Array 1 1055-2183 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYWG01000025.1 Salmonella enterica strain BCW_6268 NODE_25_length_59509_cov_3.77911, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1055 29 100.0 32 ............................. GCAACACAGGGTTTAACCGGTTCCCTGGCGCT 1116 29 100.0 32 ............................. GATGCTAACCACTATTTCATCCGCCTCGACGA 1177 29 100.0 32 ............................. GTGCGCAGGATATTCTCGCGGACTGCGTAGCG 1238 29 100.0 32 ............................. CCTGTGACCTGTTCGATGAAGTTGTCGCGCAG 1299 29 100.0 32 ............................. CAGGCCGCGCAGTGGAAAATGAGCCCGTTTGC 1360 29 100.0 32 ............................. ATTGATCCAATTAACGTAGCTGCAATGTTTGT 1421 29 100.0 32 ............................. GCCGCGCATGACATCGAAAAAATGTGGGAAAA 1482 29 100.0 32 ............................. GCGTCCGTGTGATCACCGGGTGGGTGATGAAC 1543 29 100.0 32 ............................. TTCAGCGAGCCATAAAACCGCAGTTTGTTTGC 1604 29 100.0 32 ............................. TCACTTCAATAAGTCCTGGCGGTAGCTCGGGG 1665 29 100.0 32 ............................. CCCAGTCAGGGGCGCGATATTGCCGCCGTGTT 1726 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 1788 29 100.0 32 ............................. ATTCTGGCTGTTATCGGCGGCACTCCTGATCA 1849 29 100.0 32 ............................. TGAGCACTGTTATTCGTTATAGCGGGTTTCGG 1910 29 100.0 32 ............................. TTACTGAAACGGATAAAAAATAATCAGGGGGG 1971 29 100.0 32 ............................. GGTGAGCTGGCGTCATTGCCCGCCCCGGCGAT 2032 29 100.0 32 ............................. CGCAACTATCCATGCAAATATTTCCATTGCTA 2093 29 100.0 32 ............................. GCAGCACTGGCTGGAGTGGCTGGCGAAAAATC 2154 29 96.6 0 ............T................ | A [2181] ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //