Array 1 1145294-1146054 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051171.1 Ralstonia solanacearum strain RUN2279 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1145294 29 100.0 32 ............................. ACGCCAGCGGCCGCCCGGTTTTCGTGCCGGGC 1145355 29 100.0 32 ............................. CGCATTCCGGAGAAATATCTGGACGACGTTAC 1145416 29 100.0 32 ............................. CCGGTCACGATCGACCATCCCATGGACAGTGT 1145477 29 100.0 32 ............................. TTAAAGGTGGTGATCCAACGGAAGATGCGCGA 1145538 29 100.0 32 ............................. AACGCCATCACCTCCGCAGCGCAGGGCGTGGT 1145599 29 100.0 32 ............................. TTTGAGCCGGTAGAGATGACGTACACGAAATG 1145660 29 100.0 32 ............................. GGCATCGAGGCCGGCGATCCGGTGGGCGTGAC 1145721 29 100.0 32 ............................. GATTCCTCCGACATGACCGGCACACGCCGCGC 1145782 29 100.0 32 ............................. GCGGGATGTTCACGGCCAGCGTCTTCTTCACG 1145843 29 100.0 32 ............................. AATGGTTGATTCCGCGGAACAAGAATGCTTTA 1145904 29 100.0 32 ............................. GCTTTCTCCAGGGCGTAGTCGCCCACCAGTGC 1145965 29 100.0 32 ............................. TCGCCGGCGTTCATTACACAGCACGTCACGCT 1146026 29 93.1 0 ..............C..........C... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAATACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGCTATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCCTGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCCATCGATGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACCATCGTGCAGTACCTGCAGTTCGCGCGCGAGTTCAACAAGCTGTTCCCGGGCTTCGAGACTGATATCCACGGGCTGGTGGAGGAGGAGATCGACGGAAAGATGGGGTACTTTGTCGACTGCGTGCGGTAGGGTGTTGTCGCGAGCTTTTGTCCGGCGGTAGATCGGTAGATTTTTGTGTGCTGATTTTCCGCTTTTGGATCAAGGGGTTGCGTTAAGT # Right flank : GAGCGGCAACGATCACACCGGTGCGACGTTCGCGAGTTCCCCGCGCATGTGGGGATAGGCTACCAACCAGCCACAGTTCCCGGGCTGCCTGCAGGGGAACAAAGAAAGTCCGCGGATTAATCCCTTTCCGGCAGGGCGGGATTCCACTTGACACGCGGCCCAGTTGATGCGAACAAGAGCCGATTTGCGCCATGAGTTTGTTCGCCCACCTGAGCGTAGTTCCCGACCGAAGGCAGAACATCAACAAGAAGCACGACCTGATCGACGTGATCTTCCTCGTCTTTAGCGCCGTGCTCAGCGGTGCCACGGGCTGGAAAGCGATCGAAGTGTTTGGCGACGCGCAGCTTGATTGGCTGCGACACCATCGGGCCTTTGGCAACGGCGTGCCTCGCCGGCACTGTATCGCCAACATCGTCAAGGGCTTGGATACGGACGCATTGATGCAAGCGCTCTTCGGCTGGATCAACGAAAGACGCAAACTCGCAGGCAAGGGCACCATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1156676-1158717 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051171.1 Ralstonia solanacearum strain RUN2279 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1156676 29 96.6 32 ............................T TCGTGCATCCCCGATGCGATGATGTTCCCGGG 1156737 29 100.0 32 ............................. CCGTGGCCAGCGGGGCACGTGGATTCCGCGAT 1156798 29 100.0 32 ............................. AGAGGGAGAGCTCATTTTATCCTAAACACATC 1156859 29 100.0 32 ............................. AGTACTGCCGATTTTACACGACAAACGGGGCA 1156920 29 100.0 32 ............................. CCCTTGTTGTCACGCCACGCTGTGAAATAACC 1156981 29 100.0 32 ............................. CGTCCCCGCGACCCCGCCTGCAGTTGGTGCGC 1157042 29 100.0 32 ............................. GCGTCTACACCAAGCCGGGGCTCACCAAAGAC 1157103 29 100.0 32 ............................. ATCGACTGCCGCCTGTTCGAATGCGCGATCGG 1157164 29 100.0 32 ............................. TTCCCCGGGATCACGCAGCAGGTTGTAGACAC 1157225 29 100.0 32 ............................. TCGCGTTCAACTCGATCAATCGGCAACTGGGC 1157286 29 100.0 32 ............................. CACGCCTGTGACAATCGAATACAACGTACATT 1157347 29 100.0 32 ............................. GCATGGACAAGAACGCGTTTGCAAGCCGTCAC 1157408 29 100.0 32 ............................. CGCCGCCTCATAACAGTTGAACTCCATCTCTG 1157469 29 100.0 32 ............................. CAATGGCGAACATTTGCGACTGTAGCGCCCGA 1157530 29 100.0 32 ............................. GGGGTGGGAGAGACAGCGAAGTGCCTGGTGGT 1157591 29 100.0 32 ............................. GGACTCGGCACGCATCATGATGGCGTGGCCGA 1157652 29 100.0 32 ............................. AGCCATACGCACAGCGATCCGCAGGGCGGCAA 1157713 29 100.0 32 ............................. CGGGGCGCTCCACGCGAGTCGGGCCCGTTGCG 1157774 29 100.0 32 ............................. TCACTGGCACCACGTCCGTCGCGCTGGCGTGT 1157835 29 100.0 32 ............................. TTTCTCGCGCGCTCATCAACAATTATTTTCCG 1157896 29 96.6 32 ............................T CCGACAGTTATGAAGCGCTAGACCGGCCGCGC 1157957 29 96.6 32 ............................A GTTGGTACGGATGGCGCTGGCACCGTGACGAC 1158018 29 100.0 32 ............................. GAATTGAAATGCCCAATGTCATCGTTGCCTGC 1158079 29 100.0 32 ............................. ACCGTGCTCACGCCGGCGCAATGCGCAGAACT 1158140 29 100.0 32 ............................. GGGTTTTGGTTGATGGGCGCCCGCAAGCTGAG 1158201 29 100.0 32 ............................. GTTACCGACCGGGCTTTGGACGATATCCGGCT 1158262 29 100.0 32 ............................. TCCGCTGGGTGCAGGGCGCAGTAGTCCTGCAC 1158323 29 100.0 32 ............................. GATATGTTTGGCGGCATCGGGCCGGCGATCCG 1158384 29 100.0 32 ............................. CGCATCGGCCGCTCGCCGGACTGGGCGAGTGC 1158445 29 100.0 32 ............................. GGCATGTTGGCGATCGCTTTGCCCTTCTCGTA 1158506 29 100.0 32 ............................. CGCGATGGCTCGCCTACGGCGCAGCGCCTCAA 1158567 29 100.0 32 ............................. GAACTCGGCAATGAATTGGGGCGCCCACAAGC 1158628 29 100.0 32 ............................. TTTCGGCTGTCGCCTATTGAGCAGCGGCGGTG 1158689 28 96.6 0 .............-............... | A [1158700] ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.6 32 GTGTTCCCCGCGAGTGCGGGGATGAACCG # Left flank : CCGCATCATCCCCGCCATCGAGGAGGTGCTGGCTGCGGGTGGCATCTCGCCTCCGGAGGCACCCCCGGAATCCGTGCCTCCCGCCATTCCCAACGCCGAGCAGCTCGGCGATGCCGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTGGTCACAGAAGATGTTCCCCCGCGCTTGCGTGGGCGACTCGCCATCTGGCTGCTGGAGGTGCGCGCCGGTGTGTACATCGGCGACGTCTCCCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGTAACGTCGTCATGGCCTGGGCCAGCCCGCATGAATCGGGCTATGAATTCCAGACACTGGGGGCCAACCGCCGGCTTCCAGTCGAATTCGACGGGCTGCAGCTCGTAGCCTTTCAGCCGGCGGACAAACCTGTTCTTTGACAACGCGAACTATCGGTACTTTTTAGGTGGTGGAATTTTCGATTCATAATCAAAGGGTTGGGTTAAGT # Right flank : GAATTGATAACGACCAACGGCTGCGCTGACAAGCGTAGTTCTCTTGGGGAAATTATTCCAGTCTGCTAGAATATTTCCGACTATCAGGAATATTTCCTGCAAGGCTGAATGGTTAGGAGGTTCTATGTTGACTGTGGGCAAAGCGGTTTCCGCGGCCGAAGTGGCGTTCATGGCCAACCTGAGCGACAAGGAAATTAACCGCATGGTCGATGAAGACGTGCTGCCATCTGCACTCGTGGTGCGCGACCATGGCCGGCGTTTCGCGCCGCTGGCAGCCCCTTTTGCGACGTTCTATTTCAGGTCGAGCGAGGAACTGACGCGCGCCGCGCGGGTCCGCGTCATCGCGACGCTGACCGAACGGCTGCTCGAGCGTCCGGACCGGGACGCGTTTCTGTTTCTCAGTACCCGTGTGACAAAGGCGAAGTTTGACTGGTCGGTATCGCATTCGGACGTCACGGTGTTTCTGGCCACATACGTGCGGGAAGCAGCGGAGCGCGCGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //