Array 1 1001139-998208 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024597.1 Stygiolobus sp. KN-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 1001138 24 100.0 40 ........................ TATAGAGAAAATTATATAAAGAGGTTCTGGGGAGGCCCTA 1001074 24 100.0 40 ........................ ATTGGTATTTGCACTTTAGGGCCTATTTGTGGGTTATCTC 1001010 24 100.0 40 ........................ TATTACCTCTCTTGACAGAGAAAAAGGTTTACATAAATCG 1000946 24 100.0 40 ........................ CTCCTCTCTTTTTTTCTACTCTTCTCTCCTATTTAAGTCT 1000882 24 100.0 41 ........................ TTCCTATAACGAGAAAAGCACACCGTTCTATTACCAGATAA 1000817 24 100.0 41 ........................ AATGGATAGGTGAAGAATTACTAATAGTCAGCACGAAATAC 1000752 24 100.0 41 ........................ CTTTGCCAATTGAGCGTATAAATACAATATCCGTTTTCACA 1000687 24 100.0 40 ........................ CGCCCTAAAGGACGAGGCTTGCCCTTCGTTTTTGTCAATA 1000623 24 100.0 44 ........................ TTTTCCTTCATGTTGAAATATTTCCGTTTCAATTCCTCAAAATT 1000555 24 100.0 40 ........................ ACCCTGTATCCCCCTGCTTTCTAGCTGTCTCTTAGTCTCA 1000491 24 100.0 42 ........................ TTTGACGTAGTCGCATGGGTCTAATGTTGGCACGAGTATGCC 1000425 24 100.0 40 ........................ CTGTACATTGAGTATGTTCCATGATAAGTTATAACTTGCT 1000361 24 95.8 39 ..............A......... TTGAAATGTTGTTGTATAAAATTGTATACGGGAAACTCT 1000298 24 100.0 35 ........................ GGCTAAAGAAGAGAGGTGTTTAAAGAAAAGTGTTT 1000239 24 100.0 40 ........................ ATTCCTATGATCATCAGCCTCACCTGGACCTTTCACCTTT 1000175 24 100.0 43 ........................ TAAAGTTCTCTTTCATTCCTGACAAAATCGCATGCTGTATACT 1000108 24 100.0 40 ........................ TTATAATCATCAGGTATTATACCAATTTGTTTTTTGAAAT 1000044 24 100.0 41 ........................ ACCTACCTCCTCCTCATGATTAACCCTTTTTGGTAACTTCA 999979 24 100.0 40 ........................ TAGCTTAGTTCTGAAGAAAATCAAAGAGGAAACTGGGGAG 999915 24 100.0 43 ........................ AATTAGGCTGACTATTTCGTCCAGATGAGGTTCGAAGAGTTCA 999848 24 100.0 40 ........................ AGCCCTGCCACGTCATTAGCTAGCATTTGTGTATAACTTG 999784 24 100.0 41 ........................ TAAACACTACTTTTTCTGATGACATGAAAGAGATGCATTTC 999719 24 100.0 37 ........................ ACTTCCGCCCCACCTCGGTATATCGATACCAACTACC 999658 24 100.0 41 ........................ GAGCAATGAGAACATAATCAAACTCATGAGGGCGAACTCTA 999593 24 100.0 43 ........................ AAACATACCACGTGAAATAGTAACTTCACTAGACATAAAACCA 999526 24 100.0 43 ........................ TCAGGATTTTTAGGTGCTTCATCGTAGCGGTATAGCTGAGTAA 999459 24 100.0 38 ........................ TTAGAAGAGAAAGCACAGGTAAATGTTGATATTGATAA 999397 24 100.0 41 ........................ TACACTCACTTGTAACACAGTTAGCCAACATGTATCTTAAC 999332 24 100.0 41 ........................ AAAATGAAAATCCATATTAAAAAGGTAGAAGACGGGTTTGA 999267 24 100.0 40 ........................ TTCAAAAAAGGTAGCACCTCCTCCCTTTTGTCCACATCGA 999203 24 100.0 41 ........................ TCAATTGTACAAACATGTCATGATAGTCTTTCATTAAATCG 999138 24 100.0 37 ........................ ATGATAATATGCTAAGCAGTAGTAACGCTACCTTTCT 999077 24 100.0 42 ........................ TCATTTGCTCAATTCGGTTTCGCGGTCACTCAAGACATTTTC 999011 24 100.0 39 ........................ TCCTGTAGCCTCTTCACGAAAAGTACTATGTTAGCTCCA 998948 24 100.0 42 ........................ ACTGTAGTTTGACATTTATTTTATCACCTCTACACTTACGAA 998882 24 100.0 40 ........................ GAGTGTCTACTACGAAATGACGTTCAAATTCTCTACACAA 998818 24 100.0 41 ........................ CTGGTATGTTTGCTGACGCAGTAGGTATTATCGGTGAGCTA 998753 24 100.0 40 ........................ TCTACTTCACTTGTATAACTCCTTACTCCTATTATGTCCA 998689 24 100.0 43 ........................ TTGTTAAGGTGTTCTTTAACTTACCATAATTCTCCAATCTGAA 998622 24 100.0 40 ........................ TTACAAAAAATTTCAGCTATCAGAAACCACAGGTTTGAGC 998558 24 100.0 42 ........................ CAGTGTGAGGCTGAAAGTAGAAGAGAAAGCGGAGAAAGTTAA 998492 24 100.0 39 ........................ TATTCTTATTGTTGCGGGCATCCCGAACATTGTCGGGCT 998429 24 100.0 41 ........................ AAGGTCACTTACGGTGAAAAGGATCTTGTAAAATTAGAGGA 998364 24 100.0 42 ........................ GAAATCAGCCTTATCATGTGTTTATCCATCACATATACTCTT 998298 24 75.0 44 ........T...CA.G.C.A.... ACCCGATAAATTGCGTAAAAAATCGTTAACTAAGGTGACCCATC 998230 23 75.0 0 ..C.G...T......C.C.-.... | ========== ====== ====== ====== ======================== ============================================ ================== 46 24 98.8 41 GTTAATCCCTCATGGAATTGAAAG # Left flank : TCCTTGTGTTAAGTGCCTGTAGGAGAGGGGCTTTACCCGTGGACTGGTAGCTGCTCATATTAGCCCGATGCGTGACGGCCGCGCCTTACACATTCTGGTGCCCTGAGGGCTCTTACATCAATACCGGAGGCTATCAGCTTTTTGCAGAGTATATAACCTTATATTCTAATGGCTGTTTGGGTCCGTGTTGGCCGTCATGTGTGGGGGACATAACTTCGTCCACGCCCGTTATCGGTCGTATAGTTTATTTTTCGTAGTATTTCTATGCAATGTAGAGTATTTCGCCCTCATAATTCCCGGATTTTAGCGGGAATTACTTTCAATTTGTCAGTGAGCGGAAAAATTCTCTTTGTAAGGTACGTAAGACGTAAATCTCTTTATCAAACTCCCGAAATTTCACAGGAATGACAAAAATTCAGTCATGATAAAACTGTCAAGTATAGCAAAGCTTATATAAGAGGAAAGTTAAAATAAGAAAAGAAGTAGTATAAAAACATTCA # Right flank : GGTCTACGCTCTAAACGCCGCGCGGGGCTAGGAGTTATGTAAAGTTTTTTAAACATGGCCTCGTAAGGGAGTTATGTGGACAAGTTTCTTACGATCGCCCTTATCGCGTGCATCGTAATAGCCATACCGGCGTCGATATACTTAGTGATAAATTCCGGTCTAGTCTCGGAGAGCAGGGTCTTAACGGTACCGCTAAAGCTCCCGCTTAAGGACGTCGAGATCAGGTCCGGTTTCGCGGACGTGGTGGTCGAGGGGGGCCACGCCCCGGAAATGGCTGTAGAATACGTAGTCCAAGGGTTTTCCCTCTTTAAGCCTACCGTCAACGTCTCCTATAAGGAGGTGGACGGGAGGCTTACCTTGTACGCCGGGGTAAACAGCGGCACGTTCGACTTCGGCACCAGCGTAGTGGTCAACGTCCACTTGTACCTGCCTGCAAACGTGTCGTGCATAGAGGTCAACGACGGGGCCGGGGACGTAAAAATAGAGGGAGTGTCGGTCTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCCCTCATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 2 1013691-1008572 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024597.1 Stygiolobus sp. KN-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================== ================== 1013690 24 100.0 40 ........................ CAATCAGCATCAGTAGGTGCTTCATCATCAACTTCACTAT 1013626 24 100.0 38 ........................ AAACTACCTATCACCGAAATCATGAATAACCAATACAT 1013564 24 100.0 40 ........................ CATCACTTAAAAAGGGAAAAAAATCAATACTTCTTTGGCA 1013500 24 100.0 40 ........................ CAAGAAGTGCTGCATATCTAGCGAATGCTAACGCTACGAA 1013436 24 100.0 43 ........................ CTGACGATGAAAAGGGTATCAAACACAGCGGGCAAACGTAAGG 1013369 24 100.0 39 ........................ ACGATTTTCGCCCTCAAGATCACTTTGTCTTTAGCCATC 1013306 24 100.0 39 ........................ AGGACAAACTCAAACATCTTCCCACTACCTTAGAAAAAA 1013243 24 100.0 40 ........................ TACTTCACTACACTCCTCCCCGAAATTGTTTCGATAAAAG 1013179 24 100.0 41 ........................ GTAATTACGGCTAAGGAACTTTACCCAATAGCTTGCGGGGA 1013114 24 100.0 38 ........................ TCTACAGCGGGTGTAGAAGGAGTGTAAATCCTGTAGAA 1013052 24 100.0 40 ........................ TAAGTTTTTGTCTGTCTATTGTTACATGTTTTGGCGAAAA 1012988 24 100.0 40 ........................ CTCATGAACTGATTAAGAGCCTTCCCTTCCTTCCTTACTC 1012924 24 100.0 40 ........................ TCTTGATCTTTTGATGAAAATAGAACATGTCCCAGAATCA 1012860 24 100.0 40 ........................ TTTTCCAGTGCCTTTAATGCCCTCTCAATTACGGCTTCTT 1012796 24 100.0 40 ........................ CCATACTCCTAATTTATATAATACATCACCAGCTAGATCT 1012732 24 100.0 42 ........................ TTTCTCACATACTGTGACGCTATCATTTTCGCGTTTAACTTC 1012666 24 100.0 39 ........................ ACCCTCTCCGCCTTCGACCAACTATGGAAGGCAGAAGGG 1012603 24 100.0 39 ........................ ACCTGATTCGGTGACGGAGTGTATATCGTCACTCCCTCC 1012540 24 100.0 39 ........................ AACACCGCTAACGATCGAAACTGTTACTGCACCGACTAC 1012477 24 100.0 40 ........................ CTACGTACGAGTTTACAGAGTCTTTTAATACTTGAGAAAT 1012413 24 100.0 40 ........................ ACTAACCCGCCTCACACACCGTCATTACCCACCACCCCGT 1012349 24 100.0 41 ........................ AAACCTTTCAAGTAGTTAAAGCATTTAACAGCTTTCCTATA 1012284 24 100.0 41 ........................ TGCACACGTTCAAACTGTACTACTATAACGACATGGGGCAG 1012219 24 100.0 40 ........................ TACTACTTCACTATAACCTATAAGTAGAACACTCTTGTTT 1012155 24 100.0 43 ........................ ATAGACGGTGTGACGTAACCGTATGCCATCGCCGGTATTTCGT 1012088 24 100.0 38 ........................ CATTCAGAAACCTCATATATAATTTTTCTATATCATAT 1012026 24 100.0 41 ........................ TATCTTGTTTTTGACGAGAAAGAAGGAAAGTTCATGATCGT 1011961 24 100.0 44 ........................ TATAGTCTTTCCCTCCTATGGTAATTAACGCACCACCCTCCTTG 1011893 24 100.0 40 ........................ TTACCAGATATAGAATATGAAGAAGGGAATGTAAGAAAAT 1011829 24 100.0 39 ........................ TGGTAATCAAAGTTGTGGAATATACCGTTGTTGTAGTGT 1011766 24 100.0 42 ........................ CTGGTCCTCTTTTACAAGCTTTTCCACTAAAGCTCTATCATT 1011700 24 100.0 44 ........................ TATAGTACCGTCAAGGTTCCAATACGGTACTTAAATAGTACCAT 1011632 24 100.0 39 ........................ TGCATATCCTCATCCACATACTCGCTTACACACGTTTGT 1011569 24 100.0 40 ........................ AAGGAAATAACGGGGACGACCAAAGACGGCAAACAGTTTA 1011505 24 100.0 41 ........................ ACAATTATGGTCTAAGTCGCCTACAGGGACCTATGCCTTTC 1011440 24 100.0 40 ........................ TCAATTCTTCTCTAGTCGGTAAATTCATATCTATAACTGA 1011376 24 100.0 41 ........................ AAATTTGATAGAGCTCTAGACAACAAACTTCTTAGAAATTG 1011311 24 100.0 44 ........................ CATCACCAATACCACAACGACGACCGCACCTAGCTTTACAATTC 1011243 24 100.0 41 ........................ ACTTGAACATCGCCGAAATTCCGGTCATAAGGAAGCACTTA 1011178 24 100.0 38 ........................ GATTTTATATTCTTCATTTTGCAATTTTTCAATATTAA 1011116 24 100.0 40 ........................ CAGGGTTGCGGCTAAGGGTATCAGAGAAACTGCTGCAAGG 1011052 24 100.0 41 ........................ GAACGCTTTACAAATATTATACCAGAAGAATCCTGAACCAA 1010987 24 100.0 40 ........................ TTTTTCTTATCCCCAATTATAACTATGCATAAACCAGTTT 1010923 24 100.0 50 ........................ TCAGCCATGACTTATAGCTTTCATAGGGTTTCATGATATTTGATATCGAC 1010849 24 100.0 41 ........................ TGCTCTAAGCTTCTAACATTTATGTTAGTCCCGTCTGTGAA 1010784 24 100.0 37 ........................ CGAATTAGATTTACCGGATTACGTGTTGAATAACACT 1010723 24 100.0 40 ........................ ATTATACTATGTTAATAATCGGTGCAATAATGGGCATAGG 1010659 24 100.0 41 ........................ AAGAAAAAACAGATACCTCCTGAAAAAGTGAAAGGAGTGTT 1010594 24 100.0 38 ........................ GACACGATTTTGTCACCAACACGGATCTGCATGTCCAA 1010532 24 100.0 40 ........................ CATTACTTGCCGTATATGCCCTAAGTGAACCTAAGATACT 1010468 24 100.0 40 ........................ AAATGGTATTTAGGAATAAGCACATGGAAGGAGGTTAGAG 1010404 24 100.0 41 ........................ AATATCGGTGCAATTATGTATACGGCTCCACCTAACGTGTT 1010339 24 100.0 37 ........................ AACCTAGAGGACATAAGCATAAGGCTGAGGAGGGTGA 1010278 24 100.0 41 ........................ GTTTGGATCTCAAAATTTTTAGTTGCAGTAGCAAGCTCTTT 1010213 24 100.0 41 ........................ ACAAATTCGTTAGGCTTAAGGAATTTAAATAATTGCTCCAA 1010148 24 100.0 39 ........................ AAAGTTTTATGCTAGGTAACCTAAGTAGATTATCGATAT 1010085 24 100.0 37 ........................ TCATGGAAGGGTGCGATCTAGTCGCCTTTGCGATTTC 1010024 24 100.0 42 ........................ CTGTTCCGATTTCTTTAGAAACCAGCCTATCGGGTCTTTACT 1009958 24 100.0 40 ........................ CCGAAACGTTGCTTGGGTCAAATAACGCTATTATCTCGGC 1009894 24 100.0 41 ........................ ACAAGTTTTCCAATATATCTCATAAACCTACACTCGACAAT 1009829 24 100.0 41 ........................ ATTCTCTATCGCTTTGCTTACAATGAAAGCACTGACCAATT 1009764 24 100.0 42 ........................ ATCATGGACAGCTATACAATATTGCTTATACTTTGTCAGTCT 1009698 24 100.0 40 ........................ TTCATAATAACTATCTGACGGGTCACCATTAAACTGGTAC 1009634 24 100.0 40 ........................ AACACTTTGTGCTTAGCTACCCTAAGTGCTTCTTTCAGAA 1009570 24 100.0 41 ........................ TTAAAAGATGAAGAGTCCTTACAGATCAGGAAATATATCTA 1009505 24 100.0 40 ........................ GAGAAAAATTGATAAATTTATGGTACGCCTATGCATTCAT 1009441 24 100.0 42 ........................ ACGTTTTACAGGGTATATATTCACTTCAGGAACTTCTTCCCT 1009375 24 100.0 44 ........................ ACGGACTGTGAGGGCAATATCTTCAGTAACTCGGTCTTAAACTC 1009307 24 100.0 43 ........................ TGGGATTAATGTAGAGGTGTGGAAGGCTAAATTATTTCCCTAC 1009240 24 100.0 43 ........................ CATAATTAACACTTACTCTGTACAAACTAACGTAAATGTTCAA 1009173 24 100.0 38 ........................ GAGGATAAGGCTAAGGTAATGGGAGCGTTATTGAAGGG 1009111 24 100.0 39 ........................ GAATGCGTCCAGGAAGCCATAGATGACCTCAACAGCGAA 1009048 24 100.0 43 ........................ TTATTGCTATATTTCTAGTCCATTCAAATATCCAAAGTGTTGC 1008981 24 100.0 40 ........................ ATAAACAAAGACGAGGCTCTCGAATTATTCGAGGCTACGA 1008917 24 100.0 40 ........................ TTTGATTATTATAAAGACAAATTAACGGATGAAGAAATAG 1008853 24 100.0 42 ........................ ATTAATGTATAATTGCATAACGTTAAGAGTTTTTGAAACCAC 1008787 24 100.0 39 ........................ AAAAAGACGTAGAAAGTAAAGGCGAACTGGAGACGGAAA 1008724 24 95.8 40 C....................... GTTAAAGACGGTAACTGTTATCGGTAACGTTATTTCACAC 1008660 24 100.0 41 ........................ TAAAGTCCCTCATTGAGGAATCTAAATACTTCTGCATGTTC 1008595 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================== ================== 80 24 99.9 41 GTTAATCCTCAATGGAATTGAAAG # Left flank : TCCAGTGTCATGCTTTTGATAAACGCTACCCTTGAGGTAGGCATTGCCACCACCCGTACTACTCAAATTTGATGCCCAATTTCGATTTGTATTTCCCGAGGTCGACACTGTCATCACCTGAATTGGAAAAAATACTGAAATGATGTCTTACGTAAACCAGCCCTTTGACTGCTGTTTAGCCTCGTTTACCCCGTCATGTGTGTAGGGCATAACCTCCGCCCCGGTCCAGGACCGGTCGTATAGTCTATTTTTCGTACTCCTTCTATGCAATATGAAGTATTTCGCCCTCCTAATTCCCGGATTTTAGCGGGAATTGCTTTCAATTAGTCAGTGAGCGGAAAAATTCTTCACAGAGAGTACGTAAGACGTAAATCTCTTTATCAAACTCCCGAAATTTCAAGGGAGTGACAAAAATTCAGTCATGACAAAACTGTAAAGTACAACAAAGCTTATATAAGAGAAGAGCAAAATTAAGGATAGACATAGTATAAAAACATTCA # Right flank : AAAAAACTGCTGGTACCTTGATTAATACGTAGGCCGGTCACCCCTCTGTTACCTAGATGGGCCCTTTAGGCCGGTACAAGACATAAGCGAGTCACCCGTTTTCAGTTCCTTTTTCCGGCCTTGTTTCTAGCGGTTTTTGTGCACGGAGCAAATGTACCTTCAGTATTTATTTATAAGGTCTTTCGAATACTTGGTAGCCTTCAAAACGACATGGCGATTTTATAAATTATACCGTAAAAGTCATGTAAATAACGCTTTATGGTGACGACTGGGGGGACGAGTATCAGCCCCCTATAAACGCGTACTAGGAATGGTGACGTGTACCCGACACACACCGGGTAAAACGATTGAGACAAGTCTAAGGTTAGGATTTTTCCCGTATTTTAACAATTTTAATATTATCAGGACTCGTTTTAATTACATTATTATCCGTATAAAAGATTATCTATAAAAGATTTAGTCGACCTTCTTTTTGTTATAGGGACGTTATTACATATAGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCCTCAATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 3 1023008-1028934 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024597.1 Stygiolobus sp. KN-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 1023008 24 100.0 39 ........................ AGTCACTGACCCCGTCGTTCATCTCATAGAACATCTTAA 1023071 24 100.0 42 ........................ AAACAATCCTAGTGTAGTGGATTACATCTCTTCTAGTCCTTG 1023137 24 100.0 38 ........................ CTCTTTTCTGTCTCTTTTTACTGCTTTACAAAACTCTC 1023199 24 100.0 39 ........................ TTTATATGTCACGTGTTAGAAGAACAAGAAGTAGAGACA 1023262 24 100.0 39 ........................ TCTTTCCCTTTTATCCTGTAGCCCTTAGGAACGTTTATC 1023325 24 100.0 40 ........................ TTCCTGACATCACACTCTAGCTGCAGTGATTTGCACTCTT 1023389 24 100.0 41 ........................ TCTCAGAGTTACAATATCCCAGGGTGGAATGAGATATCATA 1023454 24 100.0 42 ........................ CATCTCTGCTTCGATAAATTTTACGCCCGCTCTAGACACTAG 1023520 24 100.0 42 ........................ ATGTCATCTGTCTTGGCCCTTTCTTCTTCTGGAATTTAGACC 1023586 24 100.0 40 ........................ GCATAAGAACCTCCCGTTGAAGCGTGGATTTCGACCTCAC 1023650 24 100.0 42 ........................ AGTTAGGGGCGGGCGGGGAGCCCGAGAGAGAGTATAGAATTT 1023716 24 100.0 40 ........................ TCTCTTTGCCCTTCGGCTCAAAGCCTTTAGTTGGATCCAG 1023780 24 100.0 38 ........................ ATGAAAGTCTTTATCCCTTCAATTATGTCGTTCACTAT 1023842 24 100.0 42 ........................ GAAGTAAGTATTGGTTTATGGACATCATTAATGGTACTCCAT 1023908 24 100.0 40 ........................ TTATTAATATGAATATCTGATTACTTCATCTATTGCGCAT 1023972 24 100.0 41 ........................ TTTCCAGTAGGTTTAATTCTGTTGTTAGATTCCCTTCAATA 1024037 24 100.0 40 ........................ CAAAAGAAGAAAAACCCGAAATATTAGAAGAAGAAGAGGA 1024101 24 100.0 44 ........................ TCAATAGGTTTTTCTTGTCGTCAAAAAATTGTGGAAAAATATAT 1024169 24 100.0 41 ........................ TTAATGCATCATAGAGTATATCTGATAGGTCGAATACTAGT 1024234 24 100.0 42 ........................ TGGACAGGAAAGAGGTCAGTGAGGAAGACATAGAGTACTGCA 1024300 24 100.0 40 ........................ GACAACTGGAGCAATAGAAGCACACAACAAAGAGGAGCTA 1024364 24 100.0 40 ........................ AAAAATTAAGTCAATATACATTTTACGGTCTAGACGATTA 1024428 24 100.0 40 ........................ ATTATTGTAGAATTTGTTTGAGTTTCATCAAAACCTGTAC 1024492 24 100.0 41 ........................ ATTTTAGATATAATATATGCTATAGTTGGACTAATAGTAGC 1024557 24 100.0 43 ........................ TTTCTTCCTCGGGGTCTTCCAAATAATACTGTCCGTTTCCTAT 1024624 24 100.0 41 ........................ TAAGCTGAGTCGAATTCATGCCAATATGCACACTCTAATTT 1024689 24 100.0 43 ........................ ATATTTTTATTGTTAAAACGTTAGCATAAAGTAAATTATTCAC 1024756 24 100.0 40 ........................ ATCACCTGACAAGAAGTATATTGTATTATCACTCTATGAA 1024820 24 100.0 42 ........................ ATATAATAAATAGGAATAACACTCCGGAAAGGTAACGCTTCA 1024886 24 100.0 42 ........................ GTATTCCGTTAAGACCTGCAGAACATATTGAAAATAAGATTA 1024952 24 100.0 39 ........................ AAAGATACTGCTAAAATACCTAAGTTATGACGAATATGT 1025015 24 100.0 39 ........................ AAGAACGCTAACAGGTTAACCAGGTAGTTCAAATAGTGC 1025078 24 100.0 40 ........................ ATACGTCGCAATACCTTTCATACAAGTCACCTCATTTTGA 1025142 24 100.0 41 ........................ CTGGATTTGGGGCTCTTTGGTCACCGGAAGAAGAATGGTGG 1025207 24 100.0 41 ........................ TTTATCCCTATGCCTAGCTTCTTCCTCAGCCTCTTTAGGAA 1025272 24 100.0 43 ........................ GTATAGATACAATCTATTCATTTTACATATATACACAAATTAT 1025339 24 100.0 41 ........................ TATCGTGTTGACCTTAGGGCCCTTCCCCAACTGTCCGTAAG 1025404 24 100.0 43 ........................ AAAGGAAAAGGAAAATCAAAAACGCGGTTTCTTTTGAGTCCAT 1025471 24 100.0 41 ........................ TATGATGTCCAGAATTTTTTTGAATCCATGCCCATAAATTT 1025536 24 100.0 39 ........................ ATGCTGTATAATGATATGGGATGCTGACTGGAGGGAAAG 1025599 24 100.0 43 ........................ CTAATACGGATCCCTTCCTAACTGCAAACTTGAATATTCCCAA 1025666 24 100.0 43 ........................ ATTACTACCTCTCCATTCTCTGTAGTAGAGATCGGCAAACCGA 1025733 24 100.0 42 ........................ GCTTAAGCAGGAAATACTGCAGCTGTTAGCGTACAATGCTAC 1025799 24 100.0 42 ........................ GATTTGTACACCGTCTACGCAATTCATTCTTATACATTAACA 1025865 24 100.0 42 ........................ GACCCAAGTCTATACGTGCAACGGCATTAGTCACCTTTCTAG 1025931 24 100.0 43 ........................ CTGTACAGCCTCCTCCACACATAACGGGTTACCATATAAAACA 1025998 24 100.0 42 ........................ TCTCTCTTTTTGCTATTTCATAGCGTTAGCGTGTTTTTGCTT 1026064 24 100.0 42 ........................ TGGATCTGGTAACTGAATTGGTTATTCTGCAACAAATCGAAA 1026130 24 100.0 42 ........................ ATAAGTTGAAACAAAAACTAGAAAAAGACTTTCCAAATTCTG 1026196 24 100.0 42 ........................ TTACCTAGAGGCATTAAGGATAATTTACCAATTAATTTCTAG 1026262 24 100.0 42 ........................ TCATCATGGTATATAGTAGTAACACAGATGGGTTCAGGTTCT 1026328 24 100.0 42 ........................ GCAGTGCGCGCGTTTAGGTCATATTGAAGCGACTCAAAATAT 1026394 24 100.0 40 ........................ CATTAGCCTTCTTCCATTCCCCTACAAAATCGTATTCCTC 1026458 24 100.0 43 ........................ CAGCTCTAGCTTCAGCAATATTCTTAGCAGCTGCAGGAACTTT 1026525 24 100.0 40 ........................ CATAGAGCATCAATTTTACCGTGGATCTTTATACCCTCAA 1026589 24 100.0 42 ........................ AGAAATATCCGCAAAAAAGATAGAAGCTGAATTTTTAGCGTA 1026655 24 100.0 42 ........................ AAAAAATGAGATTGGTCAGGGTAAGGGGGGCTTTAGATTATT 1026721 24 100.0 41 ........................ GTTAGCGTTCTTCGCCGATATGACGGTAATGCTAGCTGTGT 1026786 24 100.0 39 ........................ ATAAGGAAAAAATATACTAGGACTGAAACGGAACTTGTA 1026849 24 100.0 41 ........................ GTTTACTGCTTCTTCCATATTTTCACTGCTTTCTAGCTCCT 1026914 24 100.0 41 ........................ CGATATACGTGGGGTTTTCAGTACTTTGTAAATAAAAAACT 1026979 24 100.0 43 ........................ GTGTGCCCGAGCCGGCGTTGGTAAGGTGACCACGGGGTCATTG 1027046 24 100.0 39 ........................ CAAAACTCACCGCGACAATACTACCCCTGACCTCAGCAT 1027109 24 100.0 38 ........................ ACATCGACGAGTTCCAGAACGTGGCTGGGCTCCCCTAC 1027171 24 100.0 40 ........................ AAGTATATGTTATCCGTACGGGTATATAAATTTATCCGTA 1027235 24 100.0 41 ........................ TACAGACTTTACGACTTGGTGGGCTCCCCATCCCGTCATCA 1027300 24 100.0 39 ........................ AATATAACATGTGTTTGTTTAAGTATATAAATCTTTTGA 1027363 24 100.0 39 ........................ TTAGAAGAGCAGAAGAAGAAGCTATTGAATGAACTGAAG 1027426 24 100.0 41 ........................ AATACCGCTCTCTAAGGCGATACGGTAGATGAAGTATACGT 1027491 24 100.0 42 ........................ TTTATGTTTTGTTCATTATTAAAGTGATTTTAAGGACTTTGC 1027557 24 100.0 38 ........................ GTACACACCCCTAACGCCCTAACTACACCGCAAAAGAA 1027619 24 100.0 40 ........................ GACTTTGCTGTCCATACTTCTTCAAATAATAAGAAAAAAG 1027683 24 100.0 42 ........................ TGGGAGGAGGTCAAGAGGAAGGGTATCTGGTATTTCATTGAA 1027749 24 100.0 41 ........................ GGACAAAGCTGAAAGTTTGTTGGAGGACCTGAACGACATGA 1027814 24 100.0 40 ........................ TTGATTTATCTATTACCTGTTTCTCCTCAGGAGTCCTCAT 1027878 24 100.0 41 ........................ CAAGCTTTTTCTTAATTTCTTCGATTTTCTGGATTAGTACC 1027943 24 100.0 41 ........................ GGACAAAGCTGAAAGTTTGTTGGAGGACCTGAACGACATGA 1028008 24 100.0 39 ........................ TCCGTCGGCTTCGATCCTCAGCAACGTATCCACGATCTT 1028071 24 100.0 41 ........................ TACGTAGTCTTTATTGTAGGAGTTATAGTACTCCAATTCAT 1028136 24 100.0 38 ........................ TTTAGGGCGGGGTAGTTTACTAAAACCTCTTTACGTAG 1028198 24 100.0 36 ........................ TTAAAATTTACTGTCCCCCCCCCCCCGACTAATGTC 1028258 24 100.0 41 ........................ TTTTGTGTTGTTTTTTCTATCACTACACATTCACCATCTAT 1028323 24 100.0 41 ........................ TCTATATCAGTGTAGTAGAAGTAACTTACATATCCGCTTGA 1028388 24 100.0 41 ........................ TGTTTGTAAAGAGTTGCGAAAGATTAGTGAAAATGTCTTGT 1028453 24 100.0 41 ........................ CATAAATCTCTAGATGTACCAGAATACGGTTTCATTGGTCT 1028518 24 100.0 44 ........................ ATACTCCTAAATGCGTTCTCTACTAATATGGTATCCCTTCCCTC 1028586 24 100.0 41 ........................ GTAGTTTCAATAGTCAGGCATTATTTGAGTACATATATTGT 1028651 24 100.0 40 ........................ GGGTAGACTTGCAGGGCTACAGAGCTTGTCATTGAACGAT 1028715 24 100.0 41 ........................ CTCACCCTGGTGTTGCGCGTTACACCCGCTAATACATTCTT 1028780 24 100.0 42 ........................ TAAGCCTCTTTAAGAGCCTGTACTGGAGTGCAGCCATGCTTG 1028846 24 100.0 41 ........................ TACTTTCTCTGGCATTACTAAAACAAATGCATCATCCTTTT 1028911 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================ ================== 92 24 100.0 41 GTTAATCCTTAATGGAATTGAAAG # Left flank : ATTATGGATCATTTTTACGTATTTGTAGTCCCTCCTTTTAATTTTGTCAAGGTGGGGGGTGATGAAATGACTGGGGTGCTAAAGGTAGTGACTGAGAGGCTGGGTGCTAAGGGTGGCTGGGCGACTAGTAAGGTGCCTAAGGCTATAACGCCCATACTCGGTGTGCCTAAGAAGGGGAAGGTGCACTGGGAGGGAGGACCGGTGTACCCTACTTAGTTAGGCGGCGCGGTGAGTAAAGGTAAGTAATTTTCTCCTAATAGTTCTATATAAAAAACAGTATTTCTGCCTTTTTATTCCCGGCCTTTTCCGGGAATTCCTTTCAATTTGTCTTTGAACAGACAGCTTCTAATGAAAGAGAATGATGTCCATGATTCTCTACTTCGAACTCCCTAAATTTCAAGGGAGTTGAAAAAATTCAATAATGATAAATACTTTAGGGGGAGTAAAGTTTATAAATGAGAAAGGTCAATAGTATTTTTGAAGAAGTATAAAAATCTTCA # Right flank : GTAAATACCTAGAATGGCTAACCAGGTTTGGTAACGCCGGCCATACACTACCTGAGGGTGTGCCCGGTGTCCCGGTTAGGGGACTTGAGGAAAGGGACCTCGCCGAAAGAGAGGGCGCTTATAAGCTAAAAGGCTGGATAAGGAAGAAGCTGTTAGGTATTTATTAGCCTATGGGGGGGGGGGGCTAAAATAATTACTACGAGGTCGATGTTGAAGGGGAGGGTGAAAAGGTATTTTATAACGAGGTAGAAGCCTATGAATTTATAATTAAAAAAAAAGAGGAATGAAGGTGAAAGTGTGAGGGTCGAAGTGCCGGACAAGGTGTATTTCCTTAGGACTTTGATCTGGAAATTGAGTAATAACTTTTCTTCTTTTCTCTATCATTTCGCCCCATATTGGACTTTGATCTGGAAATTGAGGGCGTCAGAGTAAAAGCCGAAACCGACACACGTCTTGACGGAGAGGTGTAACCGTGACCGGGGGGGGGGGGATTTTCGACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCCTTAATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 4 1031751-1036485 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024597.1 Stygiolobus sp. KN-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 1031751 24 100.0 41 ........................ AAGCATATAGAGATGTTTAAGAAAGAGGAGTAAGGTCTGAA 1031816 24 100.0 42 ........................ TATTCTCAGTGTCATAATACCCATACTCCTTACAGTATTCTA 1031882 24 100.0 40 ........................ CCCACACTTACGATTTATTGACAAAGGTACAAAAGGGTCT 1031946 24 100.0 37 ........................ GAGATAGTGCAAAGCGTCTTAGAAATACGTTGCCCAG 1032007 24 100.0 41 ........................ AATCCCTGCGTCGTCGAAGATTATGAGCGGGATCCTATAGT 1032072 24 100.0 38 ........................ AAAGTTCTGTGTAACCTCTTGTTTCAACACTCCCCCTA 1032134 24 100.0 42 ........................ TCTTTTAGTTTTCCTAACTTTTAGCAAGAGAATTAGGAGAAA 1032200 24 100.0 40 ........................ TTCAATTGAACATAAAGAAGGGCTCGGGCCGGGACTTGAA 1032264 24 100.0 42 ........................ TTTATCGATATACCTCTCCTTTTTCTTCACGTTCTTAGCCTT 1032330 24 100.0 38 ........................ TATATGGTGAGAGAGATGAAAAAGCTGAGTTTGGTCAA 1032392 24 100.0 43 ........................ CTACAGCGATACTGTAGCCGTAAAAGAAGGCCGTAACAGAGCC 1032459 24 100.0 39 ........................ TAAGGAGCTACTTCTGCCCAGCTAATTACTGGAATATAA 1032522 24 100.0 41 ........................ GTAATACATGTTCTGCTGGAATTAACACTTTCCTGTGGATG 1032587 24 100.0 39 ........................ CACTTGCCTTGACAACCGATGATTTCCATTAGGACGTTG 1032650 24 100.0 42 ........................ ACTGGTTTAAATGTAAGTATAGGCTGATTTTTATTATTTCTC 1032716 24 100.0 39 ........................ ACAAGTGTACCTGACCGGCATTGCAGTCACCTCTTTGAC 1032779 24 100.0 39 ........................ CATGATAGACTACATCAGCAGTGTATTCGAAGCCTCTGA 1032842 24 100.0 41 ........................ TAAAGATTATCTCTTTGAGTGTTTGTTTATTGTCCTCGCTA 1032907 24 100.0 43 ........................ GAATAAATTAAAAGAAATACAAAAATTAAAAACGCGTACTCTT 1032974 24 100.0 37 ........................ ATTTGTCTGCCATAAACTGTTCATAATGTTCCACAAT 1033035 24 100.0 40 ........................ TACATTGGGTCAAGTATGTACGCTAACGGAGTCCCTACCT 1033099 24 100.0 41 ........................ TAATTCTATACTGGTGACTTTAGAGGTTATTTCTATTATCC 1033164 24 100.0 40 ........................ TTCTCGAAGAGTAAAAGGAGTGTACCGTAGTCGTAGTAAA 1033228 24 100.0 39 ........................ CACCTTATCCGATATCTATGAACTAGTCCTAGCACTCAG 1033291 24 100.0 42 ........................ TTTTGCTACGATGTAGATAATTAGTGCTACTATCCACGCCCA 1033357 24 100.0 41 ........................ TACCAGGTTTTTGCTAGGCCGTCTAACTACTATAACGCCAC 1033422 24 100.0 43 ........................ TCACAATAGTAATAATAAGGAATAACACAATCATCCATTCTCC 1033489 24 100.0 36 ........................ TACAGCTCTTCTGTTTTAGACAATGGAGTTTATTGT 1033549 24 100.0 45 ........................ CTTTAGATGACTGTGGAATTAGATTTAAGACCGCTTTAAGCTCTT 1033618 24 100.0 44 ........................ AAATAGGAAATACCCCTACATAATGCCAATAGCCTGGAACTTTC 1033686 24 100.0 40 ........................ ATACCGATGATCATATCAACATCACCCTGACTCATGATAT 1033750 24 100.0 40 ........................ TAACTGCCGATATCTCTGCTACAATCTCGTCATCTTGAAG 1033814 24 100.0 40 ........................ TCCGATGCCCGAATTTCCTTTGGTAATTTATGCTGTTCTA 1033878 24 100.0 40 ........................ GGAAATTTGTGAGAAGATGGGGTTAAGAAATGACTGACAT 1033942 24 100.0 42 ........................ CAGAAGAGTCTTTTCTCCAAACCCGGGCATACTCATACTTAA 1034008 24 100.0 43 ........................ CTTTTTCCCTTATCTTTACGTACAAATCTTTTGGGAGATTTGT 1034075 24 100.0 39 ........................ TTGTATAATGCATCCTGGATAGGAGGGAAGTACCCAGAA 1034138 24 100.0 43 ........................ CTATGACCGATTGCGTTGACTAAGTTATCAGTCCTTATCTCGT 1034205 24 100.0 41 ........................ GAACTCATTGAAAGAGGGCGAAGTAGAGATGTAACCGTTAA 1034270 24 100.0 39 ........................ TCAGATAAAGCGTTAAATAAAACGTTCTCAAAAATACGT 1034333 24 100.0 42 ........................ CTTCCCTATAACACGCTTTAGGTAGTAAGACCAGTTCTTCCA 1034399 24 100.0 42 ........................ CTCGTCCGCCGGTGCCTCGCCCCTCATGAACTTGTAGTATGC 1034465 24 100.0 42 ........................ AGGGAACTATGAGGTGAGATGAAATGAAAGAGGTTAAGCTAT 1034531 24 100.0 40 ........................ ATAGTATTTGTGCTGTTCATGATACTGTCGTACTCGAAGA 1034595 24 100.0 38 ........................ CATTTTCCGCCCACCCTAGCAAGATACTCTTTAAACGA 1034657 24 100.0 37 ........................ TACATGTACGAGTTTTGCAGAGTAGAATTGTATACGA 1034718 24 100.0 40 ........................ TCTTGAGACATAAACCATGCCCTTTTTCGCATATGCCAAA 1034782 24 100.0 38 ........................ GAAAGTTTGGTAGTCAGAGACCCTAAATATCTGGGTAA 1034844 24 100.0 41 ........................ AGGCTACATTTCGAAAGAAAAATCGGAACTAGCAAAAGCGA 1034909 24 100.0 36 ........................ CTCTTTTCGTAAAGGTGGGTGTGTTACACAGGAGGG 1034969 24 100.0 39 ........................ CTCCTCCCGCGGTTTTCCTAAAATTGTCCTGAGTTTCAC 1035032 24 100.0 40 ........................ TCTTCCCTACCTTGATTACCCCGCTATCACTAAGTGTTAC 1035096 24 100.0 41 ........................ GTGTACTCGTTTTATGTAGCTGAAGTTAAAGCTTATGCGAA 1035161 24 100.0 42 ........................ ACTTGAGCTAAATATATGTATGTTAATGCATAAAGTAATAGG 1035227 24 100.0 42 ........................ ACTTGAGCTAAATATATGTATGTTAATGCATAAAGTAATAGG 1035293 24 100.0 40 ........................ AATATTAGAAAACTGAACGTTACAAGTCAGATAATCTCAC 1035357 24 100.0 38 ........................ AAAAATGCTAGACCAGCTATAGCACCGCCCATTGCAGC 1035419 24 100.0 42 ........................ TTGGAAAGACAAAGAGAGGATTAAACAAGACATTGAAATAAT 1035485 24 100.0 41 ........................ TAGTCCTTGATGCGTTGGACTTCTCTCGTAGCAAGCCTGTA 1035550 24 100.0 43 ........................ TTGCTATAAAGCATCGACCTCGGCGTACCCATTACCAATTCGC 1035617 24 100.0 42 ........................ ATACTCAAACACAAATTTGTATCTTCTCTTATTTGTCCCCGT 1035683 24 100.0 40 ........................ CTAGTAATAGTATGATTAAAGATCTCAATACTATTGAATA 1035747 24 100.0 41 ........................ ATATCTTTGCACAAACTGGAAATTTCAGTGATGAAGTTTAT 1035812 24 100.0 40 ........................ TTATGTGGGTGAGTAATAAATTTAATAAGTATATCGCTAA 1035876 24 100.0 41 ........................ TCATCCCAGCTCTCTCTAGGTGTATATAACCACTCTGGTAT 1035941 24 100.0 40 ........................ TCAAACTCCTCAAAGGTGAGCTGAATGGCGGGGAAGAGGA 1036005 24 100.0 43 ........................ GACATTCATATAAGCGTGTTCATATAGCCACTTAGCCTTCTCT 1036072 24 100.0 41 ........................ CATGATAACAAGGACGTGGAACGCGGGAACCATAGAAATAA 1036137 24 100.0 39 ........................ TTTACTGTTCTTGCCGAAATAATAATCTATAACACCAGC 1036200 24 100.0 41 ........................ ACAAGTAAATCCCAACTGTTAGTGAACACTATAATGTCTAC 1036265 24 100.0 43 ........................ TTGATATCTTAAATACTAAGTTATGTACTCTGTACTGTTTTGC 1036332 24 100.0 40 ........................ TGTCATAAACGGTATGGGTAGAGAGGACTTAGGTTCGTTT 1036396 24 100.0 42 ........................ ACACATTGCGTTATATTGTACTATTTTTATATTTGTATATAT 1036462 24 87.5 0 ........T..CC........... | ========== ====== ====== ====== ======================== ============================================= ================== 74 24 99.8 41 GTTAATCCCTCATGGAATTGAAAG # Left flank : CCCAAAAGGCTACGTCGTTTACCGCCGTGTTCGTCCACGCGTTTTCCTATGACTATCCAGGGAGTTACCCGGTCTACAACACCTGCCTTTTTCTGGGCCCTTTCAAGGTAGGTGAAGCCCCCTGAGGGTTACTCTGCCTGAAGGCTCGTCCTTACTCTCTATCAAGTCAGCCTTTGTGTTGAGCCTTGGGCCTCGTCTAGCGTCGTCTTCTGTAGGGCGGAACTCAGCCTGACCCAAGTTTAGTCTATTTTTCGTATTTCTTCTGTGTGGTAATAAGTATTTCGCCCTCATAATTCCCGGTTTTCAGCGGGAATTACTTTCAATTTGTCAGTGAGCAATAAAGTTCTTTAGGTGGAGTACGTAAGACGTAAATCTCTTTATCAAACTCCCGAAATTTCTTGGGAGTGATTAAAATTCAGTAATGATAAAACTGTCAAGTATAGCAAAGCTTATATAAGAGAAGAACGAAATTAAGGATAGAAATAGTATAAAAACATTCA # Right flank : GTAACTGTACAGTGCGCGGAATATGTGTGGTGTCTGTTATGTTAACCCTTAGAATTTAAAGTAGTGAAAGGTATTCCTTCTCGTAGCCCCCGTCCCTCCGACCCACGACAAGACCGGGAGGATCTTTATTAAATATAGTAGAAAAGGTGTTAGGGGCACAAGGATAGGTCTGGGTCAAGACCGGGTATAAGTCTTTACTGTGGTGTGGGGTCCCCCACCCGGTCAACTAGCTGGTACCGGCCTAAAGGGCCCCTAAGAGTCAACGACGGCTACGCGGGGTGCCCCTACCCGGTTAGGCACGGGGGCATACGTCGGGCGTGCTCGTGCCCCGGGCCAGGGCCGTTATCCCCTCTATAAGCCGACCAAAAGTTAATAAATATGTTGGCCAGAGAGAATTTTATGGACGAGGAAAGGTGTGAAAAGGCGGCCTCCGAACTCGCCAAGGTGGCCAGGGTAGTAGTGAACTACGACAGGAGTTACGACATAATAGACGAACTCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCCCTCATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 5 1054379-1056403 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024597.1 Stygiolobus sp. KN-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 1054379 24 100.0 39 ........................ TGTAGCGATGCTAGGCGGCTGAATCGAAGCGAAACTCAT 1054442 24 100.0 39 ........................ TTATATTCAGGTATCTGGTCCATGGCCTAAAGGCGAGAC 1054505 24 100.0 40 ........................ GTATTTCTCCCTCTGGACTAAATAGGAGGTATCTCTTTTG 1054569 24 100.0 38 ........................ TCTCTTTGCCCAGGGCGTCCCTCAGGAACACGTAGTTG 1054631 24 100.0 39 ........................ TTCACTCTGACCCTGAGAGGCACTACTTGGAGACTCATT 1054694 24 100.0 40 ........................ TGAATTGAGAGATATTCGTATATGAGCTCTTGTACATAAA 1054758 24 100.0 40 ........................ CTTCATCGACCGGTGCCGTAAATTGGATTAACGTATCGTT 1054822 24 100.0 39 ........................ TTAGCCTGTTTAATTCTTCCCAACTAAAGGAGGTCTTAA 1054885 24 100.0 42 ........................ TAAAAATGCTTAAGCAAACTGTGAAACAGCCCAGCTCGCTTT 1054951 24 100.0 38 ........................ AGTAAGGAGACGGAAAGAAGGAGAGAAGAGAAAAGAGT 1055013 24 100.0 41 ........................ TAATCTTGTTCTCTATTGATTCGAAAGGTCTTATGTTAATA 1055078 24 100.0 39 ........................ TCAAAGGTGGAGATGGGTAGCATTTTGTAGTAAAACTTA 1055141 24 100.0 41 ........................ CGATGCCCTGGTCGAACTTGCCCTGTATGCCTTTATTATTT 1055206 24 100.0 43 ........................ ACGGGGAGAGTGAGGCTCTGCCCACCAAACACGCGGGCGGACA 1055273 24 100.0 42 ........................ TATAATCGTCTACTAATGCCCTGAGTCTGTTCCTAAGAGCTA 1055339 24 100.0 44 ........................ TATTTTATTGGTTGTTTGGCCTTTTTCGGCTTTCTCAACCTTAC 1055407 24 100.0 38 ........................ TCTAATCGTTAAAACGCTGGTCTACCACCCGGAACTGC 1055469 24 100.0 42 ........................ AATAACATATTCGAGTGCATGGCGAAGCTAGTCGTGTACGAT 1055535 24 100.0 42 ........................ GATAATATTCTGGATGTCATTACCTATAACAAACTGACCTGT 1055601 24 100.0 40 ........................ ATCAGTCCACCTAAAACGCCACCAATTATGCTGTACGTAT 1055665 24 100.0 36 ........................ TTTCACAAAAGACCCCACACGGATCAACATTCCGTG 1055725 24 100.0 43 ........................ AGGATACCAGTTCGAATGGTATGCAGGAGACACAGGTGATATT 1055792 24 100.0 43 ........................ AACTCTCTATTAACGTCAAAATTGCTTTTTTTATCATAAAGTT 1055859 24 100.0 45 ........................ GTCTTAACAACATCTTTATAACGTTCACCGCTTCTCATTTATTAG 1055928 24 100.0 40 ........................ TAGAATTAGAAGAGAAGACCATAGGGACATATTACTTCAC 1055992 24 100.0 41 ........................ CCCCCATAAAATGATGAAAGCGAGCGGGCGTGAGGAAAATT 1056057 24 100.0 42 ........................ AACGAAAGAAAGAGATTATGCTTATGTCTTGTATAAAATTAA 1056123 24 100.0 38 ........................ TAAATAAGAAATGGAGACGGGATAGGGATGTTTTCAGA 1056185 24 100.0 40 ........................ CGATATAAGTTCGATATCAAGGAGTTTATAGAAGCTGAAA 1056249 24 100.0 43 ........................ TAAAACAATAGTCTTAGATTTCGAGTGACTCCATCTAAGGTAG 1056316 24 100.0 40 ........................ ATACGGCAACACTTTCCAGGCTGTACTTTCCACACTGTCT 1056380 24 95.8 0 ...............G........ | ========== ====== ====== ====== ======================== ============================================= ================== 32 24 99.9 41 GTTAATCCTTCATGGAATTGAAAG # Left flank : TGCCGAGGCGTTAGGCTATGAAGGGGTCATCAGGGGGAGGGAAAGCCCAAGTGCCTCGATCGTGTCGAGACGTGAGGGGCTGAAGGGACTTAGGAGGACGGACTAGTGGCCGCGTCTCCGAGGCATAGAATAGAAACCGACGCCGATAACAGCGTTCTCGGTTCACTGTGTCTTAATTGTGCAAAGGCGTTGGAAGTGGTTTGCTCCTGATACAATGGCCCTCTAAGCGTAACAAGTAGATAGAATTACTAACATTTTTTGTCTATGTGATATAGAGTATTTTGCCCTTATAATTCCCGGTTTTCAGCGGGAATTACTTTCAATTTGTCAGTGAGTGGAGAAATTCTCTACCATAAGTACGTGAACCGTAAATCTCTTTATCAAACTCCCGAAATTTCAAGGGAATGACAAAAATTCAGTCATGATAAAACCGCAAAGCACAGTAAAGCTTATATAAGAGAAGAGCAAAATTAAGGATAGACAAAGTATAAAAACATTCA # Right flank : GCCGATCAATACAACGCCCCCTAGACTTAACATAACAAAATATGTTAATCCTCAATGGTAAAGCAGTCTTTTAGGGAAAGTTGGGCCTAAACTTCACTATCTGAAGCTGATGCCTCATAGAAGTAACAGTTCTGAAGCCTTTAGGCACCTCCTTTACTTAGAGTTATATGATTAGTAGTACCACTACGTAGACAAATATTAGGTTTAATTCTAGATAACTGAAGAGGAACCGCGGGCATGAAATCCGGGGTGACTGTAGTAATTTTTAAGGAAATTATCAGGGTTACATCTTATCTGTCGTGTTCTTGTAAAGTATAGTAATTTTATGTGTACGCATGTTAGACAGAGAAGGGAAGCACAGTGTCAACTAATAACGATTATGAAAAATTTATAAACGGGCAAGAAACAGTAAAAACTACGATATAAGAACAAGGAAGAAATAGTCAATAAAGAGGTTTACGACGATATTAAACTGGTTAAGGAAAAATCAAAGGGCTTCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCCTTCATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 6 1074820-1070621 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024597.1 Stygiolobus sp. KN-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 1074819 24 100.0 39 ........................ TCTTCCTAGCTCTATGCGGACTTTCTTCCTCCTGCTCAA 1074756 24 100.0 42 ........................ CGCTTATACTTCAATGAATATGTTGAAGGGATCCTAGCTTGT 1074690 24 100.0 38 ........................ AGTCGTTTCATGCATCCCGTTCTTCCTCATCTTTTTTC 1074628 24 100.0 40 ........................ CAATATTGTTAGTTTTCATTGTCTCACTAGTAACTATTGT 1074564 24 100.0 40 ........................ TACAATATAATGAAAATACGGAGTCTAAGCGGGGCCTTAG 1074500 24 100.0 41 ........................ CCTAATTGACGCGTTAAGACCTTTGCACCTATGATTGCGAC 1074435 24 100.0 41 ........................ CTAAGACCCTCACTGGGGGACACCCCCAGACCCCCAATGCT 1074370 24 100.0 40 ........................ AGGTCAAGAGCCCCCCCACGGAAGCGAGCGCAAGAAGAGC 1074306 24 100.0 39 ........................ TTAAAGACTAATGGTTTGTCCAATTTTAACGTAAGTAGA 1074243 24 100.0 42 ........................ AGTTAATTATGTTGGAAAATAGTAAAAATATTCCAAAGATGA 1074177 24 100.0 40 ........................ ATGGCACTACATTATTTAAATCAAGGTAATAGTTTAGTAA 1074113 24 100.0 39 ........................ CAAATCAGCATTAACATAAACGATTTACGCATTGCCTCG 1074050 24 100.0 40 ........................ ACGTACAGCACAGTTTTTCCGTCCACAGTTATAGAGTTTT 1073986 24 100.0 39 ........................ GCCCATATGCACTGGTTATTAGGCGGTGCTGAGGCTTGG 1073923 24 100.0 38 ........................ CTTAACACGCGGGTAGACTTCTTTTGACTGAATGTTGA 1073861 24 100.0 43 ........................ AAATAAATTTTCTTGTTATCATCTATCTTCAAATAAACTTTAG 1073794 24 100.0 43 ........................ ATATTGAGGTTTAATGTAGGTAACGTCATATTCGCCGGTATTT 1073727 24 100.0 39 ........................ CCCCTAATAGCATTGGGGGTCTTAGGGGGTACCCCCCCT 1073664 24 100.0 38 ........................ CCCCTTAACCCCGCCTGCATTGCATTTTGCATTAGCAT 1073602 24 100.0 40 ........................ ATGCTCGCATCTGATGTAAGCATATTTAAAGAAAACGCAT 1073538 24 100.0 43 ........................ CCAGACGTGCTAGGACAACTGATACTCTATGCAGCTTTCGAAA 1073471 24 100.0 40 ........................ TACAACACGACTACTTTAACTGCTGGAATTTACTGTACAT 1073407 24 100.0 41 ........................ GACCAACCTTCTCGAACTTATACAACACAAACCCGCAATGC 1073342 24 100.0 40 ........................ CTGTTGAGCGTTATGCAATAAACCTCACTACTCAGAGTAG 1073278 24 100.0 43 ........................ TAACATTGCTAGAAGCTGTCAGCCCGCTCTGTGCCGATACCCT 1073211 24 100.0 42 ........................ CCTTTTTCCTTATATCGTCCTCGCAAGTTTCGTTAAAGTCAA 1073145 24 100.0 41 ........................ CACCTACCACCCCTACGGATTAAACACCCCAGTTTAATCGT 1073080 24 100.0 40 ........................ ATTTAAAAATCTTTCGTTTTGCGGAATGCGTAATAAGATA 1073016 24 100.0 39 ........................ TATATTTGGCGAAGACGTTTAAGAAGTTATCGAGAAAGA 1072953 24 100.0 41 ........................ CCACTTCTTCCTATTCATGATTAACGGGCTTTCGACTATAA 1072888 24 100.0 40 ........................ TGGCAGGACAGTGGGGGTTAGCGGGGAACATCGGGTTAGA 1072824 24 100.0 38 ........................ ACAATTGAACGAAGCTTTAGCCGAGTTTAATCCTTCAG 1072762 24 100.0 39 ........................ ATACGACGCAGAAGCGTCGTACCCTTGTTTCATAGTCTT 1072699 24 100.0 40 ........................ AGCCTCTTTGAGGACGATAGGTCCTAGCCTCATACGTCTG 1072635 24 100.0 40 ........................ TCTCGTCTGCCCACCAAATGAGAGATGTAAACCCGAATCA 1072571 24 100.0 37 ........................ ATTTTATTCTCATAAGTTACGAAAAGAATAGAAGATT 1072510 24 100.0 38 ........................ TTCTATTATCTGTTCAATTGAGATATTTGCGTCTTGTA 1072448 24 100.0 41 ........................ AACTACCACATACTGCTTTGAAACGATATCACTCATAGTAG 1072383 24 100.0 41 ........................ GCCCCTAGAAGTCCCGCTCCTAGCCCTGCGCCTGCGCCGAT 1072318 24 100.0 39 ........................ CTGAATTCAGTAGTGAAAAACATATACGCAAACGCAAAG 1072255 24 100.0 41 ........................ TTTAATATACAGTTCCCCCAACCGTATATCCCATCATTGAG 1072190 24 100.0 39 ........................ TTCCCGTCAACTTTCTACATGCAAGATAGAATTCAACAG 1072127 24 100.0 42 ........................ TTTATCTTTATTACTTTCGACACAGGTCTATTATTCTGTCTT 1072061 24 100.0 43 ........................ TTAGAAGAGTTTTAGTTAATAGTAGGTCCTTTTTAGATAAGTT 1071994 24 100.0 39 ........................ TCAACTTCACCGAAAGAAGTTAGATTGTATATTAATAGT 1071931 24 100.0 37 ........................ TCAAATTGGAGAAATTCGTTCTATTTAGAATTATATC 1071870 24 100.0 40 ........................ CAGATACGTGCAAATTTCTATATCACTCTCCTTACAAATC 1071806 24 100.0 40 ........................ ATTCAACACCTCTGATTCAAACGCTGAAAAAACATATATT 1071742 24 100.0 41 ........................ AGGATACACTATATAGCCAGAAATGTCTTTCAACTTATTGA 1071677 24 100.0 41 ........................ CTATAACTTTATTATTATTATTTTTTCTATATACTCTGCCG 1071612 24 100.0 39 ........................ TCATATGACAAGTTGAAGGTCTGCACTAAGTTGTATGGG 1071549 24 100.0 41 ........................ CATATGCCTCTAGTAAATAGTCATACGTTTCTTCGTCCGAA 1071484 24 100.0 41 ........................ CTTCTTCCCTTTCACATTTTTTATGAAGTCGTCGACCCCGT 1071419 24 100.0 40 ........................ TTGACCAGAGTGCTGAGGTCAATCTATTTAAGCGAATTTT 1071355 24 100.0 40 ........................ GATGGTTGTTGAGATTGATTAGAAGATTGAGATTGCACTT 1071291 24 100.0 40 ........................ CTAGTTATTTTATGATTAAGAATCTCAGTATCATTAACAA 1071227 24 100.0 36 ........................ TTACTGTCGCATATTTCTGACGTTTCTCATCGCTAA 1071167 24 100.0 39 ........................ ATCTCAATCCAAGAATAGTTCACCTAGCCAATGGGCAGA 1071104 24 100.0 41 ........................ TCTTGTCTGGCCACCAAACGAGGGGTGTGGTTGAGAGTTGA 1071039 24 100.0 43 ........................ TCAGAACAAACAAAGAGCGGGGTAAAAATACTACCAGGACCAC 1070972 24 100.0 40 ........................ ACAGTCTTGAAGATAATTCTTTATTTTTTTCGTTGATAAA 1070908 24 100.0 42 ........................ CGCAGTAAAAATGGCGACGCTTTTCAGGGACGACGTACTGAG 1070842 24 95.8 38 ........C............... AATTTGAATTCAACTTCAACCCTTACATTTTTCATTAT 1070780 24 79.2 43 .........CA.........G.GA CAGATACGATGCACTAAGGCACTAAACGCTACAGAGTCGTTAG 1070713 24 83.3 45 ......T..GG........A.... TAGTGCAGGATATGCCTTTCCCGCGGTATGCAAGTTCGGTTTAAA 1070644 24 87.5 0 .........C..C.A......... | ========== ====== ====== ====== ======================== ============================================= ================== 66 24 99.2 40 GTTAATCCTTCATGGAATTGAAAG # Left flank : GGTTTCTCGTACGAAAATCCACCAGGGCGTCGAGCTGCAGGACATTTGAATGTCTCGATTACGTCAAGACGTGAGGGGCTGAAGGGGCTGAGGAGGAAGAACGTGTAACCCTCGTCTCCGAGACATAGAATAGAAACCGACGCCGATAACAGCGTTCTCGATCCCTTCTGTCTTAATTGTGTAAAGGCGTTGGAAGTGGTTTGCTCCTGATACAATGGCCCTCTAAGCGTAACAAGTAGATAGAATTACTAACATTTTTTGTCTATGTGATATAGACTATTTCGCCCTTATAATTCCCGGTTTTCAGCGGGAATTACTTTCAATTTGTCAGTGAGCAATAAAGTTCTTTAGGTGGAGTACGTAAGACGTAAATCTCTTTATCAAATTCCCGAAATTTCAAGGGAGTGACAAAAATTCAGTCATGATAAAACTGTAAAGCACAGTAAAGCTTATATAAGAGAAGAGCAAAATTAAGGATAGACATAGTATAAAAACATTCA # Right flank : ACAAACCTAAATTAATTCTAAATTGTTCTTGGTTTGGCGAATCTCCAATGGAATTATGTATTTCTCGCGTTCTCTACTTACTTTATAATTTTAATCCTAGTCGAGTTCAAAATTTTATCTTATTATTATTATTTTTTCTAATGAGATGTTAATTAAGAAAGAATAAAAACAGAAAGGTTTTTAAATACTTACTTCTATTTCTTTTAACGTGGTCTGTGAGAAGTAGGAACTGAGATTTTTAATGAGGAAAGCTAAAAGTTATCAAGAGCTAGTAGACCATATCGCCAACAAGTATAACGATAAGGTAGCAATGCTTATTTTCGAGAAAATAGAATTGATTCAAAACGATCCCTTTAAATATCCTAGGGAAAAATTAGGAAAGGACATTTACGGTAACCCCATGTTTTCCATAGAAGTTACGGGCGATATAAGGGTACTATACAGTGTGGACACGAAAAACTGTATCGTATTTATTTGGGAGAACGGGTCTCATAAGGAGG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCCTTCATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 7 1369851-1364445 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024597.1 Stygiolobus sp. KN-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================ ================== 1369850 30 96.7 39 .....................G........ TATCTGGTAGGGGTTGTTTTCCAGTTGCACTTGTGGGGA 1369781 30 96.7 37 .....................G........ TGGGGAAAAGGCTGACATAAGTGAGGCGTTAAAAATA 1369714 30 96.7 37 .....................G........ CATTCATTTCCGGTTTGTCGTATTTTTTCACACATTT 1369647 30 96.7 38 .....................G........ TAGTTTTCACCACCCCCTGTACCTATTTTAATATTTGA 1369579 30 96.7 45 .....................G........ ACAAACTCATGAGGATTCCAAAAGGTTTCGCGGGCTATATTCAGC 1369504 30 96.7 36 .....................G........ TCTTCTCTTTTGTTTTCTCTCTTGATTTGTTTTTTT 1369438 30 96.7 39 .....................G........ TTTCCACTCAGACAGATTTTATATATTTTTAGGACTTTT 1369369 30 96.7 37 .....................G........ TGTCGTGAATTTGCTAAGTATAATTCTCAAGATAATT 1369302 30 96.7 48 .....................G........ ATATATAAATCTGTTAATCGTCTCAACTGATAAACAAATACAAGAGGA 1369224 30 96.7 36 .....................G........ GTTCTATAAAGTAAGTCTTTCCAGATTGTGTCCATG 1369158 30 96.7 38 .....................G........ TCCATAATTTCACGCTTAGAATAATAGAATCTTACAAA 1369090 30 96.7 36 .....................G........ CTCCATTTCAAAAGATAAAGTACAATCTCAAACTTC 1369024 30 96.7 37 .....................G........ TTTATTATGTCTATCCTCAACACCATGACGTTTCTTT 1368957 30 96.7 36 .....................G........ TTTCACCTCCACTATTGGGGTTTTTAAAAACCCCTA 1368891 30 96.7 43 .....................G........ CTACAAACTAACACTTCTGAGGAGTTAGCCTTTAGCGGGGCAA 1368818 30 96.7 38 .....................G........ CATTGAACCTATTTGTTTTCCTCCGAACCCGTCCTATG 1368750 30 96.7 35 .....................G........ ATCCTCTACAGTGAGAAATAAAAGAGCGTATAAGG 1368685 30 96.7 36 .....................G........ TTGACTGTAAACCAGAAAATGTGACTTTGAGAACAT 1368619 30 96.7 36 .....................G........ TTGTAGAAGTTTTATGATATGTATTAAGGTAATTTG 1368553 30 96.7 36 .....................G........ TAATATGCTTTATATTTTTCACAAAGCCCTTCGTCC 1368487 30 100.0 38 .............................. CACCGTTAGGCGGAGCGTTTCTAACTCTGATATATTGG 1368419 30 100.0 39 .............................. ATGAACTCAGTAATGTCATGGTCTACTTGGTTCGCCTTG 1368350 30 100.0 38 .............................. GCCGTAAGGCAAATGTCGATAGCTTGCTCCAGGCTGAG 1368282 30 100.0 40 .............................. CCCTATCATACTAAAATATATAAGTCTTTCTCTCTTCAAA 1368212 30 100.0 37 .............................. GCTCGTCATTTTCAGCCTGTCAATCCTTCATCATCGC 1368145 30 100.0 37 .............................. GTCAAGAATTACCATTGATTATTAACCTTAATATTGT 1368078 30 100.0 38 .............................. TACCGGGTTTTCTTTTCTATTTTCAATTCCTAATTGAC 1368010 30 100.0 37 .............................. GGTTTTCAATTGTAGAATAATCATTTAAAGTAATAGT 1367943 30 100.0 37 .............................. ATTGAAGATGAGAACATCAGTTCAGCCGAAAAATTCG 1367876 30 100.0 38 .............................. AAAATTGTGATGCTCCTAGAAGAAAATATACATCTCCA 1367808 30 100.0 38 .............................. GGGGGTATGGACAATTTTTCTCACCACTGTAAAATTAT 1367740 30 100.0 36 .............................. CAAGATTTCTATCATTTTTTTAGAATCTAGAAAGTA 1367674 30 100.0 35 .............................. AGATGAATTCTTGAAGTTTGATTTGCCACCATTTA 1367609 30 100.0 37 .............................. TAAAGAAACCGTATCTTGTTTTTGACGAAGAATCTAA 1367542 30 100.0 35 .............................. AAATGTGTAAATATCTAATCGTTTAACTAAAAGGA 1367477 30 100.0 36 .............................. TAACCATGAGAAAAATAGTTGATAATGATAGATAAT 1367411 30 100.0 37 .............................. CAGAAGCGGACGGTCCTAATATCGCAAGGCATATGGC 1367344 30 100.0 37 .............................. CAGAAGCGGACGGTCCTAATATCGCAAGGCATATGGC 1367277 30 100.0 37 .............................. TTCACCCTTTCCATCTCAGCATGGTCAAGTAGAAACA 1367210 30 100.0 37 .............................. TAGAAATGGTAAACCCCATGTTCGTTATGCTGACTAG 1367143 30 100.0 39 .............................. ATTTTTCTTCTTGAATGCATTCATTAGGTGTTCTCCAGG 1367074 30 100.0 36 .............................. GTAGTACTCTTCCCAGAGCCCGTAGCTCCTACTATG 1367008 30 100.0 37 .............................. CAAATTATACGGCGGTTGCTAGTTATCTTGATGAAAA 1366941 30 100.0 38 .............................. GGATCCTGAGGGAAGTAGCAGAAGAGGGGGGTTACAAG 1366873 30 100.0 37 .............................. TATAACTAACATTTATTTTTCCGATTTTATGACGTAT 1366806 30 100.0 36 .............................. AAAGCTTTTGAGGCTGGTAGGAATTCTCAATATTTT 1366740 30 100.0 37 .............................. TCAAATAAATTACTATTTCGATCAGTGAGCCGAATGT 1366673 30 100.0 36 .............................. CTTCTAACGTATTGCTCTTTCCAGACCTTGATGCCC 1366607 30 100.0 36 .............................. CCTCACCCGTGGCCGGGTCGACGAGGAAGCCCTCCC 1366541 30 100.0 36 .............................. CCTCACCCGTGGCCGGGTCGACGAGGAAGCCCTCCC 1366475 30 100.0 35 .............................. TTTATGTAAGACGTCATGTACCTTGGCTACATGGG 1366410 30 100.0 36 .............................. TTCTTTTGAACTCTTCTTCTGAAATTGATACCATCA 1366344 30 100.0 37 .............................. ACGGTGAGCTATACGATTTAGTCATGTACTATGATCC 1366277 30 100.0 36 .............................. AGGTGCCGGTGAAGTGTGAGTTTGGGTATGATGTTT 1366211 30 100.0 40 .............................. TATTGTATAAATATAAAATTGCAAATATTATAATTTGAGA 1366141 30 100.0 36 .............................. TCAAGAAGAACCCACGGTTCAAACCCGTTTCCAGTC 1366075 30 100.0 37 .............................. GGTGACGAGGAGTTCACCGCCCTTTCCGCACACCAAG 1366008 30 100.0 36 .............................. CTAATTTTTATAAGTGCATATCTTTGATTTTCTTCA 1365942 30 100.0 36 .............................. TAATCTATAGTCATTTCACATCACCTTCGCGTTTTG 1365876 30 100.0 36 .............................. TATGATAGCACTACTTCCGGCTCACCGTAGATATTC 1365810 30 100.0 37 .............................. AGAGTCAGGGAAACTGATGAAGGTAGTGTTATAGAAT 1365743 30 100.0 36 .............................. TCAGCTGATACGCTATAGCACCTCCGCTACCTACCG 1365677 30 96.7 38 ..........T................... AGGATACTATACTCAGTCTCTGCCGCACCGAGCATCGA 1365609 30 96.7 36 ..........T................... TATGGTCATACGTGATAATATCTGGTGAAGTATAAT 1365543 30 96.7 38 ..........T................... CTTTTTCAAATTTGTACAGAGTGTAACCGCAGTTCCTA 1365475 30 96.7 38 ..........T................... TTGCAGCTTGTGAAACAAATCCCGAATTTAGATCGGAA 1365407 30 96.7 37 ..........T................... GCAATACATCACACCCCTCAATTTTTGCCCTCTCGAT 1365340 30 96.7 37 ..........T................... GATAAGACAGTATTTAAAAAAGAAAACGGTGTACTAT 1365273 30 96.7 37 ..........T................... CGAACTCCTCATCAACTTAACCCTTGATTATTCTAGA 1365206 30 96.7 38 ..........T................... AGTAAGCAGTAAAAGCGCAAGTGTTGGATCCCAAGCTA 1365138 30 96.7 36 ..........T................... TAGTGCACTCCTCCGCCATCGGGGATATATCGCTTT 1365072 30 96.7 39 ..........T................... GACATACAGTTCATATATGTGTGGGCTGAAAACGAGGAC 1365003 30 96.7 39 ..........T................... TTTCGTCCTTTCTTTTTATGAAGTCCTCTAAGTCCTTCT 1364934 30 96.7 35 ..........T................... ACACTCCATTTACCTTAGCCCTAAAACACCTTCTC 1364869 30 96.7 36 ..........T................... TTTTGAACGCTGCTAAGATACCTCCTACTCCTAGTC 1364803 30 96.7 35 ..........T................... CTCTTGCCATCCTAATTCCCTCTTAATGCTTTTCT 1364738 30 96.7 35 ..........T................... GTATATATCGTTCTGTGATAGGGTCATAATACATT 1364673 30 96.7 35 ..........T................... GATGGGATATCAGCGATAATAATTCTAGTACGATT 1364608 30 96.7 38 ..........A................... AATAATATTAGAGCTTATAAAAAATACCAAAAATTCGT 1364540 30 96.7 36 ..........T................... TGGGAGACAGTAGCGGGGCAAAGAAGTTCTAGGGAG 1364474 30 83.3 0 ....A.......G....A.......AG... | ========== ====== ====== ====== ============================== ================================================ ================== 81 30 98.2 37 GTTTGTAGCACTCCCTTGGGGACTTGAAAC # Left flank : GAAAACTAGGGGTCTTTCACGGTCCTATGCGGTTTCTATTTGCCTAACGATAATGAGATTATTGCCATTAAATATACACTTAAACAATATTAATACATAGTACGTGTAAAAACGTGAAGTGACGAGTTTATAATTTAGTTTATTTAGAATGACCTTAAGTATACTGTATTATTTATATACTAAATTATACCAATTCAACGGAAGATCAGTTAGTACTCATTTAGGTTATTTGTACATTAGGACTATTACAATTCGCAAAGGAGCCGTGAAATCCCATTACGTCCGACCCGCATATTTATTCTAATTCTATATATATTTATTCATTTTATATGGCAGGGAGTGAGATCGGCAGTGAAAGGTAAAACAAAAATATTACAACTAAAACATATTTATTTTTACGTAAAACTCCCTCGGCAGTGAAAGGTAGCTTTAAGGAGCGGTAACGCTGCCGGAAAACAGCAAAACTTTTATCAACCTAGAAAACATATAATACAAGAGGA # Right flank : TCAAATATAGGAAAAAAGGTAACTTCGGTTGGGAGTGTTCTCAAATGCCGATTAGATTCTACAAAGAATTAGTACTAAAAAACAAGATTATTCTTAAGGGCTATTCTATCTAATACTATCTTGGGAGAGGTTTAGAAGGAGGGACAAACATACTTTAGTAACGTTTACTAGAAGGGGTTACGAGGTTTTATGTGGTTCCGTAAGATGGGTCTTACGACCCTTGCAAAATTAATACTCTTAATTTCGAGGAAATGGTAGTTACCCTGTTTTCCTTAACAATACGAACTGACTGATAACACTTATAAGGTCTTTAGGCTTTACTTCAGGTCAGCTTAAAATTCTGGTGCCAAAAGGGAACGGACACTGCAAAGTGAAGGCTAAGCTTCACGGGGTTAACTGGCCGGTAGATCAAGGAGGGCTCCTCTAACCCGTTGAAACGCGTGTGTGAACTTAGGTGTTCACTAACTGGCTTCCCTCCTCGCCGCTCCTCTGACCCGTTG # Questionable array : NO Score: 2.93 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCACTCCCTTGGGGACTTGAAAC # Alternate repeat : GTTTGTAGCACTCCCTTGGGGGCTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-3.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 8 1421080-1430374 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024597.1 Stygiolobus sp. KN-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 1421080 30 100.0 35 .............................. AAATCGCAATATGGCCCGACTATACACCGTTGAAT 1421145 30 100.0 39 .............................. CCTCAGCATCAAGCCAAATACTTTCTCTAATAGAGCCGT 1421214 30 100.0 39 .............................. TTTTCGAGATTTATCTTTACTTCTACCTCGTCATTATGT 1421283 30 100.0 39 .............................. CCCTTTTCCTTAAGGCAATAGAGTCTGTGTTATATCAAA 1421352 30 100.0 37 .............................. CCTCTTCAATCTTCTTTTTCTCTTGCTCTTCTTTCTG 1421419 30 100.0 37 .............................. ATAGAAAACAATTTTAGATTTTCGAAACGGCAATATA 1421486 30 100.0 37 .............................. GGAAATTACAATTAATCTGTCATTTTGCGAAATTTTG 1421553 30 100.0 35 .............................. CAAGATTTCTATTATCTTTTTAGAATCTAGAAAGT 1421618 30 100.0 35 .............................. CATGGACACAGAAAGGTAAAACATACTTTATAGAA 1421683 30 100.0 35 .............................. ATCTGTCATTTTGCGAAATTTTCGCAAAAAATGAG 1421748 30 100.0 37 .............................. TATATAGCATCTACCTGTTTTTTAGTGGCTCTTAATT 1421815 30 100.0 36 .............................. TTAGGTAATATCATTGGAAAAATAAAAGATTCAAAG 1421881 30 100.0 37 .............................. GACCCCACGGGGACGGGGAGTTTTTCCGGAAACCCCG 1421948 30 100.0 37 .............................. ATAATAGAAATGTCATAGCTGTCTTTCTATCTTCATC 1422015 30 100.0 37 .............................. TACCCCATAAGTTCTAAAGTGTCTTGGTTCGGTTTGA 1422082 30 100.0 37 .............................. CTTTAGCAGGGGAAAATAATGCCAGGGCAATTAATGC 1422149 30 100.0 38 .............................. TAAAAGTTAGTATAGTCTAAGCGATAACTCAGTTCATC 1422217 30 100.0 39 .............................. CAAATATTGTCCACGGCTTCCTCCACGTTTTCACTGGAC 1422286 30 100.0 37 .............................. AGCTTGCAAGCATTCCTAAAAGAACCTGATGAAGTGA 1422353 30 100.0 40 .............................. GCGTTAGCGTGTGTTAGTGTTTGTGTGTGCAAAAAGCCGG 1422423 30 100.0 38 .............................. CTCAGTCCTCAGCACCTCCATCTCTTTCTCTGTTAGCG 1422491 30 100.0 38 .............................. TAAAGAAATGGTCTACAAGGTCAAGTTAAATAATCTAG 1422559 30 100.0 37 .............................. TTGATACTGAAAAAGTGAAAAGTGCAGAAGTGGTGCA 1422626 30 100.0 40 .............................. TATTTTCAACTAGAAGATAAAAATGCCAATATGTCACGAC 1422696 30 100.0 37 .............................. GCGTTACGCTAGCAGAGCTACTCCCACCATTCGCCAC 1422763 30 100.0 37 .............................. TTTTTCCCGGCGGTAACAAATCGACATCTAAAGTTTT 1422830 30 100.0 36 .............................. TGCAAAATAATTTGTTTCAACAAACCAAAAGCCAAT 1422896 30 100.0 38 .............................. GCTCTTCACCCGTCAGCTGACCAATATAGATTTCTTTC 1422964 30 100.0 36 .............................. AGGTAAACGTATACATAAACCAGGAGATACTTAACA 1423030 30 100.0 37 .............................. ATAAAGTTCGGAATTTCATACATAGTTTCGGTGGACG 1423097 30 100.0 37 .............................. ATGGTGGCGGTACCATGTCCACTAAGAGCCTTTTTAT 1423164 30 100.0 38 .............................. GCAAGTGATGATAGAGAAGTTTTTATTGATTTATCTAG 1423232 30 100.0 37 .............................. ACTTTAGGGGTTTGAGGTTTGGACGCCATATTCGAAC 1423299 30 100.0 35 .............................. GATATTCAAAGATAGAACAACTATAACAATATTTC 1423364 30 100.0 36 .............................. TTTAAGTGGATACGGTAAACTACTCATATGTAAAAA 1423430 30 100.0 36 .............................. TCCTATCGACGAATTCCGAGTGCTCGCCGAAGCCGC 1423496 30 100.0 37 .............................. TTTCTGTCAGCTTGCTGAAATAAAATAAGATTGTTAG 1423563 30 100.0 39 .............................. CGAAAACATAAAATATACTTGGGGCGTCAAAAGTCCAGA 1423632 30 100.0 37 .............................. TAGAATAAGTATCGGCTCACTTCGCTCGTAACTTAAA 1423699 30 100.0 36 .............................. TCAAACATGATAGAAAGAAAGAAAGAAAAGAAAAAT 1423765 30 100.0 39 .............................. GGTACTCTGTTGTTCTGTCCACCGAACCACACAGCCGGG 1423834 30 100.0 36 .............................. CTCTATCCAGTATTAAAATTTTAACAAACTCGGCTT 1423900 30 100.0 40 .............................. ACTAATAGTCAGCTCACATGTCCCATACCCTTTGTGGTGT 1423970 30 100.0 39 .............................. CCTTTCCTCTGGTCTCTATCTCTATGTGACTCTTGAAAT 1424039 30 100.0 38 .............................. TCTTCAGTAATGCCCGATCTTAAAGAGGTAAGGTATTT 1424107 30 100.0 36 .............................. CTAACAAAGCCAAAATCTCCCAATCTTCTTCTGTTT 1424173 30 100.0 36 .............................. GATTTAAGTGCTAAAGTACAGTCCATGACAATTCTC 1424239 30 100.0 37 .............................. TAGTGAGAAACCATTATACTATAATTGCCTTTAAATT 1424306 30 100.0 39 .............................. TTGAAGGCTTTTTTCCAATACAATCTATAAATATACCTC 1424375 30 100.0 36 .............................. CAATTCTTCATAAAGTTGTCAGAATAGGGGACGAAA 1424441 30 100.0 36 .............................. CTGGAAAAGTTCTACACATGAAGAAGGTGATCCTAA 1424507 30 100.0 36 .............................. CAAAAGAAATCGTCTGACTTTTCACGATCGTAAACT 1424573 30 100.0 37 .............................. TCATAGCAAATTTAGGATTTGTAGTCTGGATAGTGAC 1424640 30 100.0 36 .............................. GTTCAGCTCTTTTTTATGCCCTTATTGAGACTGAAC 1424706 30 100.0 37 .............................. ACTCATCATTCTTTGACACTCTCGGGAAATAGTAGTA 1424773 30 100.0 36 .............................. GAAACAAGAGTTCAATAGAGTATGTGACCAAAGTGA 1424839 30 100.0 37 .............................. AACCTCTCACTTTGCACAAAAAGTGCTAACTCATCAT 1424906 30 100.0 40 .............................. TGCTAAAGCAAAGAAAGAAGGCAAATCCTGAACAATGGGA 1424976 30 100.0 37 .............................. CCGATAATTTATGCCGGAAACCCAATGAGTTACACTC 1425043 30 100.0 35 .............................. TACCTGTTGATGGTGAAACGTATACCTCCTCTTGA 1425108 30 100.0 36 .............................. AAAGTAATTGTTTTATTTCGTCCGGCAACTTGAAAA 1425174 30 100.0 36 .............................. CACTCTTTCTCAGCATTTCCGAAAGGTATGAATTCG 1425240 30 100.0 38 .............................. AAAACGTCTACATAATATATATCAACAGAAACAATAAT 1425308 30 100.0 38 .............................. GCTTTCTCCAGAAGTTCTTTTGTCTCCTGATCAAGTGA 1425376 30 100.0 35 .............................. TTTTTTTGAGCTGAAAACTTGTTTTTCACCTAAAC 1425441 30 100.0 42 .............................. CAAACTCTCTGAAAGTAGTCACAAGTTCTTCATTTACGTCTT 1425513 30 100.0 38 .............................. TTCTTCATCAAGATGCCAAAGTGTTTAGTGATGATAGG 1425581 30 100.0 37 .............................. CGTAGACATAAACGTGAGTTACAGCCCTTTTTGATAA 1425648 30 100.0 39 .............................. CTAAAGTATTTGGATGCAATAGAAAGCCCACCAGACAGC 1425717 30 100.0 35 .............................. GCTTTCTTGTACATACCTCACGCCTTCTTTGATAA 1425782 30 100.0 37 .............................. TTTGGGTTTTGTTGCTGTGGATATTGAAAGTATGGGT 1425849 30 100.0 38 .............................. TCGAATATAACCCTTGTCGGAAACTCGTTTATCATGTT 1425917 30 100.0 36 .............................. CCCCCATTTTCGTAAGGTAATATCCATTATTTTTTA 1425983 30 100.0 36 .............................. TTCAAGTTCAAAAACTACAAGTTTTTTATGAGGCTG 1426049 30 100.0 38 .............................. TAGTTATTAAAATAAAATTGTCTAGTAATAATAAAGAC 1426117 30 100.0 38 .............................. CGTTGTGTACTAATATGTACCGTTCTGTGATATAGTCG 1426185 30 100.0 38 .............................. TAGTTATTAAAATAAAATTGTCTAGTAATAATAAAGAC 1426253 30 100.0 38 .............................. CGTTGTGTACTAATATGTACCGTTCTGTGATATAGTCG 1426321 30 100.0 38 .............................. TAGTTATTAAAATAAAATTGTCTAGTAATAATAAAGAC 1426389 30 100.0 38 .............................. CGTTGTGTACTAATATGTACCGTTCTGTGATATAGTCG 1426457 30 100.0 38 .............................. CGTTGTGTACTAATATGTACCGTTCTGTGATATAGTCG 1426525 30 100.0 38 .............................. CGTTGTGTACTAATATGTACCGTTCTGTGATATAGTCG 1426593 30 100.0 39 .............................. GCAATTTCTATAAATAACCCGTCTCTAAGTAATTTCGGT 1426662 30 100.0 37 .............................. AATTTGCATAAATTTCGTAATATTTAAATAAATTGAA 1426729 30 100.0 37 .............................. TCTAAACAGGGGAGGTCAGCAAAGCCCAACAATTCCA 1426796 30 100.0 39 .............................. CCAAGAGGTGATTGAGTAATGTCCACTAATAGCGTTAGT 1426865 30 100.0 37 .............................. GCTTTCAAATCAGCAAGAGAAATATTAAATCGAAAAC 1426932 30 100.0 36 .............................. CTCGCCATCTTCGTCACCCGCGTAGTCTGCTACTAA 1426998 30 100.0 36 .............................. AGTTTTCTCCTAGTATCGTAGACGGCGTCCTCTCTT 1427064 30 100.0 36 .............................. TAAAGTGGAGTGTGATAGGTAATAATTGGGGATAAG 1427130 30 100.0 37 .............................. GGCTGACCCTATACTTGTCAAATAGTGGATATGCAAG 1427197 30 100.0 36 .............................. GAGAACAGGGGCGATGTGGATAAGATTTATGAGAAG 1427263 30 100.0 37 .............................. CTAAGGCGGAAGAGCTAAGCAAAGTAGACAGCGCTGC 1427330 30 100.0 38 .............................. CCCCACTTAGTAAATAAAAATTCAAACTGAAACAAATT 1427398 30 100.0 36 .............................. TTCTGCAGCTTTGTTATAGTGTCAATAGCTTTAGCA 1427464 30 100.0 41 .............................. CCGGTGTAATAATAAAGGCTACGAAGGATCCAGAGTTCCGT 1427535 30 100.0 36 .............................. ACCAGCAAAAGGCACTCATATCAAAATTCTTTGAGA 1427601 30 100.0 37 .............................. CCTGGTGTTGCCGCTAATGTTATTATCCTTGTTATGA 1427668 30 100.0 40 .............................. CAATTCCGTATTCGTCTTGCTCAACTAAGATTATTCTGAC 1427738 30 100.0 37 .............................. GTAAACTCCCCAGTTTCTCTCCTTAACCTATCCAAAA 1427805 30 100.0 39 .............................. TCTGAAAGTTAAGAAAAATTATTGATAATGTTAGACAGT 1427874 30 100.0 35 .............................. ACGGGGGCAAAAACCAAGACCTTCTTTTTTTAATT 1427939 30 100.0 35 .............................. ACGCGAGGACTGTTAATACTTCTTGTTGAAACGAG 1428004 30 100.0 38 .............................. CTCAGCCTGGAGCAAGCTATCGACATTTGCCTTACGGC 1428072 30 100.0 37 .............................. CCTAATGCTAATGCTTTTCTATCTGTATTATTTTCAG 1428139 30 96.7 36 .............................T GCTAACTAGATGAGAAAATAGAAGAAGAAGGAGAGG 1428205 30 100.0 37 .............................. CCACAAAAACTTGGCTATCTCGTCTCTCAAGAAACTT 1428272 30 100.0 37 .............................. CGGTTGTTGATTTGGTTAAAAAAACTTTACCCCGCCT 1428339 30 100.0 36 .............................. ACCGGCACTTTTATACCGAGTCCAAACGGTTTTAAA 1428405 30 100.0 39 .............................. TTGCATACGCATATACACTACTCACACTAATTCTATCCG 1428474 30 100.0 37 .............................. CCTGGTGTTGCCGCTAATGTTATTATCCTTGTTATGA 1428541 30 100.0 36 .............................. GGAAACGTGTAGTTCTGTAGTTTGAGCCCGTCTTCA 1428607 30 100.0 38 .............................. ACGAATCTGGTCTCACTTCCTCCACCTCTTGAGAAGCT 1428675 30 100.0 36 .............................. TTCACTTTTCAATAAGTGAAAAGAGTAAGCTAATAT 1428741 30 100.0 36 .............................. TAGAGAAGATGGAGGCTGAGGACTGATGTCAGCGAC 1428807 30 100.0 38 .............................. CTTTTCCATATAATGCGTAAGCTTTCTCTAGATGTTGT 1428875 30 100.0 35 .............................. AAACCCCGAGGAGGATGACGAAAGAAGACAAAATA 1428940 30 100.0 39 .............................. TCATAGTACCAGCAGGTACATACTCATACATCATCAGAG 1429009 30 100.0 37 .............................. TATATATACTCATCACCGCTCAGTGCTGAGCGGATAG 1429076 30 100.0 36 .............................. AAGTTTTCCTCTCTTTTTCTGTGGAGAAACTTTTAG 1429142 30 100.0 37 .............................. TCGAACGACACTACTTGTTGAAGGACATAAAATAGGA 1429209 30 100.0 40 .............................. GACTTAGTGACTTCGTTAGAAGAAGGAGAACAAGTCAGGG 1429279 30 100.0 35 .............................. GCGAGCTATCACTACACTAAGACGAAAAGACATGG 1429344 30 100.0 36 .............................. CGATTATTATCCTGGAAACACCAGGATAACTGTAAA 1429410 30 100.0 36 .............................. TGAATTCAACTGACTTCTCGTAATAGAACTTCAGAG 1429476 30 100.0 38 .............................. TCACTCCAAATTATATAATATTTGGTGAATTTTTACAG 1429544 30 100.0 36 .............................. CGATTATTGCTATTATGATCCAAAAGAGGGGGCTAT 1429610 30 100.0 37 .............................. ACATGATCTTCAGCAGGCTCGAGAGCTTCATCAATTC 1429677 30 100.0 36 .............................. GAAGAAGTCAAAGAGACAATGACGAAAGTGAGCCAA 1429743 30 100.0 36 .............................. ATCTAGCAAACCCTGAGAGCGTCAGTGCGATCGGCG 1429809 30 100.0 37 .............................. TGAAGGCGAAATCATCTACGCCCTAGCGTTGTTAGGG 1429876 30 100.0 37 .............................. TGTATGTTTCACCGTGAGGTGCTGATGACCATACCGT 1429943 30 96.7 37 ..........A................... TGAAGGCGAAATCATCTACGCCCTAGCGTTGTTAGGG 1430010 30 100.0 37 .............................. TGTATGTTTCACCGTGAGGTGCTGATGACCATACCGT 1430077 30 96.7 35 ..........A................... CACTCACGCAAAGCGTATGCACTCACTGTAGTGAG 1430142 30 96.7 37 ..........A................... AACCCGTAAGGTTTTAGTTTTTCACAGTATTCTGGCT 1430209 30 96.7 41 ..........A................... TCGTAAACAGCAAAACCGTAATTGTCGTAACTCACTATGAC 1430280 30 93.3 35 ..........C..............A.... GATAGCTGTATAGTGCTTGTCCTCCTAGACCTGCT 1430345 30 76.7 0 ..........C...A........AAA.CT. | ========== ====== ====== ====== ============================== ========================================== ================== 139 30 99.7 37 GTTTGTAGCATTCCCTTGGGGACTTGAAAC # Left flank : CACCACGTACTGTTATCCCGTTTCGTGAATTAGTACAGTTGGCAGGGCAAACAATACGCTAAACACGAGGTATGCATCACACTAAGCCATTAACTGTCCTTAGACTTCTTCACAGAAAACGGAATATACGTCACGAGGTAGGAATTAGACCAAGCCATTAACCCTCACCTTATGCTTTTACCCTGGGTCACGTAATAACATCGTCGTGCGTTAATTTAACTATGACGACCTTACCTCATCTAGACAAATACAAGCACGAGGAGCAGTGAAATCCCATTACGTCCGGCCCGCATATTTATTCTAATTCTATATATATTTATTCATTTTATATGGCAGGGAGTGAGATCGGCAGTGAAAGGTAAAACAAAAATATTACTACTAAAACATATTTATTTTTACGTAAAACTCCCTCGGCAGTGAAAGGTAGCTTTAAGGAGCGGTAACGCTGCCGAAAAACAGCAAAACTTTTATCACTGTAGACAGCATATACCACTAGAGGA # Right flank : CCGCCATAAATTTTCAGCCGATAACAAGTGGCTAGTGACGTGAGCCGTTTATAGGGGGTCTTTCATGTTTTCGTTTCAAGTTGAAACCAGCACCGCCAATGACCCCGCCCATATGGTCACTCACATCTCCGTTTTAATTGAAATGATCTCTCTCAAATTAATATAATTGGATTTAACACTATTCATGGACTACATACACGACCTAACTTCTTTTAAATGACCTATTCGACTAAAGTCGTGGCCCCTGTTGACCGCCTTATCAGCTTTTTAGTATTGATTTCACCCATCACGTGTAATTAATGATGATGATTAAAATACCGCTCCGTCAAAAATACAATTAGGGTTACAACGAGTTCACGGGCAGCCCTTATCGGTAAAAAACGGGATATGGTGGTAGGGAGGAGGGATGGAGGAGGAACTACGTTCCCGATAAAAACGCTATGGGTTTACCATATCAAGGCACCCTCGTCCTTCCTAGCTTTAAAACCGGTGTCAGGGTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCATTCCCTTGGGGACTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.80,-3.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 9 1440858-1446657 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024597.1 Stygiolobus sp. KN-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================================================================================================================= ================== 1440858 30 76.7 185 ...C..G.TT.........A.A...T.... AATACCTGAAAGTACAATATGGTACATGGCGGGGCAATTAAGATACGCCCCACGACTGAGATAGGATGAACGGCTGACACACAGAGCCCCGCCTTACTATTTTTTGTACTTTATAACTAATAACTTTAACCCTCTGCCCAAAACTCAAAAATTTTAGTTATGAGAACTTGCTCTCACGGTAATGG 1441073 30 93.3 36 ........T..........G.......... TACTTCCAAAATTGTAGTACTTTTTTCTCGTCTGAA 1441139 30 100.0 37 .............................. CGAAATTGATAAGGGTGATCGAAGAGTGGACGAGAGG 1441206 30 96.7 35 ........T..................... GTCTCAGGTATCATGTTAGTAATTTCGGGAAAGAT 1441271 30 100.0 37 .............................. ACGGGTTAAAAAGCAATTCTGTCAGACAGCTGTCAGA 1441338 30 100.0 36 .............................. ATTCGTCGCTGTTAAATACCCTACCAAAGAACCCTT 1441404 30 100.0 40 .............................. CTGGTGAAGAACGAACTTGAACAGGGTATAGAAATGATGA 1441474 30 100.0 37 .............................. TCGTTTCGAATGCACCTGAGATAGACTACTCAATAGT 1441541 30 100.0 36 .............................. AACAAGAAAGAGATTAGCTTTTTACTTAGGAATTGG 1441607 30 100.0 37 .............................. TCGTTTCGAATGCACCTGAGATAGACTACTCAATAGT 1441674 30 100.0 37 .............................. CTAAAAAGTGCGAATTTGCTATAGTAGTGTTTTTTCC 1441741 30 100.0 37 .............................. GGTCTATTTCACTTATTATCTTACTTACTATTTCAAT 1441808 30 100.0 37 .............................. TAAGATATGAGTGAAGAACAAGTTAATTCGCAAGAGG 1441875 30 100.0 36 .............................. AACTGGTAGGGGTTTACTGGTGACCATTTTATTATG 1441941 30 100.0 35 .............................. ATGCAATAAGCTCAATTACAAAGAGAGTGTAATAA 1442006 30 100.0 39 .............................. TAATTGAGTGATAAAAAATGTCCGAAGAGATAAATGAAG 1442075 30 100.0 34 .............................. ACTTCACCAGACCATGAAGAACAGAGGTTATCGC 1442139 30 100.0 37 .............................. CTCCTTACTCGTCATTTTATACCCCACCTCTTTCCTG 1442206 30 100.0 37 .............................. AGTATGACCCCTACATTTACGTCATTGACCCTATGAA 1442273 30 100.0 37 .............................. TATCATCATTTGAAAAACTGTAAATTTCTTTATCTGA 1442340 30 100.0 36 .............................. TAAACCTCAGAGAGCTGAAAGGCAAAATAGTCGTGA 1442406 30 100.0 40 .............................. ACTTTTGATGAAGATAGAAAAACTGCAATGACATTTCTAT 1442476 30 100.0 37 .............................. TATATTCCTCCTAATTTTTGAATATCTCTTTGATCGA 1442543 30 100.0 38 .............................. TGAATATTGTGTGAAATGGTAATACGTAAGAGCAAAAA 1442611 30 100.0 35 .............................. ATATAATAAGCTTTGAGACCGTTCACCATATTTGT 1442676 30 100.0 36 .............................. GCCAAGTCCTTGTACTTTTTAGGTAGTTTTCTGTAG 1442742 30 100.0 37 .............................. GGATAATATGGAAGATGGCTAAGGATAAGGTAATTCT 1442809 30 100.0 37 .............................. ACGTAGTGAACTTGGTGCTTAAACAAATGAAAAATAT 1442876 30 100.0 39 .............................. CTCCACGATGGGGGGCATCGCGTCCGCCAGGAGATCAAC 1442945 30 100.0 40 .............................. ACGTGCAAAAAAGATGATGACCCTATCGCAAATTTAGGGA 1443015 30 100.0 36 .............................. ATATCAAGGTATCCTATTTTAACGTAGAATTTTATG 1443081 30 100.0 36 .............................. TGTAAAAATGCCGTGGAGTGAGGCTAGAAGGATTGA 1443147 30 100.0 37 .............................. CCTGGGTGACGACAAACCCTTTGGAACAGCGGTCTGT 1443214 30 100.0 36 .............................. GTGAAGATGATAGCGATTTGAAACCTATGATTTGTG 1443280 30 100.0 38 .............................. TGCAAATCCGTTAGTAGCCTTAATATTAGTGCTTGCGA 1443348 30 100.0 37 .............................. ATTTACAGGACTGCAAGGGCTCTCAGAACTAGCATGA 1443415 30 100.0 36 .............................. AGCAATGAGGGTTATCAGTCCCTCCACGTCTCGGTT 1443481 30 100.0 37 .............................. ATCATGAGGTGGGAGTATTGGAGCAGGGCAATGGAGT 1443548 30 100.0 36 .............................. TTTGTAACAAAGTCCACGATAGCCCTATTAGTACGT 1443614 30 100.0 35 .............................. ATTTTTGAGACGTCAAAGGGCTATTACCAAAATGG 1443679 30 100.0 35 .............................. ATCTTCAAAAATCTATTTGAAGAAAAACTCAAATA 1443744 30 100.0 37 .............................. CCCTGAAGAACGGGAGAAAAATAGTGTTTGGTGAGGA 1443811 30 100.0 36 .............................. TGAGGCTGAAAAGTTCAGAGAAGTTGCCAAATTCGG 1443877 30 100.0 35 .............................. ATTGTATTATCGATTTGATTGAGTTTGTTCTGGTC 1443942 30 100.0 36 .............................. TCCATGAGGTGGGAAAATGAAAGAGCAAAAAGTATC 1444008 30 100.0 36 .............................. GTAACTCAATAGCACCCATATTTGTATCAACACCTG 1444074 30 100.0 36 .............................. TTTAATCAACATGGTCTTCTTCTTCTTCTCTTGTAA 1444140 30 100.0 39 .............................. TCCTAAGAGTGATTTCCACGGTAGTTCCCTCAGGGTCAA 1444209 30 100.0 38 .............................. TTTTGATTAGAATCTATTTCTACCTGTATGCTATTAAT 1444277 30 100.0 35 .............................. ACAAGCGGGGGCATCGCGTCAGCTAAGACGTCGAT 1444342 30 100.0 37 .............................. CCTACACAATTTTAGCTTATGCCACAAATGGACAAGG 1444409 30 100.0 38 .............................. CAAAAGCTGTAGTTGAAAAGCTCAAATTCCAAGAAATA 1444477 30 100.0 36 .............................. TCTTTATCTTTCTTCTTCATCTCAAATCACCGGGGG 1444543 30 100.0 36 .............................. TTAACGTTACAAATTTCGGAGAGGCGAATGCAAACA 1444609 30 100.0 37 .............................. TTAACTGGGGGGTTAACAAAATACATATAAATGTCTA 1444676 30 100.0 37 .............................. ATGAGCGGGAATTCAAACCCAAATATAGGTGTTTTTT 1444743 30 100.0 38 .............................. TCTATAGAACGATTTATTACCTTTATTCCCTTTTCTTC 1444811 30 100.0 38 .............................. CTTAACGGCGATCCCAGTGACGCGTATTATGAAAGATA 1444879 30 100.0 37 .............................. CACAGGGACACTTAGAAGTTTACTTAATTCCAATCCC 1444946 30 100.0 40 .............................. CTTCAGGTTATGCGGGTTTATATGGCGGGGGTTTGGGCTC 1445016 30 100.0 40 .............................. ATAAAGCAAAAGTTAGAGCAAAAATTAGGCTATCTGTCAT 1445086 30 100.0 37 .............................. AGAGATGAAATTTCAAAGTTTTTATGCAATCACAAGA 1445153 30 100.0 36 .............................. AAAACTTGTGCCTTTGGAAGTTTCTGTACATACTCC 1445219 30 100.0 36 .............................. TACTGAAACAGCTATTCAAATGCAAAGAGGGCTGAT 1445285 30 100.0 38 .............................. AAATCCACGGAACGCATTATATGCTATCGAAGCTGCAA 1445353 30 100.0 37 .............................. TATATAAAGCTTCAGGAATTCCGAGTGTTCCACTTCC 1445420 30 100.0 38 .............................. GAAAATGGTGACAATTAGTATAGAATGGTCACAACCTG 1445488 30 100.0 37 .............................. ACATTATATTATATTTTCTATATCATCTCTATTTCAC 1445555 30 100.0 36 .............................. AACCTCCACCCTTTAGGGTGGGGAGGAAGTCAAGGA 1445621 30 100.0 36 .............................. ATTACTTTATTCATGTTTAATCACTTTTTGCTATAG 1445687 30 100.0 42 .............................. CCAGAATATTGGCAAGAAAAACAGGTATTCAGGAGATAGAGC 1445759 30 100.0 36 .............................. AGATTTCAACTCCAAACTGTAGAGCATATTGATCGA 1445825 30 100.0 36 .............................. GTCAAAAAGAGATGGGTAATCTAGAGAGAAAAACAT 1445891 30 100.0 37 .............................. GAACACTCTCACTATGTACATATGCACATCACATTTT 1445958 30 100.0 38 .............................. TGAAAAAAAAGATGAAGTAATAAAAAAAGTGATAGAAA 1446026 30 100.0 36 .............................. AGGCGAGAGGAATTTAGCTGTTGTAGTAGCATTAGT 1446092 30 100.0 35 .............................. ACACTAATGAATATGTAGATGTCGCTGAAATGTGT 1446157 30 100.0 40 .............................. CCGAAACTACCGATTCCAACAGAAGTCCAACTACTAGCTG 1446227 30 100.0 38 .............................. AGGTACGGTCTACCAAAGTTTGACAAAGCACGGCTCAA 1446295 30 100.0 37 .............................. GTGTTTTTAACCAAAGTGAGTTTAATAACGCGGTGAA 1446362 30 100.0 36 .............................. GATAGTCTCACCGTGTTATTTCGCGTTACACAAAGG 1446428 30 100.0 37 .............................. CTATTGCGGTAGACCTTACGACAGCGGAAAAAATTCG 1446495 30 100.0 37 .............................. AATTTTTAATCTAGAACAGCTATCGTAGTTTTTTCTA 1446562 30 100.0 36 .............................. TTACGTTGAAGACTTTTGAAGAGGTCTATACATATC 1446628 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================================================================================================================================================================= ================== 85 30 99.6 39 GTTTCAAGCCCCCAAGGGATTGCTACAAAC # Left flank : GTTTTGCACTTGTATTTTGTTTTTCCTCTAGCTGATCGTCCTTTACTACTCTGTTTGATTTGCACGAGGGGCAAGGTGGCCTTTCTTCTCTCCTCCTCTTTACCCCGAGTTTTTTAGTGTAGTAGTATAGTGTTGATGGCGGTATCCCTAACTTGGTGACTTGTACTCCGAGTATGCTGCTATTGTGTAAGCGAGGTCTTCCGGCTCGTGTTTTCTCGGCTTAAAATTTAAATCCCTTAGGGTTAAAAGTATTAATTGTGCAAGGGTTACGAGGTCCATCTCGTAGACCCCCTTAAAATCTCGTGACCCTTGCACATAAGTGTTTCTACAGTAATGTTTGCTCTCATTACTTCTAGCTCTTTCCAGCAAGTAGTAATAGAAAGGATAGTTTTTATAAATACTCTATTATTTTTACAAATCCTTATCGAATTTGGTGACTGTTTGAGAACACTCCCTACTACAAAAGAGAGGCTGATAGCGGGACGGCACGCCACCCTAGT # Right flank : CTCCTCTTGTATTATATGTTTTCTAGGTTGATAAAAGTTTTGCTGTTTTTCGGCAGCGGTACAACGCCTTAAAGCTACCTTTCACTGCCGAGGGAGTTTTACGTAAAAATAAATATGTTTTAGTAGTAATATTTTTGTTTTACCTTTCACTGCCGATCTCACTCCCTGCCATATAAAATGAATAAATATATATAGAACTGTAACAAATTAAGGACTGTGGTGTGGGAGGCGTTATAGGCGTGTTTTTTTATTTTTGTTTTTATTTTTGAATTCACTTGTCCTGATTACCCGAATCGGAAAATCGGTCGTAAATATAGGGTGTTTTACGTCCCAAGGACGGTCCTCGGTCGCTATAATTTCTGTTAGTCTTGTTGGGCTGTTTTAACTGTTAACTAGACACGGGGCTGAATTAATACTGGGATACTGATAGGAGAGCTAATAACGCGATCCTACTTCGGTAAGGCACAGTGTCTAATGGGGGACTTGTCGTTTTATCAGCG # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAGCCCCCAAGGGATTGCTACAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA //