Array 1 167794-169385 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJE01000008.1 Pectobacterium brasiliense strain Y64 Y64.scaffold8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 167794 28 100.0 32 ............................ AGGCATTGATACAGCAACCGTTACCTGATCCC 167854 28 100.0 32 ............................ TATGTCGGTGAAAATGGAATTCAGGCTGGCGT 167914 28 100.0 32 ............................ ACTCGAACGCGGCGCGGCATACCACCGTTTAT 167974 28 100.0 32 ............................ ATTCCGGCTGGATTACGGTGTATCACGTTAAT 168034 28 100.0 32 ............................ ACGCCAGATACGGCAGCAGGTGTGCCGGGCAG 168094 28 100.0 32 ............................ ACCAGCGCATGATGTTGCTTATCAACCTGACT 168154 28 100.0 32 ............................ ATCATCACCGTGGATAGCGGCGATAGGGCAGC 168214 28 100.0 32 ............................ AATACCTCAAGACGCTGACGGCCGATCAGGTC 168274 28 100.0 32 ............................ GACGAGCCTAACGCATGGCTGAAATATGTAGG 168334 28 100.0 32 ............................ AGCACCCTCACCAGCGCCGAAAGGGAACGTCT 168394 28 100.0 32 ............................ GGACAGGATGGCAACTTTAGCCAACGCCCCCC 168454 28 100.0 32 ............................ GCCTGAATAAGCTTTAACTCCGGTGAGAGTGT 168514 28 96.4 33 ........T................... CCTGAGCGCATGCCGCAAGAGTTCGTCGATAAA 168575 28 96.4 32 A........................... GGCTTACCGTCAACGCGAGTTACGCCGCCGCA 168635 28 92.9 32 A..............A............ GCCCGCGACGAGCCCCAGCTCGCTGCTGAATT 168695 28 100.0 32 ............................ CAGGTACAGACGGAAGAAGAAGCGATAAAGGC 168755 28 100.0 32 ............................ ACAACGCGAAATTAAACGCGATACCCGCTGAC 168815 28 100.0 32 ............................ GCAAGGGTAGTAACGGCAAGACCAGATGGAAC 168875 28 100.0 32 ............................ GATGTTTATGACGGCGAATGGCTGGTAGAGAT 168935 28 100.0 32 ............................ GCTGGAGTTCGCCACTGAGTGGGAGGCCGAGA 168995 28 100.0 32 ............................ TGCTCGTCCTGAGATGCCGCAAGACGCGATTC 169055 28 100.0 32 ............................ AACGCATCCCGCTGCCGTTCGATTTCTGCTAC 169115 28 100.0 32 ............................ GTGGCGAGTCCTAACGTCGAGTTTTACGAAAT 169175 28 92.9 33 ...........C.....T.......... GCCAAGCGGTGGCGATGAGCCGTTTGTGAACAT 169236 28 100.0 32 ............................ ATAATTGGTGGTATTGGACGGATATGATGGCA GT [169246] 169298 28 100.0 32 ............................ TAGGACCTATTGACTCTTAATCAATTGGTCGC 169358 28 82.1 0 ...........A.C.A....T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.5 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATCCTGACGCTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGCTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGATTGTATATCCATAGCATATGCAGATACCTGGCATAGGCCTATCGTCAATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCTTCGTAACTCATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : AATAAAACGCTCCTAAAGTCAGGAATAAAAAACTCATAGGCAATGCTGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAGCTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCCGTCGGGCTGGAATGTCTGGGGTTGATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAAATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 176978-175749 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJE01000008.1 Pectobacterium brasiliense strain Y64 Y64.scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 176977 28 100.0 32 ............................ GATCTCTTCCGCTGGCAGGCCGTATTCAACGA 176917 28 100.0 32 ............................ ATTCCCCCCATAAGGCGCGAATCTGTGAGGCA 176857 28 100.0 32 ............................ CCTGAACCCGGCCACTGAGCCGGGTTTTTTGT 176797 28 100.0 32 ............................ TCAGCGCAAGGTACGGACACAATCGAGGTTGC 176737 28 100.0 32 ............................ TGGAATATTTCGCCCATCGCACGCTGGCTGTC 176677 28 100.0 32 ............................ AGCTGTCGCTGGTCTCCATTGCGGTCATATTG 176617 28 100.0 33 ............................ ATCCCAGCGACTGCCGGGACGTTCGTGATCGGC 176556 28 100.0 32 ............................ CGCTCGCGCTCGATCCGCTGCCGTTCTGTGGT 176496 28 100.0 32 ............................ AGCACCCAATTGATTGATGAGGCTATGACGTT 176436 28 100.0 32 ............................ TTTATCGTCGGTAGCCAGTGAGTAAATAGCTT 176376 28 100.0 32 ............................ TGAACAGCGAGCCAGATGAGCGACTCAATGCG 176316 28 100.0 32 ............................ GTATCAACCTCGATCTGACGCTTGGATGCACC 176256 28 100.0 32 ............................ ACACCGGATGAGGCGTTCCAGGTATCGAATAA 176196 28 100.0 32 ............................ AGTTCCGCAGAGAGAATTGCCGCCATTGCCAC 176136 28 100.0 32 ............................ TTCTGCAACTTCGATCTCTTTCGCTTCTTCCC 176076 28 100.0 32 ............................ GCGCCGCAATGCTCAAAGACAAGCCTGTAACA 176016 28 100.0 32 ............................ GGCCTCTACCCGACAACTGCCCGCACTGTGCA 175956 28 100.0 32 ............................ ATGATCTACCGCCAGAATTAATGTGAAAATGA 175896 28 100.0 32 ............................ ACTAAAGCCGATTCTGAATTTAAGTTCATTCA 175836 28 100.0 32 ............................ AGTCGTCGTGCAGATGACGAGAACCAGCGCAA 175776 28 78.6 0 .............C......T...TCCG | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACAGAGGTGCCGGTCCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACCATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACAAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : CGACATTAAGTGCTGCTGTCTGGCTATTATCGAGGTAGCACTATCGTCAGTATTTGATGCGTTATCGTCTTTAAATAACGTATTTTTATTCCCCTTTCTCGTAACATTTTTAAGTAAAGAGTTTCTTTGTGAAGAATGAAAAATTGCGGATTGAACGTTATTAATATTTAAAAATCATCATTTTTCCGTTAAAGTGCCTTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTACAGACGTTATGCACCCCGAATCCCAATCAATCGTGGAAAACGGCCATATTTGGTTGTACCGATCCTGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 185551-186177 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJE01000008.1 Pectobacterium brasiliense strain Y64 Y64.scaffold8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 185551 28 100.0 32 ............................ AGAGTAGGTCTGAACCCAGTTGATTCAACGAT 185611 28 100.0 32 ............................ AATCCCAAGTCTGCCGCCGAACAAGGTCAAGA 185671 28 100.0 32 ............................ ATCAAAATTGCCGAAGGCCAGTGGTATCGTAC 185731 28 100.0 32 ............................ GACTTTCGCCAGTTACCGTTCGCCGACGAGTC 185791 28 100.0 32 ............................ ATGGTTGGCTCTACGTCGCAGAGGGGCATCAA 185851 28 100.0 32 ............................ AGATTCGCGGCACGGACTTCGCGATCAAGCAG 185911 28 100.0 32 ............................ GTTACCGCTGATCCTGCGCAACTGCGCTGTGA 185971 28 96.4 32 .............C.............. CGACGCGTACAGCGACATAGAAACCAGAATCT 186031 28 96.4 32 ...........C................ TGACCAGCGTTTTTGCGCTTTCGGATCCCCAA 186091 28 96.4 32 ...........C................ CGTGAGGTGCCACTTTGTTTGATGCTCCAGAC 186151 27 89.3 0 .............C.........-..T. | ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCCACGCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTACGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTGCGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAGGCGGAAGCCGCAGCACGAATTCCTGATGCGGTGGAAAAACGCAGCGCCCTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTATAGAACATGGTCCGCTACAGAATGCTCCTAGCGCAGGACGCTTTTCCTCCTACGGCTTAAGCGCAGAAGCCACCGTACCTTGGTTCTGACCCTTTTTTGGCGACCATCTGCAAGTCATTGATTTTTAATTGCGGCTGGTCGCCCTAATAAAAAAGGGGTTTTCGAGATAAAATGAACATTCTCTTTAACAATCTGGTGGTTAGCGTAAAAACCTAACA # Right flank : ACTATCGAAATGCGTCGCTGGCGCGACGCATTCTTGAGGACTATTCCCCGTTGAGGGTGACAACCAGCGAGCGGCTGCCACCGTGGTTGCGGTGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCATTAGACTGTTGCCCAGCAGGCTACCTTTTAGGTGCGCCGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGCTCATCCTCCGGCACTAAGCGATTAAAAAAACTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACATTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCCGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //