Array 1 92221-93089 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQUZ01000010.1 Lampropedia hyalina DSM 16112, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 92221 28 100.0 32 ............................ CAGTTTGATGCCAGCTCCCACCACCGTAATAC 92281 28 100.0 32 ............................ TGCACGAAAGGACTGCACGTTATGACTACTGC 92341 28 100.0 32 ............................ ATGACAGACGGCTGTTCCTGCACCTGTGTGCG 92401 28 100.0 32 ............................ ACTGGGACCGATTCTTTTATTGAGGGAATGAC 92461 28 100.0 32 ............................ TGGACAATGCGACCGGCGTTGCCGATGGCCTG 92521 28 100.0 32 ............................ TTACACGCGCCGAAACCGAGCTGCTCAAAATC 92581 28 100.0 32 ............................ GTGCTCCTCGCAATGTCGGGCACGTTCGCCCA 92641 28 100.0 32 ............................ TCGACACTGGCATCGCAGGACTACAAAAGCAT 92701 28 100.0 32 ............................ TAACGCTGGCGTAACCGGCGCGACGCTTGCGG 92761 28 100.0 32 ............................ ATGCTGACATCGAGCAGCGTGGATACCAGGTC 92821 28 100.0 32 ............................ CCGATGAGTATCAAGCTCATGACCTTGGCGCG 92881 28 100.0 32 ............................ GACGACACTGACGATGATGGGCCGCAGGGTCA 92941 28 100.0 33 ............................ GACGCAATGACCGCGCATGTACATCACCGCTAT 93002 28 100.0 32 ............................ AGCGCACCTTCGGCCAGCGCCCTGTACTCGCC 93062 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 100.0 32 GTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGT # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTGACGTTCACTGCCGAATAGGCAGCTTAGAAAACAAGCCGGAAGCCTACTACCACCCGACGTTCGTTCACTGCCGAATAGGCAGCTTAGAAACTCGCGCCGTTCGATCTCGGCTATTGCCGATTGTTCACTGCCGAATAGGCAGCTTAGAAAAACGCTCATACATCGAGGCCCTGACCCGACTGGTTCACTGCCGAATAGGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [6.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 95602-96050 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQUZ01000010.1 Lampropedia hyalina DSM 16112, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 95602 28 100.0 32 ............................ TGTTAGAATTTATCGAACGTAACTAAAGGAGT 95662 28 100.0 33 ............................ AAAGACGCCCGGATGCGCAATCATGTACGCGAT 95723 28 100.0 32 ............................ TGCCCGATGGAGGCGAGCACGGCATTGATCTC 95783 28 100.0 32 ............................ CTGACCGGTTGCAGCCATCTGCCCGACCATCC 95843 28 100.0 32 ............................ ACCACCAGCACGGCAAACAATGCGCAGTCGGC 95903 28 100.0 32 ............................ ATATCGAGGTTGGGAACCAAACCATTTGGAAC 95963 28 100.0 32 ............................ AAGGATACCGCCGAAGCAATGGCCCTTGCTGC 96023 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 100.0 32 GTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAA # Right flank : TATTTGGATTTCGAAGGCCGACGGCTTTACCGGTTCACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2-1288 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQUZ01000025.1 Lampropedia hyalina DSM 16112, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2 28 100.0 32 ............................ AGTGGCTCGACGACATCATCCAGTGGGCCTAC 62 28 100.0 31 ............................ TCCCCGTCGCCGTCGCCGTCGCCGTTGTTGC 121 28 100.0 32 ............................ GCCACCACCAGGCGCACCGGCACCGCCACCAC 181 28 100.0 32 ............................ TATTCCCAACGTATAACAGCGGATCATGTCCA 241 28 100.0 32 ............................ TCATTGAGCAAGAGGCATTCGGCATCCTGCAT 301 28 100.0 32 ............................ TCTCCTCGGTGGCCTCCTGTTGTCCCTCGTCT 361 28 100.0 32 ............................ TATTCTGGAGTTGTCAAAACACGGTAAACGAG 421 28 100.0 32 ............................ TCAGTGTCAGAGAGAATACGCCAGGCGGTGAG 481 28 100.0 32 ............................ ACAGCAGTGACAGCAGCGATCTTGGATGTAGC 541 28 100.0 32 ............................ TGAGCATGGACGAAGAGCGGAGCAACCGCAAC 601 28 100.0 32 ............................ ATCCTGACAGTCCACGATTTGCCGAATATGGC 661 28 100.0 32 ............................ ACCAGCTTTTCTCCCAGTGCAGGCGATCGCTC 721 28 100.0 32 ............................ ATCAAAATCACCGGCCTCGGCCCCGTTGAAAT 781 28 100.0 32 ............................ CAACGAGAGACGGTGTCAGTTGCACCGCGAAT 841 28 100.0 32 ............................ GACCAGGGCGATCAGAGCAAGCACGGCCAGGC 901 28 100.0 32 ............................ ATAACGGTCGTTTTAAAATCAAACCTGATATT 961 28 100.0 32 ............................ AGCTCAACAACCTGACCGACACCGCTGCCGAG 1021 28 100.0 32 ............................ TGGGAGATAGGGAGGACAAAACTGCGGCCAAA 1081 28 100.0 32 ............................ AGTGCGCCCGCGGGGTATACAAAACGGTTTTA 1141 28 100.0 32 ............................ TGGTCATTGTGAGTTTGCTCGTTGGTGCTCGC 1201 28 100.0 32 ............................ CAGCCAAAACGCCGGGATTTGCGTTTCGAGCG 1261 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 22 28 100.0 32 GTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CG # Right flank : ACAATAAAATCGATTGACAGGTCGATGCCGCCTGTTCACTGCCGAATAGGCAGCTTAGAAANNNNNNNNNNACGTTCACTGCCGAATAGGCAGCTTAGAAACCGTCTGTTATCGGGTCTGCTCTCGTCCAGATGTTCACTGCCGAATAGGCAGCTTAGAAAGCATTTGATAGTTCCCCATTGTTTACGGATAGTGTTCACTGCCGAATAGGCAGCTTAGAAACAGTTTGATGCCAGCTCCCACCACCGTAATACGTTCACTGCCGAATAGGCAGCTTAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3329-4919 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQUZ01000025.1 Lampropedia hyalina DSM 16112, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3329 28 100.0 32 ............................ TGGATAGAGGTGTGCAATTCTCCGATTTTGGT 3389 28 100.0 32 ............................ GGCGAAGTCGAGGATTAGGCAGTGGTCTTTGT 3449 28 100.0 33 ............................ TGTAGTCAGAAATCAACCAGGAATTCCGAATAC 3510 28 100.0 32 ............................ TTCGCGGGCACGTAGGGTTCCCAGTAAGTGAC 3570 28 100.0 32 ............................ AGCCCAAAACTCGCAAGTGCGGGCTAGGATTT 3630 28 100.0 32 ............................ GACTACCTGACCCACCCCGCGCACCCTTTTGA 3690 28 100.0 32 ............................ ATCGAGTCATTGACGATGGACTGGCTGCGCTC 3750 28 100.0 33 ............................ ACAAATAATGCTTGCGTTGTTTTGAAAAAGCAC 3811 28 100.0 32 ............................ GGTGATACGCTCACGCACTGCACGCAGATGCC 3871 28 100.0 32 ............................ TCGAAGGTGTAAAAGGTTGCTTCGCGCTCCCA 3931 28 100.0 32 ............................ GCATGTGCCGCGCCACGCGGGCTAACAGGTCG 3991 28 100.0 32 ............................ GCTGCCCAGGAGCGGGCGACGCTCCAGCGCAA 4051 28 100.0 32 ............................ AGCCAGTCTGGCCAGATCACCGCCCTCAACAA 4111 28 100.0 32 ............................ CATGCCAGCAAACCATTGCCGCCCAGGCTCAA 4171 28 100.0 32 ............................ GTCGTCAAATTCGCGGGCAGCCCAGCGGCTGG 4231 28 100.0 32 ............................ TACTACCACCCGACATTTGAGTATCTCGCTAA 4291 28 100.0 32 ............................ TTCCGCCGGGTAGCAGTATTCAGGCGGGCCGC 4351 28 100.0 32 ............................ AAAACCAAGGAGATTCAAAATGACCCAAGCAA 4411 28 100.0 32 ............................ TTTGCAAGTTGTTTTGTTTCGTCGTTGTCTAT 4471 28 100.0 32 ............................ GACACCGCTGCCGAGGCCCTCGCCCGCCAGCG 4531 28 100.0 32 ............................ TCCCCGGCCTGAAGGCCGGGGTTTCTCGGGAG 4591 28 100.0 33 ............................ TGCCCGCCTGATGGCGGGTACGTCATGGAATAT 4652 28 100.0 32 ............................ AGCGTCGCGGTCATTTGAGCTGTGAGCGCGTC 4712 28 100.0 32 ............................ GTCAGAATGAAACGACTCAAGCGGTTTCCAAT 4772 28 100.0 32 ............................ TGGTCAAGTTCGGCAAGGACGACCAGGCTTAC 4832 28 100.0 32 ............................ AGGTCGGTGCGACCCACCAAAGTGGTGAACGC 4892 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 100.0 32 GTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT # Right flank : AAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 6274-9064 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQUZ01000025.1 Lampropedia hyalina DSM 16112, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================= ================== 6274 28 100.0 32 ............................ TTGATGTAGATGTCCTGGGCTACCCCTTTCGG 6334 28 100.0 32 ............................ TCTCAGCGCAGCAGACGGGACTGGATGTCCCG 6394 28 100.0 32 ............................ AGCAACTCCGGCGCAGCGGCAATCAGGCGAGC 6454 28 100.0 32 ............................ TTGCATACGATGCCAAATGTCGCGGGCAAGGT 6514 28 100.0 32 ............................ ATGAGCCCGTGCCTGCGCGCCCCGAGATGCCT 6574 28 100.0 32 ............................ ATTGAACAGGCTGCGCCGGGCGAAGACTTGTC 6634 28 100.0 32 ............................ AGGCGTACTGGAGCATCTCCCAGAACCGTTGC 6694 28 100.0 32 ............................ ACACTGCCGCGCGACGAAAAGAAGCTTGATGA 6754 28 100.0 32 ............................ TGGATGCAGTGTCACTGTACCAGCCGTGTCCA 6814 28 100.0 32 ............................ TGTACTTGCAAGACGCATATTATTTTCGAACG 6874 28 100.0 32 ............................ GCGCACTATTTGACGCCGTGCAGGCGGCCCAG 6934 28 100.0 32 ............................ GAAGGCCGCTGAACTGAAAGCCCTTACTTCGA 6994 28 100.0 32 ............................ GAGACGGAGCGGCAGCAGCGCGAGCAGGCCGT 7054 28 100.0 32 ............................ TCTCGGGTGAGAGGCTCGCCGGTTTCAGGGTC 7114 28 100.0 32 ............................ ATACCGAACGGCGGCAGTCGCGGCGACGACGA 7174 28 100.0 32 ............................ GACACCGCCGCGCAGGCCCTGACCCGGCAGCG 7234 28 100.0 32 ............................ ATGCGCAGGTCGTTTTGCAGCTTCTCCTCAAT 7294 28 100.0 32 ............................ AATGCACTTGCATCCGCTTTGGTGGCTACCTG 7354 28 100.0 32 ............................ GAGATCGACGAAATCCGTCAGCACATCGAGAA 7414 28 100.0 32 ............................ AACCCAAGAGAGATGCGCCCTCGGTAAGTTGG 7474 28 100.0 32 ............................ GCAACGACCGCCGCAACGTGCGCGGTTGCCGT 7534 28 100.0 32 ............................ AAACGCTTGGCAGCCACCGGCGCACTGCTACC 7594 28 100.0 32 ............................ ATCAGCCCGCCCAGCGACTGGCCGATGCTCTG 7654 28 100.0 32 ............................ TCGCCCTTGCCGCCCGCCAGCGTTGATGCCGC 7714 28 100.0 32 ............................ GAGGAANNNNNNNNNNNNNNNNNNNNNNNNNG 7774 28 100.0 32 ............................ TCGCCCTTGCCGCCCGCCAGCGTTGATGCCGC 7834 28 100.0 32 ............................ GAGGAAATGGAATGCCTGCGCTACGCTGTTCT 7894 28 100.0 32 ............................ GACGATCACAATGGCCAATGCAGTGATTTTGG 7954 28 100.0 32 ............................ ATGTACGGTTTAGAAATGATAAATTCCATACA 8014 28 100.0 32 ............................ AGATGCGGCCGCCCAGGACGTTGTGGCCGAGC 8074 28 100.0 32 ............................ ACAGCGGCCACGCGGACGCCCTTGTCCTTGCC 8134 28 100.0 32 ............................ TGACCGTCGATAATACGCAGAGACATTGACAA 8194 28 100.0 32 ............................ AACAAAAAACATTAACGCCCTTCGTCCTGGAC 8254 28 100.0 89 ............................ GCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAGCC 8371 28 100.0 32 ............................ TCAAGACGTTTTTTGAACACCTTCAACTGGTC 8431 28 100.0 32 ............................ AGTCAGATCGCTTGTGGGGTCATACGCCATAG 8491 28 100.0 32 ............................ TGAATCACCGTTTCCGCTTCGGCTTGTGAAAT 8551 28 100.0 32 ............................ AACAATGTGCTGATGGATTATCAGACGACTGC 8611 28 100.0 32 ............................ CAGCATGGCAGCGTCATCTTGGTGATTGCACT 8671 28 100.0 32 ............................ AATACGCCGATGGCGAAAGCCCACTGTAAAAA 8731 28 100.0 32 ............................ ATAAATACGGACGCCTTTGATAAAAGCGGAAG 8791 28 100.0 32 ............................ ATCGTCATAAGATGCGGCTGGCAATGTAATTC 8851 28 100.0 32 ............................ GAAGAACAGCCGATGGTATGCGCGTGGGACGT 8911 28 100.0 32 ............................ CTACGGGGAAAAAGCCGCGGTTAATTCTGCGC 8971 28 96.4 40 .........................G.. TGGTCGCCCCAGATTCCCAGATTTCGAGCAGCTCTTTTTC 9039 26 85.7 0 ......C..............--....G | ========== ====== ====== ====== ============================ ========================================================================================= ================== 46 28 99.6 33 GTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCGGTTCACTGCCGAATAGGCAGCTTAGAAAGCTTAGTAACTTCGTCGTCGTCAAAAGTAGAA # Right flank : GCTGCAAAGATAAATGAAAGAATCCTCAACAACTTTTACTGCCGTACGGTGGTAACTCAATGCGCTTCAGCCTCACCCAGTTGCGATTGCATGTAGTTTTCCGGGCCGATTTTCTGGATCAGGGCCAGTTGTGTATCGAGGTAATCGATGCGTTCCTCGGTTTCTTCCAGCAGGCGGCGCAAGGTGTCACGAGAGACGTAGTCGAGCACTTCTTCGCAGGCGATGATGCCGTCGCGCAGGTTTTTCTGCGATTCATATTCCAGTGCCAGATCGCATTCCAGCAGTTCTTCCACGGTTTCGCCGATGCGCAGTTTGCCCAGGTCTTGCAGGTTGGGCAGGCCGTCGAGGATGAAGACTCGCTCCATCAGGCGGTCGGTGTACTTCATGGCGTGGATGGATGCCTTGTATTCTTTTTTGCCCAGCTCGGAAAAGCCCCAGTGTTCCAGCATCCGGTAATGCACGAAATACTGGTTGATGGCTGTCAGCTCGATCTTGAGCTG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //