAGCGGCTGGATC 16227 28 100.0 32 ............................ TACCCGGGCCAGCGCTGAGCGCTGCCAGCGCT 16287 28 100.0 32 ............................ CGGCCATAGGTCCGGTCAAGGCGGCTGACGTC 16347 28 100.0 32 ............................ AACCCGCCCGCGAGCACGTCGGCCAGGTTCGT 16407 28 100.0 33 ............................ CTGCCGCGCAGCCTCATCGAGGCCTGCATGGCG 16468 28 100.0 32 ............................ ATGCCGAGCCGCTCGGCGATCTCGTGCACCGT 16528 28 100.0 32 ............................ TCGTGCAATGCGCCGCGTACATGGCGCTAACC 16588 28 100.0 32 ............................ TTCGAGCGTGCCGATCTCGCCGGCCGCGCCCG 16648 28 100.0 32 ............................ TGCCCCTCCTGGAGCCGGTCGAGCGCGCGGTC 16708 28 100.0 32 ............................ AGGGGGTGCGCAGGCCGCGGGCGCGGGTGAGT 16768 28 100.0 32 ............................ ACCCTGGCCGATGCGATCGCCGACGTGGTGGA 16828 28 100.0 33 ............................ CCGCGAAATCACCGACCCCGACGAAGACGGCAA 16889 28 100.0 32 ............................ TCGCCCAGCCGCTCACCGTGCGCCACACCGTC 16949 28 100.0 32 ............................ TCCTTCATCGATTGGCGCCAGTTGCCGGCCAT 17009 28 100.0 32 ............................ ATGATCTGATTGCCCACGCCCCCGCCCCAGAG 17069 28 100.0 32 ............................ CTTGCGGGCGGCGATGCGCTAACGGTGCACGA 17129 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 40 28 100.0 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : AGGCCAAGAGCAACCCGGAGCGACTGCGCCGGCGGCTGATGCGGCGCCATGGGTTGAGTCGCGAGGCTGCACTTGTCCGTCAGCCGACGCGCGAAGGCGAGCGCTTGGTGTTGCCTTGGCTCGAGGTCCGCAGTACCAGCACCGGTCAGCGCTTCCGGCTGTTCGTTGACCAACAGGTGCATCCGGGCCCGCCCACCGCCGGCGTCTTTAGCCCCTACGGACTCAGCGCGACGGCGTCTCTGCCCTGGTTCTGAAAGGGCCGACACCGGAGTCGCAGGTGCCGGCCATCGGCCGGAGTGGTTCGACGCAACGTCCCGTTCGGGCCGCAGAGGGTTGGCAGCGGAAGCCGGCCAGTCCGGTGGGAGTCGCCAACCCTTTTTTTGGCACTGAGGGAGCGGTTCTAAAAATCAGATACTTGCGTCTTCCTGATGAATTTGGATCGAAACCGGAATCTTCCAGAAAGATCTTTAACAATAATGGCTTGAGGGGATTTTGGTCTT # Right flank : AATGTAGCTGATCGTCAGCGTCCCCGGGGCTGGGTTCACTGCAGGGCAAACGCATCAAGCTTCCCTAATATTCTAAAGGTGTAATAACCTGTGTTGTTTTGATCGCCTGGAGCCTTGAAGCGCTCTATCATACACGTTTCGCGTTTCGGCGAGGCCTCCGGTTAGTAGCAAGAAGCCTCAGGGCAAATCCCCTCGTACGAACAATGCGGGACGAACGATCAAATTTGCACTCAGCAGGGCCTCCGGCAATCGCATGAATTGCAGCTATCGGCGCCATCTATATTAGGATGCGTTGATGCGTTTGCCCTGGGGTTCACTGCCGCATAGGCAGCTCAGAAAAGGCGCGGCGCGTGCGCGCGGCGGTGCCGATGGTTCACTGCCGCATAGGCAGCTCAGAAATCGCCGGTGACCGACTCCGGGTCGTAGCTGACGTTCACTGCCGCATAGGCAGCTCAGAAAACGGGTAGCCGCGCGCATCGTGCACGACCAGCGTTCACTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 17467-18078 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRSA01000018.1 Thiococcus pfennigii strain DSM 228 scaffold0018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================ ================== 17467 28 100.0 32 ............................ AGGCGCGGCGCGTGCGCGCGGCGGTGCCGATG 17527 28 100.0 32 ............................ TCGCCGGTGACCGACTCCGGGTCGTAGCTGAC 17587 28 100.0 32 ............................ ACGGGTAGCCGCGCGCATCGTGCACGACCAGC 17647 28 100.0 32 ............................ TCGACGCAGTCGCTCGATCAGGTCACGCAGGC 17707 28 100.0 32 ............................ TACGCCGCCGCCGAGACCCGCACCAACGCCGC 17767 28 96.4 32 .........T.................. ACCAGTCGCCGGCCGGGGTGAGGATGCGCGCC 17827 28 100.0 32 ............................ TCGTCGATCACCACGAGGTCGAAGTGGCCGCT 17887 28 96.4 32 .......................G.... TACGTGCAGCGCAAGGGGCATGTTGACCTCAA 17947 28 82.1 76 ..............C...C...TC...G GGCCGGTGGTCGCGCTCGTTCGGTGCTGGATGGGCCTCTCGGCGGTCGTCCGCAGGCGGGCTCCTGCGGCAGGGGC 18051 27 75.0 0 ....G.......-G....G..G.C..C. | A [18071] ========== ====== ====== ====== ============================ ============================================================================ ================== 10 28 95.0 37 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : AGCTCAGAAATCCTTCATCGATTGGCGCCAGTTGCCGGCCATGTTCACTGCCGCATAGGCAGCTCAGAAAATGATCTGATTGCCCACGCCCCCGCCCCAGAGGTTCACTGCCGCATAGGCAGCTCAGAAACTTGCGGGCGGCGATGCGCTAACGGTGCACGAGTTCACTGCCGCATAGGCAGCTCAGAAAATGTAGCTGATCGTCAGCGTCCCCGGGGCTGGGTTCACTGCAGGGCAAACGCATCAAGCTTCCCTAATATTCTAAAGGTGTAATAACCTGTGTTGTTTTGATCGCCTGGAGCCTTGAAGCGCTCTATCATACACGTTTCGCGTTTCGGCGAGGCCTCCGGTTAGTAGCAAGAAGCCTCAGGGCAAATCCCCTCGTACGAACAATGCGGGACGAACGATCAAATTTGCACTCAGCAGGGCCTCCGGCAATCGCATGAATTGCAGCTATCGGCGCCATCTATATTAGGATGCGTTGATGCGTTTGCCCTGGG # Right flank : AGCGGGCGGCCTGCCGCTAGAATGGTCGGCAGTCCAGCGACCCACGATCTGCTCATGGCCCGACTCCTCTTGTTCAACAAGCCCTACGGGGTGCTCAGCCAGTTCACCGGCGGCGGTCCGGGCGAGACGCTGGCGGCCTTCATCCAGCTGCCGGGCCTCTATCCGGCGGGGCGGCTCGATAAGGACAGCGAGGGGTTGTTGCTGTTGACCGACGACGGGGGGCTTCAGCATCGCCTCAGCCATCCGCGCCACAAGCAGTGGAAGACGTACTGGGTGCAGGTCGAGGGGATCCCGGAGGCAGGGCAGCTCGAGCGGTTGCGGCGCGGGGTGGAGTTGAACGATGGTCCGACGCGCCCGGCGCGGGTCCGCCCGCTCGCGGAGCCTGCGCTGTGGCCACGGGATCCGCCGGTGCGCTTTCGCCGGCAGATCCCGACCGCCTGGATCGAGATCGCGATCCGCGAGGGCCGCAACCGTCAGGTGCGGAGGATGACGGCCGCGGT # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.34, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 12074-13555 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRSA01000022.1 Thiococcus pfennigii strain DSM 228 scaffold0022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 12074 36 100.0 35 .................................... ATCTGGTAGGCTCTTAATTAACCCTCTCACCCTAG 12145 36 100.0 36 .................................... TCGTAGAGCGTGCGGTAATTCTCCTCCTTCACGTCC 12217 36 100.0 34 .................................... ATTGCGGGAGTCCACTTTAGGTGGCCAAAGAACG 12287 36 100.0 37 .................................... TTTTTTGAGCGTTAAATTCGCCCTTCGTTTGTCAAGC 12360 36 100.0 35 .................................... CAGTAACCCGACGATTTCAGGGAGAATATCAATGA 12431 36 100.0 34 .................................... TCCTCTTGATTTCGGCAGCACTCGCTGCCGTTAG 12501 36 100.0 35 .................................... GCTACCACCGCCGATGCCAAAGTTCACCACACTCG 12572 36 100.0 35 .................................... TCCGTTTCAGAGCAAATACTCTTTTCAACTGAGAT 12643 36 100.0 37 .................................... GAAAAAAACTTCTTTCATCTTCGCCTCCGTCTCTTAT 12716 36 100.0 37 .................................... GAAAAAAACTTCTTTCATCTTCGCCTCCGTCTCTTAT 12789 36 97.2 37 ...................................T AAAATTCCTTCTTTGGAAAATTCCCATTGCTCATTTT 12862 36 100.0 38 .................................... GATGCGTGTAGACGAACATGACGGTTCTCCTCCAGAAT 12936 36 100.0 37 .................................... CCAGAAGGGTCGAACGGATTGCGATTTTCATTCGCGG 13009 36 100.0 36 .................................... AATTTTTTAAGGTTCATATCTCTCTCCGTTTAGGGA 13081 36 100.0 36 .................................... CAAACTTGTTTGCTCCGCGAGCTTCTCCAAGGCATC 13153 36 100.0 37 .................................... CTTTCAGGGTATGTACGTTTATCACCTTGTCACCTCC 13226 36 100.0 38 .................................... TCAGACATCTACTCAAGACCCTTAATCATCTGAATGTA 13300 36 100.0 37 .................................... AGTTACCCATGTTTGGGTCTTGTGGCTCTTCAAGACC 13373 36 100.0 37 .................................... ATGCCGAGTCGGGCATGACAAATATCCTCTGTTGATT 13446 36 97.2 38 ............................G....... CGCCCATGACCTTCTTCCGATCAGCCTTGGAGAGAAGG 13520 36 94.4 0 ................................CG.. | ========== ====== ====== ====== ==================================== ====================================== ================== 21 36 99.5 36 CTTCCTTTGAATGAATTCCGCTTGAGGAATGGAAAC # Left flank : AACCAGCGGCTGGCGCCGGCTCAGCCGTTTGCGAGAACTTGAGGTCCACAAAAAAGCCAAATTTTTTCCGTTACTTGTGCCACAAATCGCAACCTGGATGGGAACTCTGGGGCGGCGCAGAATCTCGCAAACTTCCGCCGGCGCCGCGGCAGCGTTACGGTTTGCGGGACTTTGCCGCGCCAGCCTCCCGCATCCTAAGTCCCCAGGCCCGCCAACGGCGCGGGCCGACAGCATCCGACCCGTAAATAGTCAACGCGTCGATTCTCGAAAACTCTACTGTCCGCGTGCCTGGAGCATCGCTTTGCGAACCATGCTTTCCATGATAGATCAGTGGCTTGACCCTCCACTCCCCCCGGCTGTCGACTCATTTTTCAGGTCTGCCGACTGGCTTTTTCGATTTTTTGTGCGACACTTAGGTTGTCCCGCAAAATCCGTGGCTTGGCTACGCGAGCGCCGCTCTGGGCGTAGACCGCCCGGCGCAAGCATCTGATTCTGCCGGG # Right flank : CCTGGTTTCTCGTTCGCGGGGCGGCACTGCGATAGACCTTGCGGCGACACGGAAGTCAACAATTTCAGGCGCATGCGCACGTCACGCCCTAAAAATCAGCGTTCCGGCGTCGGTGACGATTGGTGCTGGAGATCTTGGGTGCGGTGCGGGGTAAAGAGGTGTGGCGGGGCAGCAGAGCCCCAATGCCCCTGGCCGTATGCTGAGCGCGGCCGCGGGCCTAACTGCTGCCGCCGGGTCGGTCCGCGGGATGCCTGGGTGAAGTTCCGTTCGACGCTTGACAACCCGGCGGATTGGCGGGAGAGTCAGAGGCATGTTGACACGCTGGACCGCGACACCGTTAACGCCACTGGTCACCGCCGGCGCGGAGAACAGGCCCGATGAGCCGCGCCTGCTCGCAGAGGGCTTGCGCGCGCCCGAGGTGAAGGGCATGGCCCGATACTGGTTCCGCCTGCTCGCGGCAACCGTGTTCGGTGGCGATGACGATACGGCGGTTTCAACCG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCTTTGAATGAATTCCGCTTGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 16016-13450 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRSA01000006.1 Thiococcus pfennigii strain DSM 228 scaffold0006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 16015 36 100.0 38 .................................... AAATCGCGCTCGGCCGGGTACTCGGCGATCACGCGGTC 15941 36 100.0 35 .................................... GAACCCAAGGTAGGCGATCGGCCTGCCTCCCGCGC 15870 36 100.0 38 .................................... AATCTGCAGCCGGGCGCGGTGGTGCAGACGAGGCGCTA 15796 36 100.0 35 .................................... CAGACCTCCGGCCTCAGCCAGGGCGACATCGCCCG 15725 36 100.0 35 .................................... ATGAGCTTTCGCCCCCGGGCGGCCTCCAGGAGCCG 15654 36 100.0 35 .................................... CGGAGCTGCGCACCCTGGGTATCGACCCCACGGCC 15583 36 100.0 35 .................................... GAACACCGTGGTTGATATCGAAGCCTTGCGCGCCC 15512 36 100.0 37 .................................... GGCGATCATCGCATGCAAGTCATCCGGCCTTCGGCAC 15439 36 100.0 35 .................................... CGCTGATTGCCGAGGGCTTGGAGTCGACGCGCATC 15368 36 100.0 36 .................................... CGCGCCTTGCCCGTCTGCCAGCCATAGCGGATGCCG 15296 36 100.0 36 .................................... GCCGCGGCCTGGGTGGCGGCCGACAGCACGGCGGTG 15224 36 100.0 35 .................................... CGCAGGGAGCGGTGTACGACGCGGAGATGCGACAG 15153 36 100.0 39 .................................... GTGGGAAGTGCCCCATCGCCGTCGGCGAGCCGTGCTTGT 15078 36 100.0 35 .................................... GGGGCGCTATGAGCGACCCCCGCCGCGGCGCCTGC 15007 36 100.0 34 .................................... TCCATCGGACACGACGCGGCCGGCATCATCCCCG 14937 36 100.0 35 .................................... ACGATGTTGGCCTGCTTACTGTCGAGCCACTCCAG 14866 36 100.0 37 .................................... AACGACGAGCTGGCCGCCGTGCGCCAGCGCTGGGAGG 14793 36 100.0 38 .................................... ACCTGGGCGGCGCCGCTGCCGCTCTGGCAAGAGGGGCT 14719 36 100.0 37 .................................... ATGTCCAAGGGCACCATCTCGGCCGAGGAGCTGCGGC 14646 36 100.0 36 .................................... TGCACATCCTCTCGACCCACAACGGCGAGGAAAACC 14574 36 100.0 36 .................................... TTTGGCAATCGGTCTGTGATTCTGCAAAACGCGACG 14502 36 100.0 37 .................................... AGGCCCAAAAGATCTACCGCCCGCGGGCCGCCTCGGC 14429 36 100.0 36 .................................... ACCGTAATCACGACGACGTCACCACACGAGCCAGGA 14357 36 100.0 36 .................................... CCGCGGACATCCTCAAGGTGTTCGAAGACGGAGCAG 14285 36 100.0 38 .................................... ACGGAAGCGGAGATGGAGGCGCAGGCCGCGCTGACCGA 14211 36 100.0 34 .................................... GCGCGACGCGCGCGGACAGATCGATTTCTACGGC 14141 36 100.0 41 .................................... ACCGTAATCACGACGACGTCACCACACGAGCCAGNTACGGC 14064 36 100.0 38 .................................... GACTTCGTCCCCTACCGGTTGCAGATCCCGTTCCTCGA 13990 36 100.0 36 .................................... ACCACTAACAAGGCCGGGGTCGACATCATCAAGCGA 13918 36 100.0 37 .................................... GCGCGCTGGTGGCCCGGGCGCTCTACCCGATCAGCCC 13845 36 100.0 37 .................................... CGTTGAGGCGGCGCGAACAGTCGCGGCTCGATCCAGC 13772 36 100.0 36 .................................... ACGTGGCTGGCGGCGGTGAGGTCGATGGATGTGCCG 13700 36 100.0 36 .................................... GCGCCGCCCTTGAGCTCGGGCGATAGGCGCTTGACG 13628 36 100.0 36 .................................... ATGCCGCCGTGCTCGTCGACGAGGACGGGGTTGGTG 13556 36 100.0 35 .................................... CCTCCCTGGCCGCCGCCCCGGGCGTCGCCCTGGTG 13485 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 36 36 100.0 36 ACGAACCCATCCGAGATGCCGAAAGGCGTTGAGCAC # Left flank : TATGACATCCGCGATCCGCGGCGTTGGCGGCGCGCCTACAGGATCCTCAAGGGCTCGGGCGAGCGCATACAATATTCTCTCTTTCGCTGCCGTCTATCCAAGACCGAGATGGAGCATTTACGATGGGAACTCCATCGCGAACTCGCCGACGAGGACGACCTGATGTTCGTCCACCTCTGCCCACGCTGCGCCGGCCGCGTGAAGATCAAAGGCAGCGCTGAAGACTGGTCGCACGATCCTCCGCGCTACCAGATTCTGTGACGGCAAGCACCGACGGGTGGAGCGACCTGGCGCGCAGCAGAATACAAGACAATCGATTTTTAAACAAAAAGTTACCAGCCATTCATCCCAAAACCGAACCATGGCGAACGCAAGCCTCTGTTCTTCAATCTCGATCAGGATCTGCACCTCTTTTTTCGTAGCACGTGCGGTGTCTCGACTCCAGATGCCTGCGCGGGAGACCAAGACAACGAGAATAGACAAAGGGATACAACCCAGCG # Right flank : ATCTCGACAGCCAGCACTGGCGATCGGGGACTATGCCTCCGCCGCGGGGGGCAGCAGCGGCTGGCCAGCACTCGGTCGGCGCTACCGTGCCGAGGTCTTCCTGTCCGAGGGCAGCCAGCACGATGACATCTTCGACTCCAGGGGACCTTGAAAAATCGCCATCCGGGGACGTTCTCGAGACGGGACCTCCTTGCCCCGCGCGGGCACCTTGAATGTTCAAGGCGCCCTACAGGCGCGAGCCGTCGATCGCCGACACCCTGTCGCAGTACCAGAAGCGGTCCAGTTGCTGCACCTGACGCGATGACGCCGGCTGGCCGCCGCATCTCCGGGTGCGGCGGCGCCGCGCGCCGGGTCGGCGGCTCGATCACCGTGCCCAGCCTGGGCCTGTTCGTGATGCCGGCGATCCAGCCGCCGGCCGATATGGGTTGTCGGTCAGCGCTCGGGCGGCTCGACGCCGTACCCATCGCTCAGTGATTCGATGATCCGGCATTCCTCGATCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACGAACCCATCCGAGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 26121-29043 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRSA01000010.1 Thiococcus pfennigii strain DSM 228 scaffold0010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 26121 27 85.7 37 AG..-.G..................... TCACCGGTCGCCGTCGCGTACCGCTCCGAGTGCTCCC G [26125] 26186 28 100.0 36 ............................ CCGCTCCAGGGCGCGCTCCTGGGCGCGCAGGTCGCG 26250 28 96.4 36 ..T......................... CATCGCCGATATCGGGCATCCGCTCGGTCGTGCGCT 26314 28 100.0 35 ............................ GCCGACGCGGCGAACGCCGAGATGTTGAACCACGA 26377 28 100.0 36 ............................ TCAGCTCGGCGCTGATCTGGGGCGATGTTCGTACAC 26441 28 100.0 36 ............................ ATAACTCGCGCCGTGCTCGCCGATCTCGATCGAGAC 26505 28 100.0 36 ............................ GCTTGATGCGCGGCGTCCGCCGACGCTGGCGGAGAT 26569 28 100.0 36 ............................ TGGCCACAGGAAGGCGACGCGGTGACGATGCCCATT 26633 28 100.0 36 ............................ GAGGTGTTGCAGACGGCGCCCGGGGATGATGGGGAA 26697 28 100.0 37 ............................ ACCCGGGCGCGTCCAAGTCGGTGTTCGCTGTGGAACA 26762 28 100.0 37 ............................ GCTTGCTGTCGTTGGCTTATCCATTGTTCACCTATAC 26827 28 100.0 36 ............................ TCACCAGCAGCAACGCCAGCGGCAGCGGCGCGTGGT 26891 28 100.0 36 ............................ CAGGATCACACTTCGGTTGCCGAACATTTCCTGAAC 26955 28 100.0 36 ............................ CAGCGGCGGACCCGGCGCGGGAAAAACGGCTTACGT 27019 28 100.0 36 ............................ GCGCAAAAGCTCGCGCTTGCCCTGGGATGGCTTAAT 27083 28 100.0 37 ............................ ACGCTGTCGCTCGATGCGGCGTCGTGGATATGGGTGT 27148 28 96.4 36 ...........................T CCTCGGGCGCACGGCCGCGCCGCTCATCGGGGCGAT 27212 28 100.0 36 ............................ TCGCCAGTTGACCTCGCTCAGCCACACCTCGCACCC 27276 28 96.4 36 .......T.................... CCTGGCGATCATGGCGCTGAACGGCAAGAAGCAGCT 27340 28 96.4 36 .......................A.... TCGCAGGCGTTCGCGGCGCTCGGGACGCAATCCGGT 27404 28 100.0 37 ............................ TCCTGGCGATCATGGCGCTCAACGGCAAGAAGCAGCT 27469 28 100.0 37 ............................ GCGCTGTGATGTGGCTCGCCGAATTGCCTACCCCAGC 27534 28 100.0 36 ............................ CATCCGCTGCGCCATCGTCAGCACCTCGTCGGCGAT 27598 28 100.0 36 ............................ CGGATTTCCCGATGCGCGCGTGGCGCGTCGGCCCAT 27662 28 100.0 37 ............................ TCTTGACCGCCGCGCTGGCCGGCGCCGAGCCGCGCGC 27727 28 100.0 36 ............................ CCTGCTCGACGGGCCGAAGAAGGGCAAGGGCAAGGA 27791 28 100.0 36 ............................ CCAGGGCGTCCTCGCCGATGCGCACCCACACGCCAT 27855 28 100.0 37 ............................ CCGGGCAGGCGTCGTTCACCGCCGTCCTGGCGGACGG 27920 28 100.0 36 ............................ CACCTCGTCGTAGCGGCTCACGCTCTCATCGGGCTC 27984 28 96.4 37 ..........................G. TGTGGCAAAAACTGGCCGCCGCGGATCTTCGTTCAAT 28049 28 100.0 37 ............................ CGCCGTAGTTGCGGCTGATGCGCTCCTTGAGCTCGGT 28114 28 100.0 36 ............................ GTTCCCTCTTGGCCGCGCTGGCGCTGAGTTCTGGAC 28178 28 100.0 36 ............................ GCCGATTGGCAGATCAGCCTCTTCCGGCCAAGCCGT 28242 28 100.0 36 ............................ CTCCTTCGCCGCCGATTCGCTCAGTAGGTTGGCCTT 28306 28 100.0 36 ............................ CGACCATGACTGCGTCGAAGTCGAATACACAGACCC 28370 28 100.0 36 ............................ ATCCTGCGTGCGCATGGGCAGGAACTGCAAGCCAAT 28434 28 100.0 38 ............................ TCGCTGCCTTCAATGCGGCGCTCGGGCTAGGTCCCTGG 28500 28 100.0 36 ............................ AAGCGCATCTATCAGATACTCGTACCGCTGCGCATT 28564 28 100.0 36 ............................ CCTACTGCCAGGAGAGATGTAGCTTGCGACGTCCAC 28628 28 100.0 36 ............................ CAACCTCTTCGAGCCGCGCCCGGTGCGCACGGAGAC 28692 28 100.0 38 ............................ GCGTCGTCGGCCATCCACCGAAGAGGTTGCAGCGGATC 28758 28 100.0 37 ............................ CAGCCGGGTGCCAGCCGCAGCTCCACGGCCCTTATGA 28823 28 100.0 36 ............................ GATGAATTCCCCGCGCAGGTCGGGGAGGTTGAAGGT 28887 28 100.0 36 ............................ TCTATCGTGAGCGCTGGTACGAGCCGCCCGTGCCCT 28951 28 100.0 37 ............................ CCGCGGCGTTGGCGGCCGCGTCGATGTAGAGCTCGAA 29016 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 46 28 99.3 36 CTCATAACCCCTCATGGGGATTCGGAAC # Left flank : GCTATGACCTATGAAATCCTGGTAATCGATGACGAAGAGTTCGTCCGCGACGCCTTCACGCTGGCCCTCACAGTCGAGCCGGTCTATCACGTGAGAACGGCGGACAGCGGCCAGACCGGTCTCTCGATGGCCCGCGAGCAGCGTCCGGACCTCATCTTCCTCGATCTGAACATGCCCAAGATGAGTGGGGTCGAGGTGATGCGCGCGCTGCTCGGCGAAGACCCAACGCTGCGCATCTACATCGTGACCGCCTTCCACCGCGAGTTCATGGAAGAGCTCCGTGACGCGCGGGACTCCGGGCTTGCATTCGAGCTGGCGCGCAAGCCGCTTGGTGCCGAGCAGATTCGCACGGTCGTCCATGGCGCCCTCGGCGGTGTCGCCGTGGACCCGAGCACAGGGTTGGAGTGACTGAAGGGCACCTCGAGAAATTCAAGGTGCCGGTGCGCGGCAAGAAGTTACGTCTTTGCGGGCAGAAGGCTCGCTCGGTGGCCGGAGTTATG # Right flank : CCCTCGCAATTGTAGGCATTTTTTGGCGCTGACAAGTCCCAGCGCGTTGGAAATCGTCGCCGAAACCTTGATCCCGAACGTCGGAATGCTGGGTTATGTGCTTCAATGACGGTCGAAGTCGGACTTACAAGACACAGTAGTCGCTCTTGTGCCGATCATCATCCAACCTGGCAGGTTCCCCTTTTCCAGAATCGGTTTTTACCAGATGAGTGACCCGAACGTTTCTCCGGTTCACCGCCGTAATTTCGGTCAAACGGTCGTCTGGAATCATCATCTCGCTGAGGTCCCGACGCAAGCGTACCGCGTCTGCTTCAGTAATATCTCCGGTAAAGACCGAAAATTGCTCGTGGTTCAGATAGCGGCGCAAAACCTTACGGAACAGCCCCGTCCTTTTGGCCGGGACATCATAGGTGACGAGCATGAACATTCCTAGGGCTGCCTCTTGAAGGATTCATACTCCGAGACTTCAAGTACTTCCCGCTCCAGAGCGAGCGCGTCGC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATAACCCCTCATGGGGATTCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA //