Array 1 3590-759 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJU01000058.1 Moraxella catarrhalis strain 4849094R NODE_58_length_3755_cov_7.272602, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3589 28 100.0 32 ............................ ATCAGAATTGAACAAATTGTTGGTAAGCAAAA 3529 28 100.0 32 ............................ TTTGGCACTTGCCGCCGCTTGCTCTGGATTTT 3469 28 100.0 32 ............................ TTGAATGCATTGCCTAGGATGGTTCGCTCATC 3409 28 100.0 32 ............................ TAGAAAGCGTCCTAGCGTGCGTTATATTGCCG 3349 28 100.0 32 ............................ CACGGCTCTCATGAAAACACCGCTCCAGTCAT 3289 28 100.0 33 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGTG 3228 28 100.0 33 ............................ TTTGGCACTTGCCGCCGCTTGCTCTGGATTTTC 3167 28 100.0 32 ............................ GTAAACTTTACGCCCAATGTAGCGACTATTTT 3107 28 100.0 33 ............................ AGTATGGAATCGGCAACTACTCAGCTTGGCTAT 3046 28 100.0 32 ............................ ACAGGCAAGAATACTTATCATTTTGGGCATTG 2986 28 100.0 32 ............................ CAATCATTAATGCGTTGGCGGTGGCGTTTTTT 2926 28 100.0 32 ............................ TAACCAACTGAGCTATGAGCCCTTAAAAAAAT 2866 28 100.0 32 ............................ AAAAACTGCAAGCACTTGGAATATTGATTTTC 2806 28 100.0 32 ............................ TTTATCACAATGCGTCAAACACAAGAAGCATT 2746 28 100.0 33 ............................ ATAAAAGTGCTGGTAATAGCGATGTAACAGCAG 2685 28 100.0 32 ............................ AAAAGCGTGCAAGTAGAATCTAATTTGCCCAA 2625 28 100.0 33 ............................ GCTGATGTTGCTTTCAATTGTGCCGATTTTGCC 2564 28 100.0 32 ............................ ATACATTGCCACCAATATCAGATAGACTTAAA 2504 28 100.0 32 ............................ TGTGCCAAGTCCTGGTACAAGCCCTGATACTT 2444 28 100.0 32 ............................ CATACAAAATTCATTAAAAATAAGCTCTTGTT 2384 28 100.0 32 ............................ TTTATTTTTCGATATTTTGTGCATTTTACACT 2324 28 100.0 33 ............................ GCCCAAGGGGTTTTTAGCACATACACGCCGTCA 2263 28 100.0 32 ............................ ACGTGTGAAAAAGCGTGTCACTGCATCATAAA 2203 28 100.0 32 ............................ TTCGCCTGCGTTTTGACTTGCCTGTATTTTTG 2143 28 100.0 32 ............................ GCTCGGATAAGCTTTGGTTTGTCGTTGTTAGT 2083 28 100.0 32 ............................ TCTTGACCACAGTTTACGCACGCCGATTGGCA 2023 28 100.0 32 ............................ AAATTCCTTTAGTGCTTACCAATACAGCTATA 1963 28 100.0 32 ............................ AATTCACGGATTGATGAGGTATGAGACCCCAC 1903 28 100.0 33 ............................ TACTAACTCTTCACGACCGCACAGGTCGCTTAG 1842 28 100.0 32 ............................ TTTTATCATAATTACTTGTTATTTCTTATTAT 1782 28 96.4 32 ...................A........ CACTCAATGTATAACACCGTCCGCACCAGTGA 1722 28 100.0 32 ............................ ACTTGCCCAGTCTGTCCAATCGCTTGTATTGC 1662 28 100.0 32 ............................ CTGGCGGCTGGGAAGTTAAACAAACAGCTTAT 1602 28 100.0 32 ............................ TTCAGTTCTTTCACTTGATAATGAACCTGCTT 1542 28 100.0 32 ............................ TATATCCGCAGAGCTTTAGCAGATAATGGTAG 1482 28 100.0 32 ............................ AACTTTTTAAAATACTGCTTGATGGATTCATC 1422 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 1362 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 1302 28 100.0 9 ............................ TTTTGCTGT Deletion [1266] 1265 28 100.0 32 ............................ AGTATTTGTATTGATTGATGGTGATTGAGTGC 1205 28 100.0 32 ............................ GTTGAGCTGTATCCTCTGATTCTCTTATTGAT 1145 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 1085 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 1025 28 100.0 31 ............................ AAAAACCGTTGTGGATAAAATCGCTCCTCTA 966 28 100.0 32 ............................ GAAAACATGGGCTTTTTATCGCCGTGCGGACT 906 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 846 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 786 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 48 28 99.9 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : CACACGACAAGCACTCAGCCTAAGGATACTATACAGTCCAAAGGAAGGCCGGTTGCTTGCTTGTTTTTCTTAAGGCAAACACACCCACTCTACGCCACGGAAGGTCAGCGCCGCGGCTGAAAAATGTCATAAGGAGCAGACCCACCAGACAATCCGCCGATAAGA # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGTATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //