Array 1 175679-175009 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNNX01000001.1 Nitrosomonas europaea strain Nm50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 175678 36 100.0 35 .................................... TCCGTTTGCCTGAACATTGCCGACATTAATATTCT 175607 36 100.0 35 .................................... CACTGCCCGAGCAGTATTCTCCGAATCTACGCCGA 175536 36 100.0 35 .................................... ATAGGTCTCGTTGGGAAAGATTTCGGCATGGAATC 175465 36 100.0 34 .................................... TTAGGATCACCATAACTGATCGCGTTAGCCAAGG 175395 36 100.0 35 .................................... GTAGTAATTTTTGTCTTCTTTCTTGATTCTGGTTT 175324 36 100.0 35 .................................... GTAGTAATTTTTGTCTTCTTTCTTGATTCTGGTTT 175253 36 100.0 34 .................................... AAATACTTTTCCTCATATGTCTCGAACCAGTAGA 175183 36 100.0 33 .................................... CATCTTTACTTCGAAACCATACGGCCAATAGAT 175114 36 100.0 34 .................................... AACGCCCACCTATCTTTTTCAACAGCAGGATACC 175044 35 75.0 0 ...........A......A...CGCC.....-..TG | A [175022] ========== ====== ====== ====== ==================================== =================================== ================== 10 36 97.5 35 GAAACACCGATGCCCTGATTTCAAAGGGATTGAGAC # Left flank : ACCGGATCACGATTCCGGAGATTGGGAATAAATATGAGAATAAGTGCACCACTACCCGGGTCCCATGCCAGCGGATCATTTTTTGAAAAGACAGGCAATGAGTGACTTTATCATCTGCTACGACATCACTGACCCACGCAGATTAGGACGCTTGTATCGTTATCTGATCAAACGGGCAGTACCATTGCAGTATTCGGTATTCCTGTTCAGGGGTGACGATCGTCAGCTTGAACGCTGTATACAGGATGCCATCGAGCTGATTGACGAAAAACAGGACGATTTGCGGGTTTATCCACTACCGGGCCGCGGCCTGAAAGCGCGTATCGGCCGCCCTACACTGCCGGAAGGCATACAATGGAGTGGCCTGCCGGCCAAATGGTAAAATATAATGTATCTGGAAGAAACAGTCGTTTAAAAAGAGGTAACTTGCAACATCCCATCAGTTTTCCTTATCGCCCTTTGCAATTTATTGATCTGGCGGAAGAAAAACACGGTGGTCA # Right flank : CGTAAATGCGTTTTGTCTGCTGTTTTCCCCGGCCATATATATCCAAGAATAATTCAACGTTGGCAACGTAAACCCGCAACAGCTCCAGATACACCCGCTTTACTTGTTATACTGCTCAGCCTGAAAATAACTGATCAAAATTACATTGATGGAGGAGAAATGGATATTTTGAGTTTGGTGGCAGGATTTCTGGCGGGTGCGCTTACGATTTATCTCGCCAGTTATTTCATGAAGCCGAGTGAAAACAAGACACAAAAAACGGTCGATGCAGGCACTATCAATTTGTTCGATCAGTTGTGGCAGACACATGAGCGCTTGCTCAACGAAATGAAGCAGGATGTAGAAAATCCCGATTTCAAATTTCACCGGGAATTTTATGTGCTGAAAAAAGGCTGGGGGTGGGAGCGCTGGGGATTTCATCGCAGAGGTCCCTGTATCGCCTATTTCCTGGAGGATCACAGTGATCTGCTGCCGTTGCTGGATTCGCTGACTTCTTACGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACACCGATGCCCTGATTTCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 35026-35639 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNNX01000004.1 Nitrosomonas europaea strain Nm50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 35026 37 100.0 35 ..................................... TGGCAATCCTTGATCCATAACGAGATGACTAGCTT 35098 37 100.0 35 ..................................... ATTGATGTTACAATCCGAGAAAACCGAGGCTCCTA 35170 37 100.0 36 ..................................... AGTGGCATCAGTAATAGATTTGTCAGGGTCACAGGC 35243 37 100.0 35 ..................................... TCTACCTCTCTTGATCTCCATCAGGAAATTGCCAG 35315 37 100.0 34 ..................................... TTTAAATCGCTAAGAATTACTGACCCTAATCTAA 35386 37 100.0 35 ..................................... ACATCGTAATAGGCTGCATTACTGGCCCGTGTCAA 35458 37 100.0 36 ..................................... ATGATGTATTCAGGTATCAGCGTCTGTGCCGGTAAT 35531 37 100.0 35 ..................................... CCGGTAGTCGACCTATTAAAGCCATCATTTAATTA 35603 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 9 37 100.0 35 GTAGCGCCCGGTCACCAGACCGGGCGAGGATTGAAAC # Left flank : GGTTATCTTCCTTTCTTGGTTAGATAATCATGCTGATCATTGTTACTTACGATGTTTCAACGGAAACCAGAGCAGGTCGCAAGCGATTGCGCCGTGTTGCAAAATTATGTGAAAGTATCGGGCAACGTGTGCAAAAATCTGTATTTGAATGTCGTATCAATTTAATGCAGTATGAGGAGCTGGAGCGTCGTTTACTGTCTGAAATAGACGAACAGGAAGATAATCTGCGGCTATATCGCCTGACCGAACCGGCGGAGCTCCATGTAAAAGAGTATGGCAATTTTAAGGCAATTGATTTTGAAGGACCTCTCACTATCTGATAAACGCGAACCTGTAGCACCGGCTCAATACCGGCCAGTTCGCGCTACATCTAACTGTATGGTAACAAACAGGAAAATAGCTTCCTTTTTCTACTGTTCGTTACCGGCAGCCGAGAAAATCTTTACGTTCGCGCAAATTGCCCGAATTTTAAAGATGTATCAAGCAGTTATAGTTGTACT # Right flank : CAGTTATTCTCTGAGCCACCTGCTGTTTGCACGTACTTGAGTGATTGGGTTCCTGTCCAGCGCAGTGCTATTCTTCAATATATGATTTCCATCGTAAACCAGTTTTGATTCACCACGATCCGGCTTGGAAAGCGTTTTTGTTTCTATGACATAGATACCGGATGAGTGGATGACGACATGGTCGAGATTAAATCCTTTTCCCGGTATATCGTGAAAAATATGACTTCCTTGGGCTCTTAATCGTTCAAGAAATTGCCCTACCGCAAGTTCTCCGGCCAAACCTAGCTTGATACGCTTGACTTCTTTGCGCCCTTTATAAATTTTCCATAGAAGTGTTGCGATACAAGGTATAGCCATCACTGTAAATAAAACCGGGTTTGGTGATGTTTGTGTATACCACCGTATCCATTCCCACGCGGCTATTAATACAAAACATAATGCTGCTATGAAATACGGAACGATACCATCCAGGAAAATATTCTGAAGACGGTGATTCAGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGCCCGGTCACCAGACCGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-17.60,-17.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : NA //