Array 1 3365453-3366398 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020570.1 Streptomyces violaceoruber strain S21 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 3365453 30 100.0 31 .............................. CGCCGCCCACCACCAGGCGCAGGCCGAGGTC 3365514 30 100.0 31 .............................. TCCGTCACGCGTCACGGTGATGCGTGACGGT 3365575 30 96.7 32 .............................G ACGTCCGCTTCCGAATGCTCGAACCCCACGAG 3365637 30 100.0 31 .............................. GGGCCAGCGGGCCGTGCCGCTGGTGCGGCGA 3365698 30 96.7 31 ..........................C... TCCCGTCGCATTCCTCCATCAGTTCCAGACC 3365759 30 93.3 31 ..........................C..G GGTGTGGGCGGAGAGTGGCGAAGCGAGCGCC 3365820 30 93.3 31 ..........................C..G ATCTTCAAGGTGGTCAAGTCCCACACCGCCC 3365881 30 93.3 31 ..........................C..A GGGCGAGGCAGGTGTCCGTGTCGCCGTTGGC 3365942 30 93.3 31 ..........................C..C TGGCCATGTACACCGAGGTCATGGAGGTCGC 3366003 30 90.0 31 .C........................C..G TCGGCCACGACGGCGACGGCGCCCAGTGCAA 3366064 30 90.0 31 ........................A.C.A. AGGCGCCCCACCAACGGTGCAGGGGGATGAA 3366125 30 90.0 31 ...............A..........C..C ACAACCTGCTGCCGCCCGGCGTCGCCTCGAT 3366186 30 90.0 31 ................G.........C..G TCTTGACCGGCTTGTCGCCGATACGTGTGCC 3366247 30 93.3 31 ..........................C..A TGGCGGCCTCGGAGCACAGGCGGCGGGCGTC 3366308 30 90.0 31 .........................CC..C GGCCCGTCAGCCGGACGGTCGGTATCCCCTC 3366369 30 83.3 0 .......................CCAG.G. | ========== ====== ====== ====== ============================== ================================ ================== 16 30 93.3 31 GTGGTCCCCGCGCACGCGGGGGTGGTTCCT # Left flank : AACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGAGCCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCAGCGTCTCGATGCCCGACCTCTGAAAGTCAACCGACGACGGGCGACACACACCGCAGGTTGCAACCGCCGCCCTGCGCAAGCACCTCGGGAGACCGCCATACCGGCCCCGAAGGAATAGCCGCGCCCCAAGCGCACACCATCAGCCTCCGCCACCCCCTCAACCCGTCGAACCCGTCGAACCCCAACCACGAAGCCCCTCCCGAAACGGGGTAGGCACACCGCACACCGGGGCCCAAAGCCCACGAAGGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGACCGGGTGGCGGGCAGAATGGCATCAGCCGAACCACACCTATGACCACTTTGCCCCGGAGAGCGAGATATGCCAGTTTCTCAACAAGTTAGTAAAAACCGCCTCCCCGCCACCTAAACCCGCAGGTCACGAACA # Right flank : TGAATGGTCGCGTAGCTCGCACCGTAGCCCGGACGAGGAACAGCCCACCGAATCAGGACGTTTGGTCGTCGTCCTCGATGTCGTCTTCCCCTGCGCGTTGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGTGATGTGGAAGCTGTGGTTGCCGGAGTGGTCCTCGTACAGGCCGCACCACTGCCGATAGTTCTCGCGGAGGTGGTGGATGCGGTAAGGGCACTGGGCGAGGAGGACGAGCCGATGGTGGACGCGGTGACCGCCCGCACTCGTCGCCCACAGAAACCACAGGCTCGCGGGCGGCTCCGTCTCGGCGGTCCACAGGCGGGCGGCGTGCTCGGTGGTCTCGTCGTGCTCACCCAACTCGCACAGCACGTACGGCTTGGCGTCCAGGAGGTCTTCCGCGTCGTCGGGGCCGTCGTCCATGGCGAGCAGGGCGGGGAGTGCTTCGCCGGGCGGGAGGTTGGTGATAGCGGTGCATTGC # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTTCCT # Alternate repeat : GTGGTCCCCGCGCACGCGGGGGTGGTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3371611-3372611 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020570.1 Streptomyces violaceoruber strain S21 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3371611 30 96.7 31 .............................G TGGGCGCCCCGGCCAGGTTCTCGGTTGTGAT 3371672 30 96.7 31 .............................A GAGCCGCACGAGGGCCCACCACAAACCCTCA 3371733 30 100.0 31 .............................. CGTACGGGTCGTCCGAGGTCTTCCCCAGGTA 3371794 30 96.7 29 ..................A........... GGACGCCCAGCGTTCCGCAAGGCCCGGTG 3371853 30 96.7 31 .............................A CCCCTGTTTATGTCCAAAATCTTGGAACGCG 3371914 30 100.0 31 .............................. CGAAAGCGACGTCCTGGGTGCTACGCATCAG 3371975 30 96.7 31 .............................A AGTACCTGCACTGGGACGGCGTGACCGAGCC 3372036 30 93.3 31 ............................TC TCCAGCTCCGCCCGGACCCCGGACGTCACCG 3372097 30 93.3 29 ............................GC GGACGCTGCCGGCGTTCCCCGCAAATTCG 3372156 30 96.7 31 .............................C GAGGGAACACCGCACATGACACCGAACCCGA 3372217 30 100.0 31 .............................. AGGGGAGTTGACTGTCCGAACATCAACAGAG 3372278 30 96.7 30 .............................G AGTCGTGAAGACGGGCGGAAGGCCGAGTTG 3372338 30 96.7 31 .............................G CCATCGCCCGAGAGATCCGCCGGTCGTCGTC 3372399 30 100.0 31 .............................. ACCACCTCGGTACGTACTGACTACCTGGGCC 3372460 30 96.7 31 .............................G CGATCGTCAGCACGTGGATCCCGCGCGCCGG 3372521 30 86.7 31 ..............T.T......T.....C CGCTAGGTTGCAAAGAGAGATTATGGGGGCC 3372582 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== =============================== ================== 17 30 96.3 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : CCGACAAAATCCCGCCCTGCCTCCCCGCAACGGCAGAAGTCCACTCGCCGGGCGCCAATGAACCCGCCCACGAAACCCTCGTCGAGTGCACCAACTGCCGCCGCCCAGGCCCATCGGAAGCCCTTCCTGACGGCCTCTGCCGCCCCTGCCACCGCGCCCACACCACGGGCGGCAACGACACTGCCGCACCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAGCCCGTTTAGCTCCCCAACCGCCGCACCCCTCGTAGGGCAGGTCGGGCGCACCGCACCCCGGGGCCCACACCTGCGAAAGACAGAGCCGTACCTCTTGCACCGAAGCCGGGCCGCCCAGTCTGGCGACGGGCAGAATGGCATCAGCCAAACCACACGTGACCACTCTGCGACGGAAGGTGAGATATGTCGGCTTCTCAACAACACAGCAAAAACCGCCTTCCCACCACCTAAACCCCCAGGTCACGAAGG # Right flank : CATAGATTGCCCCGGCCGCCCCGGAAGGAATGATCAAAAATGCGACCCGCCCGATTCCAGGACTTCGCCGTAGAAGCGCTCCCCAAGGCGCCGGACGTCAAGAGCGTCGAACCGTGGCAGGAGCCGGACCGCCCCTTCGGCGTGCACATCCTGTTCATGAGCGGTGCCCAGATCTGGGCGGCCATCACGGCCACAGCCGCTCCGGGCGAGGACTACAAGCAGCCGGAGAACCCTGTCAGCTACGAAGCTCCCGCCGAGGTGGCGTACCCGGACCTGTATGAGGGCGGGAAGGTCACTCCGCAACTGGCGGAGAAGTACCTTGCCGCAGCTTTCACGAACAGTGGCTCACCGGAGATCGAGTCGGTATACGCCTACTCTGTGAAAGACCCCGCCACCGCCCACCCTGGCCTCGGCCTGCGGTTTCACAGCGAGGCCCGGATCCAGCTGCTGTTCCAGCACACCGCCCGCTCCGGCCAGGACAAGGGCAACTCACCTTTCGA # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3398125-3398277 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020570.1 Streptomyces violaceoruber strain S21 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 3398125 30 100.0 32 .............................. GCTCGGCGCGGGCCTTCTTCCGCTCGGCCTTG 3398187 30 96.7 31 .............................G CCGTCCCTGACGACGTCATGACGCAGGCCAG 3398248 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================ ================== 3 30 98.9 32 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : ACCGACAAAATCCCACCCCACATCCCCAGGGCGACAGAAGCCCGATCGCCGGACGCCACGGAACCAACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCACCACAAGCCCTCCCCGACGGCCTCTGCCACCCCTGCCACCACGCGCACACCCACGGCGGCGACCCCACCACCCCCACCCCGGACGAGATCGCCTCCGTCAAAGCCCACGTCGCCAACCTCCGCAACCTCCTCAAGCCCGTCTAACCCCCAGGCGATGGGTCGTTGTTGGGCAGGACGGCCACACCGCGCCCCGGGGCCGACTCCACGGAAGGCAGAGCCACGCCCCTTCCACCGAAGCCGGGACAATGAGACCAGTGGTGCGCAGAATGGCATCAGCCAAACCACACACGTGACCACTTTGCGCCAGAAGGTGAGATATGCCGGTTTCCCAACAACATGGTAAAAACCGCCTCCCCGTCACCTAAACCCCCAGGTCACGAAGG # Right flank : ACGGCACGGCTGCGCGCCGCCCTGTGGTCCCGCGAACGCGGGGGCGACCCTGCGCCCCCGAGTGAAGTGGCAGGTCACACCCCGCGCGGGTACTCCCCCTTCCCCGTCCCGATGATCCCGCCCGGGTCCCGCAACCACACCTGCTGACCCCGGTCGGTCACCGTCAACCCGAACTCCTCCGCACCAGGGCGACCGGCCGACTCGTACTCCCACCAGGTCTGCTCGATCTCCTCCCACAACAGCCCGATCCCGTACTGCCACACCTCCTCTCCCGAAGCCGTCGAAGCGCCACCGACCTCGCTCGTCACCCACACGCGCACCCCGCCACCGGCGACACTCTGGTGAACCATCCGCACACCGGGCAGTCGCGCCCCCGCGAACAACGCGAACCCGCGGTCCAGCAACCGGGCCGGGTCCAGACCGGCCGCCCGCGCTCGCCCCCTCCCCCGTACCTCATGCAGATCGGGCACGCGGTGCGAGCGCATCGGCATGTACGTGGC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.20,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3404532-3405037 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020570.1 Streptomyces violaceoruber strain S21 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================================================================== ================== 3404532 30 93.3 31 ...............T.............A GCGACGCGTGGCTGTCGGTCATCAGGATTGT 3404593 30 100.0 31 .............................. GGTCGCGCGTCTCGGCGAACTCGGCGCGCTT 3404654 30 96.7 31 .............................G GCAACTCGGCGCGCCACCACCCGGTGCGGCG 3404715 30 100.0 31 .............................. GGCCGCACTGGCACTACCGCACCGTCGCCTG CGG [3404733] 3404779 30 90.0 31 ...G.......T.................G CGGTGCGAAAGCCGAGCTGCGCCCAGACCGG 3404840 30 83.3 138 ...GAG......................GT CGGCCCACCCCCGCACCTGCCCCCGGCCCGGGAGCGTCCAGGCGCGGCCCGCCCGAGGCCGCCGCCCTCGAAGATCCGCCCCTACGCTTCCGACGCCCCCGACACCGCCACCCGGAACCCCACCCCGATCGCCGCCAG 3405008 30 60.0 0 ..C....T..TA.G...C.T..C..CGGG. | ========== ====== ====== ====== ============================== ========================================================================================================================================== ================== 7 30 89.0 49 GTGCTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : GAGATGGGCAAGCTGGGCGGGGTCGGTCACTCGCTCGCCCTGAACGAGCACGTCGGTGGAGCCCTCAACCTCGTAGAGGGTGGGGCCATCCCCGTCGTCACTGGTGGTGCCGAGAAACCTGAGAACCGTCATGACGCCCTCCGCGTGCACTGAGTGGAAGCCCGGAAGCCCAGGATGTGATGGATGGTGAGGGGGTGCCGCCGGATCGCGGATGGAATTGCAGATCGCTCAGGTGGCCCGGGAGTTGAGCGCGGCCAGCAACGGCGGCCCGGACAAGCGTAAGCAGAACGTCTACCACGCACACGCCAGGTACAACGCATACGGAGCACGTCGCCCCAGCTCTCACGCTCAAGCCGGACCGGCCGAATCAGCGCCAGGCACAATGACACCAGCCGCACCGCACATGCGTGACCGCTTCACACGAAAGGCGAGAAATGCCGGTTTTCCAAGAAGTAAGCAAAAACCGTCGGTCCGCCACCTAAACCCCCTGGCCACGAAGG # Right flank : CGCAGCGGGCCAGGTCTCGGTCGTGGCGGAAGGCGCCGCCGCGGGTGATGTGGGGGTCGAAGGCCCAGTCCTCGGTCTCCGGGACCCTGGCGGGCGCGCCCGGGTACGGGGCGTAGAGCGTGGACGTCCACTCGTCGGCGTTGCCCGCCATGTCCAGGACGCCGAACGGGCTCGCGCCCTCCGGGAACGAGCCGACCGGCGTCGTCGTGCCGACGCCCAGGTCCACCAGGTTGGCCAGGCCCGTGCGGTACTCCTCACCCCACGGGAACTCCCTGCCGTCGTCGCCGCGTGCGGCACGTTCCCACTCGTCCTCGGTGGGCAGGCGTACGGGGAGTTCGAGGCGTGCTCCGAGCCAGCGGCAGTACGCCGTCGCCTCCTCCCAGGTGACGCCGATGGCCGGGTGGTCCGGCGCCCCCTGCGGTGCCGGTCGCCCGGTGGCCGCCGCGAAACGGGCCCACTGCTCGACCGTGACCTGCGTACGGGCGATCCGGAACGCCGGT # Questionable array : NO Score: 3.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-1.79, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4671546-4669808 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020570.1 Streptomyces violaceoruber strain S21 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 4671545 30 96.7 31 .............................T TCTACGTCAAGTGCTCGCCGGGCGGCATCCA 4671484 30 96.7 31 .............................C CGGCGGGACGCCACGGACACGTCATCCATGG 4671423 30 96.7 25 ............................G. CGGCGTCGTCCGCCGCGCCCTCGGC 4671368 30 96.7 31 .............................A GGGCCGGGACGATGCCGCACGCCATGACGAT 4671307 30 100.0 31 .............................. CGCCCTCGGTGAAGATGACGAGATCGGGAGT 4671246 29 93.3 31 .....-.......................T GCTTGAGCAGCGACACCAGGACGGACGCGGA 4671186 30 93.3 31 ............................TC GCGTTCCGCGATACGCACGCCCAGCAGGATG 4671125 28 93.3 30 ................--............ CGCCTGACGGACGAACGGGGCGGGTGACCA 4671067 30 96.7 31 .............................T GGCCCGGGGGCGGGGCACCCGGTGACCGCCT 4671006 30 100.0 31 .............................. GGTGACGGGTGAGCAGAGCCCGCTCCTCAAC 4670945 30 96.7 31 .............................T TGCTTTTCGCCGCTGCCTTGCCGGTCTGTGT 4670884 30 100.0 31 .............................. GATCGTGCCCGGCCCCACCTGGCCGGAGGCG 4670823 30 93.3 31 ............................AC GCTGACCACGAGTCAGATCCCGCTGGACACG 4670762 30 100.0 31 .............................. CATAGCTCTTCCAGTCGTGGTACCCCCAGTC 4670701 30 100.0 31 .............................. GCGCCCTGCCGTACGAGGCGACCGTTCTGCG 4670640 30 100.0 31 .............................. AGATGCCCGAGGGCGACCGAGACGTACCCGA 4670579 30 96.7 31 .............................C AAGCCGACCGCACCCCAGCAGAAGCCGAAGA 4670518 30 96.7 31 .............................C AGGTGACGGCCCGCTTGTAGCGGCGCGGCGG 4670457 30 96.7 31 .............................T GGGCGTGCACGTCGGCGAGGTTGTACTTCTT 4670396 30 96.7 31 .............................A GCTGGACCTCCTACAAGCGCGACCCCGCCCT 4670335 30 96.7 31 .............................C TGCGCAGCGCGTCCGCCGGTGTATCCAGCGG 4670274 30 100.0 41 .............................. CGGGCTGCGGGTTGTACCGGGTACTGCGGCCCCGCAGCGTG 4670203 30 96.7 31 .............................T CGCCGGCCTGCTTTCCGTTCCCGGACTGCGT 4670142 30 93.3 31 .........A...................A TCAGCGGCAGGGACTCGGGCAGGGTGTACGT 4670081 30 93.3 31 ............................TA AGCTCGCGCAGCTCCGCCGACATGATCGGGT 4670020 30 96.7 31 .............................T CGGCTCCCTGCCGAACGCGAACGCGGCCTCG 4669959 30 100.0 31 .............................. CCGTACGCGCCTTCCAGCGCGCACAGGGGTG 4669898 29 90.0 31 ............AT...........-.... ACGACAGTGGTCGGCGCATCTGTACGACGGT 4669838 30 80.0 0 ...........C.GG...C..C.......A | T [4669823] ========== ====== ====== ====== ============================== ========================================= ================== 29 30 96.1 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : ACCGACAAAATCCCACCCCACATCCCCACGACGACAGAAGCCCGATCGCCGAGCACCGCCAAACCCACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCGCCGGAAGCCCTGCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCACCGGCAGCAACGACACCACACCCACCCCAGACGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAACCCGCCTAACCCCCAGGCGAGGGGTCGTTGTTGGGCAGGACGGCCACACCGCGCCCCGGGACCGACTCCACGGAAGGCAGAGCCACGCCCCTTCCACCGAAGCCGGGACAATGAGACCTGTGGTGCGCAGAATGGCATCAGCCGAACCACACACGTGACCACTTTGCCCCAGAAGGTGAGATATGCCGGTTTCCCAACAACATGGCAAAACCCGCCTCCCCGTCACCTAAACCCCCAAGTCACGAAGG # Right flank : CGGATGTCCGCGGTGCCGCTTCGGCCGTCCCGTGTTCCGTAGCCGCCCCCGGGCACTCGGCGCGGCACCGGGCCGCCCCGCCCACCCCACCCCGCTCTCCCAGTGCCCTACGGAGAGGCTCCCCGACCGCTCAGCCCAGCCCCTCCTCCACCAGGGTCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGCCCAGGAGTTCGACCGCGATGCGGTGGGTCTCGCGGCCCACCCGCGCTTCCAGTTCCGTGACGCGCGGGCGGAGCTGAGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGCGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAAGGCCGCGACCACCTCCGCGCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCC # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 4676440-4675965 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020570.1 Streptomyces violaceoruber strain S21 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4676439 29 100.0 32 ............................. CTCCAGCGGATGGGCCTGAACCCGATCGAGGA 4676378 29 100.0 32 ............................. AGGCCGACCAGCGGGCGGGTCTCCAGCGCGAG 4676317 29 100.0 32 ............................. TCCAGCCCGGAGAACGTCTCGGGCATCCCCTT 4676256 29 96.6 31 ....................A........ CAGCCAGCCCACGATGCCTATCTCCGGTGGG 4676196 29 96.6 0 .......T..................... - Deletion [4676168] 4676167 21 69.0 32 --------....G................ GCCGACGGGCCGCCGGGCGGGACGAATCAGTT 4676114 29 93.1 32 ...G.....................G... GATCTCTGGGGGAGCGTCAAGCGCACCGCATC 4676053 29 93.1 33 .....T..............A........ CACGGGCTCATCCCGTCCGGCATCCTCGCGGCG 4675991 27 82.8 0 ............--........C.CC... | ========== ====== ====== ====== ============================= ================================= ================== 9 29 92.4 28 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GCGTGATGGCTCCTGTGGCGGACACGGGGACGGCCGACGACCGGGGAGGGGAGAGCCCTGCGCGAGCGAGCGCCGGGCGGTGGCCGCGCGATGACCGCGAGTCCCCCGGCTGCCGGGTGGCCGAAGTTGACGCGTCGAAGTCTCGCCGCGCACCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCGAGCCCTGCCCGAAAGTGCCACACCCCGCCGACCGACACCCCTCGGAAGTGCTACCGCCGGGCATCCTTCTTCCGACCGATCGCGGCGGCTGGGGGCGGGGGCCGGGGCCGGGGGGCTGCCGCCAACAGTCCGGGGCACGACCGAAGTACGGGACAGGGCGCTGGGTGAACTGGCAGGCTGGGAGGCAGATCCCCGGGGGTGCTGACCTCGGCCTACCTGGCAGCCCATTCGAAACTTAAGGCCACATATGCCCGACTCTCAAGAAGTTCCCAAAAACGACCCCTCGGCCGGATAAACCCGCAGGCCACGAAGG # Right flank : TCCACACCCCCGCCCGACTCCAGCCAGCCGGGCCCCCTCCCCCATCGCGATGCGTACACCCACGGCCCCCGTCCACCCGGCAACACCGCAGGTCGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCGCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCGTGCTGTGGCCGGCCGACGAACCCTGGCCGGTCTGCACCGAACCGCACAAGCGCAGCAGCGGATACCGCATCGCGGACGTACGACGCGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAACGGGACCTGCTCAAAGAACTGGGCCGCAGGCACCGTCAGCGCGAGATCGCCGACACCGATCCGATCCCGCTGGTCGTCCTGGCCCAGTTGTACCGGCGGGACGTC # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:-0.38, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //