Array 1 6967-6579 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVY01000016.1 Pseudomonas cichorii strain MAFF 301764 sequence16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6966 28 100.0 32 ............................ CTGCCGCGTTGAACGCTGCCGCAATCTTTTCA 6906 28 100.0 32 ............................ TTTATGCACAATACCAGCAACAGCGTTTGAAG 6846 28 100.0 32 ............................ AGTGATCAGCGCTATTACTACGTGCCGTGCCC 6786 28 100.0 32 ............................ ACTGCCAGAACGACAAAAGGGCCGCAAAAGCG 6726 28 100.0 32 ............................ GTATCGAATTGCTGAAAGCCCCATGCGTCCAT 6666 28 96.4 32 .................T.......... AGGCACCGCGTACATCGAGGGCATTCGCCTGG 6606 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : GGTTTTTTAACACTTTGCCATTCGCAAACGATTGCAGGAACGAATTCATTCGCGAAGAGGCATATATGACGCTCTGAAAATACGCAGGAGCGCGCTTGCCCGCGACGGGGGCAATGAAAAAATCATGGTTCAAAACGCAGGCAGTGCGAATATCAGCAGCGGCGCATTTCTGAGCTGCCTATGCCGCAGTGAAGAGTGTGCCCCGTCGCGGGCAAGCCCCCTCCCACTGGGACCGGATCTACCCGTGAGATGCATCGCGGGCAATGAATTTTCGTGGGAGGGGCCTTGGCCGCGACATATCAACAGGTACGGCTATGTCGCATAGTGTTTGAACGTCTGTCTACAGCGGCCAGGAATGAATCCTTTCTTGACCCTCTTTTTTCGTCTCAGGTTCGTCCTTTAAAAATCAATGACTTACAAAAGCTGATGAGAAAAGGGGTAAAACGGCTTCAGGCGCATATTTTTCTTTGAAAACGGAGGGTTATCGAGCAAAGTGTCTA # Right flank : ATCACCGGATGAATGTCGCCGTCCGGCAATCGACTTCACTGCCTATAAGGCAGTGAAGGCAAAAGCCGTTGATCGTGAAGGCCTGTATCACTTCAGCTACCAAACGCGCCCCAAACCTTGCGCCACATTCCTTGCCTGGGCTGCGGCGGGACCTCCATCACCACATGTGGCATATCCCGAAACCGAATCCATGATTCGTTACGCCATTGCAATACGCTCAGGGCATTGCCGAACCATTGCATCTGATTCAGGCACGGTTGATCGCCCGTGACCGCATGTTGCTGATGCAAAACCGGCAACACGTCATGAGTCAGCCAGTGACGCAAGGCGCGGTTTTCGGGGATGTAATGGTGAACCAGCATCGCAAACACGCCGGACTCACTGAGCAGCACGCACTTTTCCCAGCGGCCATGAGCTTGTAGCCAGGCGGTGCGACGTTGATCCGGGTCGAGCTTGAGCGTGGCGCGTTCGTCCAGCTTCTTGCCCATCAGGCGCGCAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 20459-19890 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVY01000016.1 Pseudomonas cichorii strain MAFF 301764 sequence16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 20458 28 100.0 32 ............................ TTAATCGATTGCGAGAATCATCCAATGTCAGA 20398 28 100.0 32 ............................ TGCTCCATTGCCTGACCTCGCTCAGTCTGTTT 20338 28 100.0 32 ............................ TGGGTGGGTTGCGCTGGCATCTGCAAACATGT 20278 28 100.0 32 ............................ AGACGGCGAGCTTCTTCACGCGATCAGTGACA 20218 28 100.0 32 ............................ CTGGGAGCAAGTTCGCTCTATGTGCTGGGGGT 20158 28 100.0 32 ............................ GGTGGGATTGCTTCATCACATGCTATCGCCTT 20098 28 100.0 32 ............................ AGCACGGCGCGCACCTGCGCGGCATCAGGCGC 20038 28 100.0 32 ............................ AGCCCGGTCAGTCCAGATGCATCTCGGGAAGC 19978 28 100.0 32 ............................ ATCATCGAAGTCCATGTTGAATGCGTTGTTGG 19918 28 92.9 0 ...........C.........C...... | C [19893] ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.3 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : TCTGCTCGATAACCTTCCGTTTTCAAAGAAAAATATGTGTCACTAACAGTTTTACCCCTTTTTCTCATGAGTTCTGTAAGTGGTTGATTTAAAAGGGCGCGTGTTGGGTGAAAAAAAGAGGGTCATGATCATCTTCAGTGTGCCTGTCGCGGGAAAGCCCCCTCCCACTGGGATCGGATCTACCCGTGAGACGGCATCGCGGGCAATGAAGTCTCGTGGGAGGGGCCTTGGCCGCGACAGGGTTCAGACAGAATCTCCGGTTTTTAGCGACTCGTTGTGGAGGCGTTGATGGTGACATATCAACAGGTATGGCTATGTCGCATAGCGTTTGAACACCTGTCTACAACGGCCAGGAATGAACCCTTTCTTGACCCTCTTTTTTTCGCCTCAGGTTCGTTCTTTAAAAATCAATGACTTACAAAAGCTGATGAAAAAGGGGTAAAACGGCTTCAGGTGCATATTTTTCTTTGAAAACGGAGGGTTATCGAGCAGAGTGTCTA # Right flank : CCGACTCAGGCACGCATCGCCAGTCGCCAGCAAGCTACCCCCTCATGGCCCTCTAACTGGCTTGCAACACAGAGCCAATTCATTCGCGAAAGGCGTTTCAATACGGCTTTCCCGGATGAATCCGGTCCTACAGGTTTTGAGGGCCGTGATCAGCCAACCCTGCACAAACCTTCTAGACTTCCCGCCTCCCATACGCGATAACACTCAACCCGACCCCAAACCCTGTAAGCCCACCATGACTCAGAGCAACTGGATCAATCTTGCTCAGGACCGCGACACCGGTATCGAGACGTTGCATGCCCATTTCCAGGGGAATGCTCATGTCTACGATCCGCATTGGCATGACAGTTATCTGGTGGGTGTCACGGAGCAGGGTGTGCAGCAGTTTCATTGTCGGCGGCAGCGTTATGCCTGTACGCCGGGGCAGGTGTTCATGCTGGAGCCGGGGGAGATTCATGATGGGGATGCGCCAAGTGCAGACGGTTTTACGTACCGGATGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 20966-21171 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVY01000016.1 Pseudomonas cichorii strain MAFF 301764 sequence16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 20966 28 100.0 31 ............................ ATGCCGTGGCCACCACTTCAAGCCTCACTGC 21025 28 100.0 32 ............................ CCTCGTCGACAAGCCAATGGCCCTGACTTCTA 21085 28 100.0 32 ............................ TACGACCCGGTCACTAACGGTCATCTGCTCTG 21145 27 78.6 0 A..A.......A.C..........-.C. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 94.7 32 CTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : TCTGCTCGATAACCCTCCGTTTTCAAAGAAAAATATGCACCTGAAGCCGTTTTACCCCTTTTTCATCAGCTTTTGTAAGTCATTGATTTTTAAAGAACGAACCTGAGGCGAAAAAAAGAGGGTCAAGAAAGGGTTCATTCCTGGCCGTTGTAGACAGGTGTTCAAACGCTATGCGACATAGCCATACCTGTTGATATGTCACCATCAACGCCTCCACAACGAGTCGCTAAAAACCGGAGATTCTGTCTGAACCCTGTCGCGGCCAAGGCCCCTCCCACGAGACTTCATTGCCCGCGATGCCGTCTCACGGGTAGATCCGATCCCAGTGGGAGGGGGCTTTCCCGCGACAGGCACACTGAAGATGATCATGACCCTCTTTTTTTCACCCAACACGCGCCCTTTTAAATCAACCACTTACAGAACTCATGAGAAAAAGGGGTAAAACTGTTAGTGACACATATTTTTCTTTGAAAACGGAAGGTTATCGAGCAGAGTGTCTA # Right flank : ACCAATCAAATCGCACGGCTACTCAATCCATAACCAACTGATTTATATAAATTTAAAGCACTCACTGTAGGAGCGCGCTTGCCCGCGACGGCGATATTCCTGACGACAGATGTGTATCGACTCTGCCTATGCCGTCGCGGGCAAGCGCGCTCCTACGATCCCTTCCGTAACTCCCTTCGTACACAAATCGCGGACTGGTCTTTCTGACACTCTGCCGCTCCCCGGCTCAAAAAACATAAAGCGCCGCCCTACGCTATCGGCTATATATGTTTCCTCTCACCGGCCTAGTGCCATTAGTGGTAGTGCTTCTTTCATGGATGACATCAGCTCTTCGGATCTCAAGACGATCCTGCATTCCAAACGCGCGAATATTTATTACTTGCAGCATTGCCGGGTATTGGTAAATGGCGGTCGGGTCGAGTATGTGACCGATGCGGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAATACCACGACCGTGCTGCTGGGCACCG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //