Array 1 1348319-1349786 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009786.1 Yersinia pseudotuberculosis strain 1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1348319 28 100.0 32 ............................ AGTAGCCGGCGCAGCGTGACCAGCGACGAGGA 1348379 28 100.0 32 ............................ AGAATGATGAGCAGTAACGCCGGTAGATAGGT 1348439 28 100.0 32 ............................ AAGTTCGGGAAGAATGGTGACTTCTTCCAACT 1348499 28 100.0 32 ............................ CATCGTCAACGCGATCGACGGTCGCACGAAAA 1348559 28 100.0 32 ............................ AGATAGAGCTAGTGGAACAAGGAGGGTGGTTA 1348619 28 100.0 32 ............................ TAAAAACACCGTTGTAAATAATACTTTTAGTG 1348679 28 100.0 32 ............................ ACCCCAAGTACCACCAATAGACTCCCAATATT 1348739 28 100.0 32 ............................ TGTCTCAAGAGACGAGGAAGTAAATATGCGTA 1348799 28 100.0 32 ............................ GTTAAAGATGCGCTAACGGCTATGATTCAAGT 1348859 28 100.0 32 ............................ AGCGTGCACGGCCTTGCGAGTATGGCTTGAAG 1348919 28 100.0 32 ............................ GGTAACCAGCCATTCATCGCAGAGAACTTTTG 1348979 28 100.0 32 ............................ CATCTGATATGGATATAATGGCGTTAGATAAT 1349039 28 100.0 32 ............................ TCAATGTAATCAAATAATGGTGTGGCTGTTTT 1349099 28 100.0 32 ............................ ATCCGTGTAAAGGGGCAATTAAGCCCCTATGT 1349159 28 100.0 32 ............................ AATTCGCAGACATAAAAAAGCCCACATAAGTG 1349219 28 100.0 32 ............................ TCGAAGAACTCAGCCATCTTCTTGTCTGTCAT 1349279 28 100.0 32 ............................ AGTAGAGTTGGCAGGTGATGCAACAGAGCCGT 1349339 28 100.0 32 ............................ CAACCCGCTGACCGGGAGGGGGAGACCATGAA 1349399 28 100.0 32 ............................ AGTGTACGAACAATAGAAGAGATTAATTTCAT 1349459 28 100.0 32 ............................ GATACAATCATCCTATTTGTCCTATCCAGAAT 1349519 28 100.0 32 ............................ CTTGGAATACAGATTATTGCTGGTACTGTCAA 1349579 28 100.0 32 ............................ TCCACGTTCTCTGGATCAACACGATAACTTGT 1349639 28 100.0 32 ............................ CTGACCACAAAAAACGGTTAAACAGCACTACG 1349699 28 100.0 32 ............................ GTCAACGCTTCACTCCTTGCGCGGGGTATAAC 1349759 27 89.3 0 .....................CC.-... | T [1349785] ========== ====== ====== ====== ============================ ================================ ================== 25 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCACCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : ATCTCAGCTCTCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2345205-2342777 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009786.1 Yersinia pseudotuberculosis strain 1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2345204 28 100.0 32 ............................ AAATGGAGAAACCACCCTTATTACCCGGTTGT 2345144 28 100.0 32 ............................ AGCGACAACGAAGGGCATGATGATGGCTTTGA 2345084 28 100.0 32 ............................ AGCTCAGCAATGCTGAAAGGCCCGATTGATAT 2345024 28 100.0 32 ............................ ATAATCGTATCATCATTTTCAATTAATTTGTC 2344964 28 100.0 32 ............................ CTTGGAATACAGATTATTGCTGGTACTGTCAA 2344904 28 100.0 32 ............................ AAAAAATCTGGGATATTAAACGCTGTTGCACA 2344844 28 100.0 32 ............................ CATTCAAAAGCGAGCAACAGGCCAATGCAATA 2344784 28 100.0 32 ............................ ATCGGCTGGGATGTTACTCAGGAAGCGCAGAT 2344724 28 100.0 32 ............................ TCCCGTCTATCGCCGCGCTTAACCGCCACCAG 2344664 28 100.0 32 ............................ ATAGGCATAAACTTCATCATCGAACTGTAAAA 2344604 28 100.0 32 ............................ ATCACACATAATAAAATCATTTTTAACGTACA 2344544 28 100.0 32 ............................ TATAAGTTGTGTCTTTTAAACGCTTTGAACGC 2344484 28 100.0 32 ............................ GCACCTACGCGGTCTGGTAAAGGTGTTAGTGT 2344424 28 100.0 32 ............................ TGTTGAAATACATGTTCAAGGAAATGGTTTAG 2344364 28 100.0 32 ............................ CGCCAGGCAGAATGCTCTCCGGTTCCTCACTA 2344304 28 100.0 32 ............................ TGCGGGGGTGTCGGTGCTGCCGCCTGTGGTAA 2344244 28 100.0 32 ............................ TATAAGTTGTGTCTTTTAAACGCTTTGAACGC 2344184 28 100.0 32 ............................ GCACCTACGCGGTCTGGTAAAGGTGTTAGTGT 2344124 28 100.0 32 ............................ TGTTGAAATACATGTTCAAGGAAATGGTTTAG 2344064 28 100.0 32 ............................ CGCCAGGCAGAATGCTCTCCGGTTCCTCACTA 2344004 28 100.0 32 ............................ TGCGGGGGTGTCGGTGCTGCCGCCTGTGGTAA 2343944 28 100.0 32 ............................ CGTTAGTTACCGCACGACCGGCGGTCGCAGTG 2343884 28 100.0 32 ............................ TAACTTGAACTCTTCGAAATACATTCGACCTT 2343824 28 100.0 32 ............................ ACCTGCAAATTCTTTAGCTTCAATAACATCTA 2343764 28 100.0 32 ............................ AATATATTTACGGTGGAGGTGTTGCTGAAAAT 2343704 28 100.0 32 ............................ TACCAAAGCCGGAGAATGTGGCTGTGCCACAA 2343644 28 100.0 32 ............................ TCATATCCCTCAGAATCAAAAGGTAGAAATGA 2343584 28 100.0 32 ............................ GCTGGAACCCACTGACTTACATTGATCGTAAC 2343524 28 100.0 32 ............................ ACTCAGCCACACCAACATACTTAAGCCCAAAA 2343464 28 100.0 32 ............................ ATGCCGCAACGCCACACTCAAGCTGCTCGCGC 2343404 28 100.0 32 ............................ TTGAGCGGCTCAACGCCAGCATCAAGCAAGTT 2343344 28 100.0 32 ............................ ATATAGAGAGTTTAAAAACAGTTTACCTAACG 2343284 28 100.0 32 ............................ CAGGCGGGGCGGCCCGATACTGACCCGAGAAT 2343224 28 100.0 32 ............................ ACCCCCCCATTTCTTGAAGTGCTGATAGTGGC 2343164 28 100.0 32 ............................ TTCCATTCAACCGTAACGCCCTTTATATTAAC 2343104 28 100.0 32 ............................ AACATCACATGCCGCAAAATATTCATGCGCTG 2343044 28 100.0 32 ............................ TTGCGGTAATCGCTCCACGATGGGATTTTGAA 2342984 28 100.0 32 ............................ AGACACGCTAATGACTTCTATTACTTTATTTT 2342924 28 100.0 32 ............................ CAGCAAGGAACATCGTCAGAAAAAACACTCTA 2342864 28 100.0 32 ............................ GTTACGTGGCAAGTATCCGACCCGACGCTGGG 2342804 27 85.7 0 ...................A-.A.T... | C [2342780] ========== ====== ====== ====== ============================ ================================ ================== 41 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATTGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCCGCGAGGGGGGAGACATCTTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : TTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //