Array 1 8182-7363 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRST01000001.1 Megamonas rupellensis strain AF29-2 AF29-2.Scaf1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 8181 30 100.0 35 .............................. TGACGAGCCACACCGCAAGAAAGGCGAAGCGTTAC 8116 30 100.0 37 .............................. GAATTAGACTCCGAAGATAGAAAGAAATTTGTATCTT 8049 30 100.0 35 .............................. AGATAAGTAACATATCCACAAGAGCTTTTAACGAT 7984 30 100.0 35 .............................. ACAAAATAGAAGATACCATTAATCAAGTTAGAGTT 7919 30 100.0 36 .............................. AAAAATAAACAATATATTTAAAGAATTTCAAAGAAA 7853 30 100.0 37 .............................. GTTGCTAAAAAATTAGAAGCAAACATAACATTACCTA 7786 30 100.0 37 .............................. ATGATTACAAAGTAGTTTGGGTTAAATTGTTTACCCA 7719 30 96.7 35 ....................A......... GTTGTAGGATTTTCGCTTTCTAGAAACTCTACCCT 7654 30 100.0 35 .............................. GGAAAGTTCAGGTAAATTAACTATTAAATATATGA 7589 30 100.0 36 .............................. TTGAACGATATTGCAAACATTCTAAAGGTAAGTGGG 7523 30 100.0 37 .............................. CAATTTTTTACTGTGAACGTGCCAAAGATAAATCTAG 7456 30 100.0 35 .............................. GCGATTACTGATGAAAAGATATATACTTCTGTATT 7391 29 76.7 0 ...............TT..A-.....CT.A | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 98.0 36 ATTTAACTTTAACAAGAGTTGTATTTGAAT # Left flank : AAATACTCATCATAATTCTTTAGATTTATTCTTCATATCACCAAAATATCATGGAGACGGCTTGGGTCTTGCAACATGGAAAACCATTGAGAAAAAATATCCCGATACAATCACATGGAGAACAATTACGCCATATTTTGAACAAAGAAATATACATTTTTATATAAATAAATGCGGATTTCATATAATAGAATTTTTCAATAAATATCACAAAGAAAAAAATATGCCCAATCATATAAATGATAAACCCAATCCATGTATAGATAATTATTTTCTCTTTGAAAAAAAGATGAAATAATCCAAAGAAATGCTACTTGCCAAAGATATTTTATCTCTAATTTTACCAGTTAAATTCTTAAAAAAGCTTTTCATTACCTGAAAAATAAGGCTTTTTATAAAATCTTTAAAATTACCATTATCGCTGGTAAAAAATATCAATATCCTTGTATATCAATACTTTTAATAGTATAATGAAAATCACAAATACTGATTTTTCTAGC # Right flank : AATAACTTTTCCACTATTTGATAAATATGTAGATAATTATAAAAATAAAAACTCATGGATTAAAATACCCATGAGTTTTTATTTTGCTTTATTCTTTATTAGCTATACCTAATTTACCAAAAACATAAAACGATAAGCTAAGAATCATGCCACAGACAACAGCAAGGCCCATACCTTTTAATTGTACAGGACCAATATTTACAGCAGCTCCACTAAGACCACTTATCATAGTTACGGCAGTAAGTATCATATTTTTCGTACTAGTATAATCAACTTTTTTCTCTATAATCATACGTATACCAGAACAAGCGATAACACCAAATAACAATACAGAAATACCGCCCATTACTGGTACTGGAATAGCATGAATAATCGCAGCAATTTTACCAATAAAAGAGAAAAGAATAGCAAAAACAGCAGCTCCACCGATTACCCACACACTATAAACACGAGTAATAGCCATAACGCCCATATTTTCGCCATAAGTAGTATTAGGAGTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 198831-197355 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRST01000002.1 Megamonas rupellensis strain AF29-2 AF29-2.Scaf2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 198830 30 100.0 36 .............................. TAGAAGGAGCTATTTTTATATCATTCTTGACTTATT 198764 30 100.0 36 .............................. TGTTCTACTTGATTTGTTTTCTGAAGCCAAAGAGCA 198698 30 100.0 36 .............................. AGGTATGATTTTATTTTTGTTTAGCAGTTTGAGTAT 198632 30 100.0 36 .............................. TGTGTTTAAAGGAATATGTTTGGATGCCTTAGAATT 198566 30 100.0 36 .............................. GCAATTTGATTAATAACACCTGTAATACTATTTATA 198500 30 100.0 35 .............................. AACGAATGGTATTCCTAAGCCAGACAATAAGCTTA 198435 30 100.0 36 .............................. TCATACGCCATCACCTCACCACCTAAAAAATTGCAA 198369 30 100.0 36 .............................. TGGTACATCTTGCCGTTATCGAACTGTATGTCATAA 198303 30 100.0 39 .............................. TTGCTATCTTCTTCGAGTTGCAATTTTCTTGGTGCACCT 198234 30 100.0 36 .............................. ATGTATTTATACCTACAAAGATTTTAAACAGCTTAT 198168 30 100.0 37 .............................. CTGCTACTAAATCTACGCTGTTTACTGTAACACCTGT 198101 30 100.0 38 .............................. AGGTATCAGCGGCCTAAATGCTGCACGTGTTGGCGCTT 198033 30 100.0 34 .............................. TCTTTATTAAGGATAGGTTGTCTATCTGTTCCAG 197969 30 100.0 36 .............................. TTGTTTTTAATTGCGTCCATGTAAAAAGCAGGCAAG 197903 30 100.0 34 .............................. TCGGTAAGAAATATAACCATCTAACAATATTAGA 197839 30 100.0 36 .............................. AACAATGGCGAGATAGTCTGCATGTTATTAAGCCGT 197773 30 100.0 33 .............................. AGACCAGATTAACGACGTATTATATGACCATAA 197710 30 96.7 35 .............................T TGTTTTATCTTTGTTAGTGTAAAAATATCGTCCGG 197645 30 96.7 34 .............................T TAGATTTGTTGAGTAGTTTTTTGTGCCCATTTAG 197581 30 96.7 35 .............................T TTTTGCTTTTGGCGAACATATTTATAAAATAAATC 197516 30 96.7 36 .............................T ACAGTTATTCTTTTTCCAAAGGTAATATCTCCATTA 197450 30 96.7 36 .............................T AAATGTAACAGCAAAACAAGAAGTAAAATCCTCTAG 197384 30 83.3 0 .......................CAAA..A | ========== ====== ====== ====== ============================== ======================================= ================== 23 30 98.6 36 ATTTAACTTTAACAAGTGTTGTATTTGAAC # Left flank : TTATCCTCTTGCTAAAAAATATTTAAAAGGTTGCAGTGGTGTTATCACTTTTGTAATCAAAGGTGGCAAAGAAAACGCTGTTAAATTCATGGACTCCTTAAAATTAGCTTCTAATGAAGTTCATGTTGCTGATATTCGTACTTGTGTTCTTCACCCAGCAAGTGAAACACATCGTCAATTGACAGATGAACAACTCGAAGCTGCTGGTATCAATAGCGGTATGGTTCGTTTCTCTGTAGGTCTTGAAGATATCAATGATATTTTAGATGACTTAAAACAAGCTTTTGCTAATGTAAAATAATTATTTAAAGGCATTTGTGTAAACAAGTGCCTTTTTTATTTTCCCAGCCATTTTTTAGTTTAAAACCTAAAAGCCTTATAAATAAAGGATTTATTAAAAATCATCCAAAATCCTAAATCGCTGGTAAAAACTCATATAAATATTGATATTTCAACCTTTATAAACTATAATTATTTATAAAAGTGTTAATTTTACTGGC # Right flank : AGCTGTAACAAAGAGAATTTCTCAATGTTACAGCTTTTTTTATTAATTTTATAATGTGGAAAAGAAAAAGTTTATTAAAATTGGTACGGCTACTGAACATAATACACCATTAATTACAGATATAATAATAAATTCTTCACTACTGTATTTTATAAGCATAGGCAAAGTGGAGTCTTCGCTTGTTGCACCTGCTGCTCCTATAGCTGCAAATGTATTTAAATATTTTACTAAAACTGGAATCATCATAAAAGCGATAAATTCTCTCATCAAGCTACTCAAAAAGGCTATTGTGCCTATCTGTGCATTTGCTAGTGATTCAAGCATTACCCCTGATAAACTATACCAACCCATAGATGCACCGATAGATAAACTATATACCAAATTCATATCAAAAATATAACTGCAAATAAATCCGCCAAAAACAGACCCAATAATTACACCTATAGGAATCAATAATATTGTCAAATTATAATTTTTTATCTTCTCAATTATTGATTCAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGTGTTGTATTTGAAC # Alternate repeat : ATTTAACTTTAACAAGTGTTGTATTTGAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 3813-4491 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRST01000028.1 Megamonas rupellensis strain AF29-2 AF29-2.Scaf28, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 3813 29 100.0 34 ............................. TGTCAGCACCATCGAAGGCATTGCGGTCTATTAC 3876 29 100.0 37 ............................. GAAATTTTATACAAGGGGTAGTCAAAAATTTTGACGA 3942 29 100.0 35 ............................. GCAACAATGCAGTCATTATATTCACCAATGCCTCT 4006 29 100.0 37 ............................. TATTTCTTAAAAAGTGCAAAACCACGAATTTAACTTT 4072 29 100.0 37 ............................. CACACGTTGACTATAAAAAAATGATTTTGGGTAGATT 4138 29 100.0 37 ............................. CTGCAAGAGTTGTTACGACAAATAAAAGATAATAATC 4204 29 100.0 37 ............................. CTACTTCTATAGCCTGTTATAGGGTGGTAACAGGTCA 4270 29 100.0 37 ............................. CTATAATATATTGCACTCCTAACGCATATTCTCCTAA 4336 29 100.0 34 ............................. CTGTTAGAGTTTACAGTTACAGTACAACCACCTG 4399 29 100.0 35 ............................. TTTCCAATAAAAAAGAACAGAACAACGTTTCTTGT 4463 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 100.0 36 GTTAAGCATTAACATTGTACGGTCTCTCT # Left flank : TTAAATAAAAAAATTAATATGACAGATGCTCCTAGAGATTTACGATGCTTTGTGGATTTTAAAATCTTATTAGAACGATATTTCTTTTGTGGTCATAAATGGGCAAAACCTAAAATAATTGTTTTTAAAGAGCCTGAAAATTATTTAAATAATACTTGGCAGGATTTATATGCTGAATTTGTTGTTTTATTGCAAAAATATATAATTCCGAATTTGATTATAAGAACAGAAAATAAAGATTTAATAGCTAAAATAAAACATTACATCAAAATTCATGATAGTATAGCAAAGGTTAATGTATATGAAGCTGTGGAAAATAATGATGGCTTTAATCTAAATAAGTTAATTGGTTAATAAATAAAAATTACCAGCTAAGATGGATAAAAGCTTATAGATAAAGAACTTTTAAAAATTAATATTAGCTGGTAATTTTTTTATAAACCTTGAAAAATAAGGCTTGATAAGCTATAATGAAGAAAAAGAATATTGATTTTACTGCG # Right flank : TTGAGTCCATCTATTGATATGATGTAATAGGCTGGATATGTTGTTTGCTTTTTAGTGATGTTATTTTATTGATTAATATTAACAAGTGATGCTTAATTGCAAAGTGAATAAGAAAAGACATAACTTTGATATATTTTAAAGTTATGTCTTTTTTTTATAAAAATTTTTCTTTTTTATGCCGGATTTTGTTTTTAGTGGTGGATATTATATATATAAAGAAAAATGAGGTGAGAATCATGAAAACATTATTTGGACTAGTATGGTTTCTTGTACAAGTTTCGCTAATGATATTAGCTGGTATTCTTTTTGGTGGCATAGCTCATTTTCTGATTGAAAGTAGATGGATTATTCTTATTCCTGGTTTGATATTGATTTATTTCCTTGGACCATATATTTTGGAGCTCATAATAAAATATAATCTTATCAAAGAAATAAAAAAAGAGTTCGATAAGTAAAGTTGTAAAGAGTAAGAAAGGAGGTGGTTTTATGTAAATTTTTAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCATTAACATTGTACGGTCTCTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 32760-32918 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRST01000012.1 Megamonas rupellensis strain AF29-2 AF29-2.Scaf12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 32760 30 100.0 35 .............................. AACATTAATTTTAGTTATCGGTGGCGTCAATTTAA 32825 30 96.7 34 ..........................A... TTATATAAAATTTCTTTTTCGGTTTTTAAATTAT 32889 30 96.7 0 ................T............. | ========== ====== ====== ====== ============================== =================================== ================== 3 30 97.8 35 ATTTAACTTTAACAAGAGTTGTATTTGAAT # Left flank : CAAGGTTCAGGTTGTGCTATTTCCCAAGCTTCCACAGATATCATGATTGATTTAATGCTCGATCAACCAATCGACAAAGCCAAAGAATTATGTCGTTTATTCATTGGCATGGTTCAAGGCACAATCACTGACGAAAAAGAGCTTGCCCCTTTAGATGAAGCTCTTACCTTTAAAAATATATCCAAAATGCCAGCTCGTGTAAAATGTGCCGTACTCAGCTGGCATACTATGGAAACAATCCTAGACAAAGCCCTCCAAAACTCTCAATAAATAAAAAGTATCATCTTGATTTAAATAGTTCAAAACTAAAATTAAGATGATACTTTTTTTATCTAAAATTTACTAAACAAAATCAAAAAAAATCTCGCTAATCCTTGATAAATAAACTTTTTTACTAAATCCCTTCAAATCTCATTATCGCTGGTGAAAAATAACTAAAATCCTTGTTTATCAATACTTTTAATAGTATAATAAAAACCATAAGGATTAATTTTTCTAGC # Right flank : TGTTGTAAGATTTTCTCTTTCTAAAAATTCTACCCTAATTTAACTTTAACAAGTAACGATGAAAAAGCCTTAGGAACTGACCATTCCTAAGGCTTTTGTGCGTCATCATGAGTTTGATTTCGTCTATACTTAGTATAATATATTACATAGATTTTGCAATACAAAGCTTGTTATTGTGCAAATAAATATTTATGATAAACTACATCCTAAAAATCAAATAAAAACGGCAACAAAATGGCAACAATAAAAAAGTACCTGCATAAAACAGGCACTTTTATAAATAAATATACGAATATTATTTTCTCACAAAAGTCATAATTATAGTATCCTCACCATAATTATGTTTCATTTTCTCATAGTCTTTAGCCTCAATAGGTGTTATAACTACAGTCTTTAAGCTAGGATTTAATTTATTTACTTTTTCTACCACGCCTAAATGTTCATCACCATGAAAACTTCCTTGTATATGGAGAACTTTTGTATCTTTATGTTCTTTTAAA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 43428-43067 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRST01000007.1 Megamonas rupellensis strain AF29-2 AF29-2.Scaf7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 43427 30 100.0 36 .............................. TATAATTATCAAGTTCAAATAAACTCAATTCTTTAT 43361 30 100.0 37 .............................. AACTTTGATATACTATTTGTAGAAATAAAATCAAGGC 43294 30 100.0 36 .............................. TACACTTTTACTAGCCAGAAATCATCTAATATAACA 43228 30 100.0 36 .............................. TTTATAATCGGAAATTATTCCACAAGCTAACTTGCG 43162 30 100.0 36 .............................. CCGTTTTCTCTGGTGAATGCTTCCTGAAGTGTGAAG 43096 30 90.0 0 .......................TA....A | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 98.3 36 GATAAATATCAACAGATACTGTACGAAAAC # Left flank : TGCTGTCAGCCCTTTAAATTCTCTAGTATTTATATTTGGACAAACTTCATAGAAAAATTCTGCCATATCCTCATCAATAGTTCTGATGGTCAAAGTATATATCTTGCCTTTTTTATAGATTTTATCTTTTTCCAATGGCGATAATAAATCATAGCAATAATTTTTATATGTATTTGTATTATGTAATTTTCCTAGATTTTCTTTTGCAAATAAGCTTTTATCAATAAATCTAGTCAACATGATTTGCACATCTTGTGCCATGATATCCTTTAATAAATATAATTTTATGCGTATTTGATAAACTTTCATCAAAATGCCCCTTTCTTTGAATTTACCAAGTGATATATTCATCTTTATGCAAAAATGCTGATATATCAATAATTATAACAAAAATTCGTCATTAAATTCTCAAAATCCTTTTCGCTGGTAAAAAATCCCTAAACCTTGATAAAATCACTATTTTCATATATAATATATTTCATAAACCTTAATCTTTAAGG # Right flank : AGGCTTGTTATAGTTATTTTTCTATAACAAGCCTTTTTATTTTGCTTTAATTTAATTTTATCTGTATTGCTCCCATGCCTAGATGCGTATTTGCTCCTATTGATGTATACTGGGAAAATTCTGCCAGCATTAAGATTATTTTATTTGCCATTATATTATTTTTTAAACTAAACCTACATTTTCCTTGAAATGTAGGTCTTTTTTTGCCATTTATCAGCTGTGGTCTTAAAACGACTTCATAATCATCTAGTTGTATTTCTTGTGCTAAATTTTCAATTAAATCTTGTTCATACAATTTTTCATCAATGGCAAATAAATTCCAGATAGAAACTAAATTCATTATTATATCATGCGGTTGACAAATCATTTTGTCTTCTTCGCCAAACAATAAAGTCGGTGTCAAAAAGTTAAATTCAATATAGCTACTTTTCAATCTACGTGTAAAATATTTCGTTACTAATTGCTTATATGTAGCACTATGAATATAACTTTTCTTCTCT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATATCAACAGATACTGTACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 14763-14474 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRST01000006.1 Megamonas rupellensis strain AF29-2 AF29-2.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 14762 30 100.0 35 .............................. TTATTTCTTTGATTTGTTTCTTGGTTCTTCGCAAA 14697 30 100.0 35 .............................. GAATAATACCGCTTTCATGGCTTCATTGTGTTTAG 14632 30 100.0 34 .............................. TCATTATAAGATGTCCCCTTTATCTAAATTGTGT 14568 30 96.7 35 ...............A.............. TTCTGTTTTCTTATTGCTAAATAAGTTTCCGTATC 14503 30 83.3 0 ...............A.......TT..A.A | ========== ====== ====== ====== ============================== =================================== ================== 5 30 96.0 35 GATAAATATCAACAGGTGCTGTACGAATAC # Left flank : CTTAAATTTTTGCCTGCTTTTACTTCATCAAGAACTTGCTTTGTTTCATTATTAGGATTTAATGTTAAAGCAAAAGGAATGCCATTATTTCTAACAACAGCATTTAAAAACATATTTACAGCTGTAGAAGTATTTAATCCCAATAAAGATAAAATTGCTTCAGATTGTTTTTTCAAATCTTTATTAACTCTTATATTTAACGTTGTAGTTTCAGACATATATATCACACCTCTCAATATTATTATATATAAATTTGACAAAAAAATATATAATAAAGACAAAAATTGACAAAATTCATAGATTTTTAATCATATATTTATAAATATTCTTTAAAATAAAATTTACCAACCTAAAATTTATAAAATCCTCATAAAGCTTGATTTTATTGACCTACTCAAATCTAATATATTATCTATCATTTACTGGTAAAAATTATAAAAGTCTTGCAATATCAATAGTTTATAACTATAATGTAATTAATAAATCCTAATAACATTAGG # Right flank : AAGTCCTCTTTTCTAATAAAGAGGACTTTTATTTATTCCAAATTAATTAATTTTTCTTTTCAATACTCACCTTTATAGGTTATAATTATATACATTATGCTTAGAAAGGTTTTTATCATTATGAAAAATTTCTTTATTGAGTTTAAAAAATTTGCTTTTAAAGGTAATATGCTTGATTTAGCAGTTGGTATGATTATTGGTACTGCTTTTACAGGGCTTGTAAATTCCATTGTAAAAAATTTAATCATGCCTATAATCAGTATTTTTACTGGCGGTATTGATTTTAATAATATGTATCTGCCACTTAGTAAGGCGACTTTTATACTCGCTGAAAAAGGTGCTGACCTTGAAACAGCAAAAAAAGCTGGTGCAGTTTTTGCTTATGGTGCCTTTTTAACAGATTTTCTCCAATTTTTAATTTTGGCTTTCGTAGTCTTTTGTTTAATTAGACAGCTAAACAAATTAATTCCTATTCCTAAAGAACCGCCAAAAACAAAAAT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATATCAACAGGTGCTGTACGAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 59707-60782 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRST01000006.1 Megamonas rupellensis strain AF29-2 AF29-2.Scaf6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 59707 30 100.0 35 .............................. CCTGGTTTGACTAAAAATGTAAAAAAGGTAAAGAG 59772 30 100.0 36 .............................. TGATAAATTCGCGATATTAAAATACAATAGCCGCAA 59838 30 100.0 35 .............................. AAGTTGGCTAGGCGAGAATTATTCTGAACGTATAT 59903 30 100.0 35 .............................. CACTTTAACTGGTATTAATTTAGCTAGTGTTATCG 59968 30 100.0 34 .............................. ACCATACAAAGATTTAAGTCGTACGCAGTTTATA 60032 30 96.7 37 A............................. ATGGCAACAGTGCTACAGGCAGAGATATATTCAAAGG 60099 30 100.0 32 .............................. TTATTCATTTATGCAAGGACATCAATTATTTT 60161 30 100.0 34 .............................. GTGTGTATAGAAGACATAATTAGGCATTGTTACA 60225 30 100.0 36 .............................. TGCAATTATACATTTTTAGATTGTATAGAAAAAGCA 60291 30 100.0 37 .............................. TGAAAATAAATTGTGAGAAAATCTATGAAGAACTTTT 60358 30 100.0 37 .............................. TTACAGCCACTGGTAATAAACGACCGTGTACTATACG 60425 30 100.0 36 .............................. CAATAAATAGGTGTGTAAAAATAAAAAGTATCATCA 60491 30 100.0 37 .............................. ATTACCAGTGATTACATTAGAAGTATTTTGATTTTGT 60558 30 100.0 36 .............................. ACTAAAGCTCCTATAATAATCGCTGGATTATCTATA 60624 30 100.0 34 .............................. CTATTAACCAGCTCAGAAATGCTGTACGCCTAAA 60688 30 100.0 35 .............................. AAGGTATATCTTAGATTGGCGGATATTAGGATATA 60753 30 93.3 0 ........C........A............ | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 99.4 35 GATTAACAGTAACAAAAGTTGTTTTTGAAT # Left flank : CATATTCATTGAAAGCAGGGTATTGATGAATGAGTAAAAAAATAAATTATAATTATGCTTTTTTATTTTACGATGTAAATGAAAAGAGAGTACAGAAAGTATTTAAGATATGTAAAAAATATTTATCACATTTTCAAAACTCGGTATTTAGAGGAGAGATAACACCATCCAAATTAATGAAATTAAAATTGGAACTACAAAAAGTTATAGTAGATGAAGAAGATTTTGTTTGTATAATAAAGTTAATGAATGATGATGTATTTGGTGAAGAATTTATAGGTAAAAAAGATGTAGAAACTGGAGAAAGTTTGTTTTTATAGACTAAATTTTACCAGGCATAAAAATAAACATATGCTGATAAACCCTTATAAATAAAAGCGTTATGGCACATTTCTTTCACTAGAAGGATAAATGCATTATGCCTGGTAAAATTTACTTAGAATGTTGAATTATCAAGGTTTTTGAGTTATATTATAAAATATAAAGCCTTTAAAAACGAG # Right flank : TTCTCCCCTGACGCTAGATTACAAGAAACTTTCAATATATTGGATAATATATATAATATAAATGATATGGAAAATGGAATTTTAACAAAACTTTTTAAATAAAAAATGCATTAGAATTTTTTCTAGTGCATTTTTTTATATAATTATATTGTGAGGTGAATTTTATGGAATTTAGAGTATTAAAATATTTTTTAACTGTTGTAAGGGAAGAAAATATAACAAAAGCAGCGAATGTATTACATATTACTCAGCCAACATTGAGTCGACAATTAGCTCAATTAGAAGAAGATATTGGAGTAAAATTATTTAATCGTGGAACTAGAAAGATAAGTTTAACAAATGAAGGAATGTTATTAAGACGTAGGGCAGAAGAAATAATTTCTTTAGTGGACAAAACAGAACAAGAATTAAATGAACAAGATGAAATGTTAGATGGTGTGATTTCTTTGGGATGTGGAGAATTAAGTTCTGTATCAACACTAGCAGATATATTAGCTGGT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACAGTAACAAAAGTTGTTTTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 99393-102706 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRST01000006.1 Megamonas rupellensis strain AF29-2 AF29-2.Scaf6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 99393 30 100.0 36 .............................. CAGTAATTTAAATAGAAGGATAGATAAATTATATGT 99459 30 100.0 35 .............................. ACTGCTACTAAATCATCTTTTTCTAATAACTGTAA 99524 30 100.0 36 .............................. TTGTTTGGCATGTTATAAACAGGAAGTACGCCAACG 99590 30 100.0 34 .............................. CTACTAAAAGAAGGATATCCCATCATTCCTGTGT 99654 30 100.0 36 .............................. CTGCAAGGATTGGAAATTTCAATCTTATAATCATCA 99720 30 100.0 36 .............................. GTTAATAAAAGAGTTAGCTAAGGCTCCAACTCGCGA 99786 30 100.0 36 .............................. TTGATGTTCGCTGCATTTGCTGTCGCATTTGTGGGT 99852 30 100.0 37 .............................. ACGTTATAAGTACCATCTGAACCGCCTTCCAGTGGCA 99919 30 100.0 36 .............................. TGGATTGTAAACTTATCATTTTATCACCCTAATGTT 99985 30 100.0 35 .............................. TGGCAAATGGGTACGTGCAGAAGGTTTGGTTTATC 100050 30 100.0 36 .............................. TCTGTTAGAGTCTTGCGAGCTTCTTTACTTCTTATG 100116 30 100.0 35 .............................. GAATTAAAAGGAGAAGAAGTTTCGCTTTTATGTAT 100181 30 100.0 36 .............................. TAGTTTTCCTCACTTAAATCTTCTACATTATCCCAA 100247 30 100.0 35 .............................. TATTCATTACACCAAACTTTGTATTGATACACATT 100312 30 100.0 35 .............................. GTGCATTTATATTGTTGTTGTGATTTTCTATATCA 100377 30 100.0 36 .............................. GATGTAGTATAAAGCTTTTTAGAGTGAGATAACAAG 100443 30 100.0 35 .............................. TACTATAAAGATACAGATATAAAGGCTGTTATGAT 100508 30 100.0 36 .............................. AATTAAAAAATATTTTCCTACTATTTACCAAGACAT 100574 30 100.0 34 .............................. TTTATTTAGGTCTTTATATCCTGTATCTATACCA 100638 30 100.0 34 .............................. GGCAATGGCTTTACTATTTAGACTTATTGAAAAG 100702 30 100.0 37 .............................. AAGTTCAGAAAACCGAACCCGAAGATAAAAAATTTAA 100769 30 100.0 36 .............................. ACAAGTTTTGGGAAGCTTATCCAAAAAAGAGAGATA 100835 30 100.0 34 .............................. AACGGAGGTCTAATTAATGGCAAGTGCAGGCGGA 100899 30 100.0 35 .............................. TCGTTTTGTGCAGTGCCAAATGAATTAAATTTAGG 100964 30 100.0 36 .............................. TGCCGGATAATTACAGTATTTATACAAAAGGCGTAG 101030 30 100.0 37 .............................. ACAGAATGGACAAAGAAAACACCGCAGGAAATTCTAA 101097 30 100.0 35 .............................. AAATATGATCTCTACTACCTTCTGTTCTATATTCT 101162 30 100.0 36 .............................. AGCTTCTTTTAAGAAGTAGTTAACGAAGTTTGTATC 101228 30 100.0 36 .............................. ATAGTTGAAAAATCAAATATAAGTATCAAATAATAT 101294 30 100.0 36 .............................. AAATTTATACATTCAAAATATTGTAGTAGTTGTAAT 101360 30 100.0 34 .............................. ATTTTTGTTAATATCCAATTTTCCCATGTTGTAG 101424 30 100.0 35 .............................. TGCAAATGACACAAGGGAAAAGCCCTGAACAGTTA 101489 30 100.0 35 .............................. GTAAATCAGATATTGGTGCTACAGTTTTGGGCGGA 101554 30 100.0 37 .............................. TATTCATTATTGTAGTCTAATGCATAATCAGCACTAG 101621 30 100.0 36 .............................. GATATAAAGTACAATTTGTCAAAGTTTGGTAATCTG 101687 30 100.0 36 .............................. TTATATTGGATTTATTGTTTTATTTATTAGTTTTGG 101753 30 100.0 38 .............................. TTAATTGGATGGTAATTGGAAGGTTTTAAAAAGGAGTA 101821 30 93.3 36 ...............T.............C GTAATTTTTCAATATCCATTATTCAACCTCCATTAT 101887 30 93.3 36 ...............T.............C ATTACTGTTGTAATACTTGCTGTATATTCTGTTGCG 101953 30 93.3 36 ...............T.............C AAGTGATGACACTATTTCTGAAACTAGAATGGGTGT 102019 30 93.3 37 ...............T.............C AGCATGATAGAGTAGATTTAACGGTAGACTTACTTAA 102086 30 93.3 36 ...............T.............C TGCTCTAAAACTACAATAGGAATTTTATCCGCCTTT 102152 30 93.3 36 ...............T.............C TCTATGATTAGAATATCGCCACCCATACCAGTGATA 102218 30 93.3 36 ...............T.............C ACCATTTACGGTATCGCCAGCCAATAAATAACTCAT 102284 30 93.3 36 ...............T.............C TTATTGAATTGTATTAAATAATCTTTATCCATAATT 102350 30 93.3 35 ...............T.............C ATCGACACAGCTACAGGAGCAAGTAGTAAATTTGA 102415 30 90.0 36 A..............T.............C TATTTTTCACCTCACCATTTTCTTTTATTAGCATTG 102481 30 96.7 34 ...............T.............. TAATTTCTTTTATAATCAGAAATTATTCCACAAG 102545 30 100.0 36 .............................. AGTTGATGAAAGAACAGCAAAAACGAATAGAAGAAC 102611 30 96.7 36 ...............T.............. CCTTAATTGTCATTTAGCATATAAAAATTTTAAAGT 102677 30 86.7 0 A.......T........A........T... | ========== ====== ====== ====== ============================== ====================================== ================== 51 30 98.2 36 GATTAATAGAAACAAGAGTTGTATTTGAAT # Left flank : GCAATAGATATCAATACAAGAAAACCATTACTTGGCAATATCACAGGTGGTCTTTCTGGCCCTGCTGTAAAACCTGTAGCACTTCGTATGGTATGGCAAGTAGCAAAAGCTGTAAACATTCCAATCATTGGTATGGGCGGTATTGCAAGTGCAGAAGATGCTATTGAATTCTTGCTTGCAGGTGCAACAGCAGTCGCAGTGGGAGCACATAATTTCATTGATCCATCAGCATTAAAAGTAATTGCAGATGGTATTGCTGAATATATGCAAAAACATAATATTGAAGATGTAAATGAACTTGTAGGAGCATTACAAGCTTAAATAAAAAATTACCAAGTGAATTTTTAATAAATAGTCTATAAAGCTAAGCAATATAAGCTTTATAGGCTATTTTTTATATAACTAATAAAAATCAAAATCGCCTGGTAAAATTTTTTTATATCCTTGAATAACAAGATTTTAGAAGCTATAATAAAAAAAGAAATGCTAATAAATATAGG # Right flank : TGAATTAGGAGAGATAAATAGTTGTGGAAAGTGTAAAAGATATAAAGAAAGTTATTATTGATATATGTTATCAGGAGGGAATTACAAGAAGGGATTTAATAGCGGTATACAATAAAAAATATAATAAAAATTTATTGGAACAAACTTTTACAAAAACATTATCAAATAATAATATAAAATTTAACATGTTGGTAGACTTGTTAGATTCTATAGGTTATACAATAGATATTAGAAAAAAATTATAAAGAGATTTGTATTTATAAAAAAACTTATTGACAGTATATAAAGTTTGTGATATATTGATATATGTTGTATCTGAGATGCAACGTATTGCACAAGAAGAAGTCACCACTTCTCACCTTATGGCGTGCTAGTCACTAGGGTTACTAATTAAAACAAAAACGTTTAACGTATATTTTAATTTGTAATATCAGAGGGTGACGTGCGTCATCCTCTTTTTTGTGTATATAATAAAAATAATATATAAATAATGAGGTGTT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATAGAAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 40014-37091 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRST01000017.1 Megamonas rupellensis strain AF29-2 AF29-2.Scaf17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 40013 30 100.0 37 .............................. AAGAGAAATAACAAAAGTGATATCTAAAATAAAAGAT 39946 30 100.0 34 .............................. TTCTGTAAAATATCACTACCACAAGCTACATGTT 39882 30 100.0 36 .............................. TAGCGTGATATCGTGGGAAAACTGCAATTAATGGTT 39816 30 100.0 35 .............................. CACTTTCTAGGATTTATTGTTTCACCGTTGACTGC 39751 30 100.0 36 .............................. TCTAAGGTCGGAACACGCTTTAATTGGGGTACATAT 39685 30 100.0 36 .............................. CTGTGTTTGTTTAGCTCCTGAATAGCTTTATCAATG 39619 30 100.0 36 .............................. TTTATATCACCTCTTATTTTCCTGTTGTTGTGCTTC 39553 30 100.0 36 .............................. TTGGTGCTAACGCAAATAAAAGAAAATGGTGAGGTA 39487 30 100.0 36 .............................. AAAAGCACAGCTTACACAAGAAATTGGGGAAGATGT 39421 30 100.0 37 .............................. TTGAAGTCTGCGAATATTTCTCCTACTTCATCTGCTT 39354 30 100.0 37 .............................. ATTTTTGCAAGATTAGACAATATTGTATAGGGGGTAA 39287 30 100.0 34 .............................. TATATATAGTGCCTAAAATATAGTGAATTACTAA 39223 30 100.0 36 .............................. AAAATGACAGTCGTTTTAGAAGGCAGCGGCGGTTGG 39157 30 100.0 36 .............................. TGCTATTAGAACTATTCCAATGTTGCCTTATGATGA 39091 30 100.0 37 .............................. TCTACATACGGCATGTACTCCATATCATCCGCATAAT 39024 30 100.0 35 .............................. TTAACAACAAAAATATCTTTTATGACATCATTATT 38959 30 100.0 35 .............................. TGAATTGGGATTATACGCAGTCCACTTTTGGTTTT 38894 30 100.0 36 .............................. AGCAGTAAAAGCAAACTGGAGAGAAGATACATTTGA 38828 30 100.0 36 .............................. GGTAGTTGACCCTTATCAAGCCCGCGACCTTAAAAA 38762 30 100.0 36 .............................. TTTTTTGCATGACCATAATAATATAATCCATATTTC 38696 30 100.0 37 .............................. ATATGCTAAGGGGCTTGAAGATGTAGAAACAATAGAA 38629 30 100.0 34 .............................. TGTATACCGTCAATATAAGCACCAAACCATTTAA 38565 30 100.0 37 .............................. TTGTAGGTCTCTTTATGTGCATGTTTGTGTTCTTTTT 38498 30 100.0 36 .............................. TTTGGTGCGTTGAACGGTTGAATAGTGAATTTTTTA 38432 30 100.0 36 .............................. TTAATTTTATTTTTTAAATCGTTCCAACGCTTATCT 38366 30 100.0 35 .............................. TAACTAGGAGGGGTGAATATGCAAACAATACCATT 38301 30 100.0 36 .............................. AGCTATTGTTTACAGAAAAGAACGCGGAATAAGGAT 38235 30 100.0 35 .............................. ACTTATCTCTATACTCTTGTATTTTTTGGTCTTTC 38170 30 100.0 35 .............................. GCGGCACCATTCCAGCCACCGTTACCCCAGCCGAA 38105 30 100.0 36 .............................. TTGTATAATCCTAGTGATAATTTAGAAATAGCCATT 38039 30 100.0 35 .............................. TTTAATGATAGCAGCTTTAGAAATAGAGTTGTTAC 37974 30 100.0 36 .............................. TTTACGCTTTCTGCTGTGTGTTCTACCCAAGGCTTA 37908 30 100.0 36 .............................. TTACAAGCATTTCTAAAAATGGTTCTATACTTATGT 37842 30 100.0 35 .............................. GGTACATTATAATAATACATAGATACACTATAGAT 37777 30 100.0 35 .............................. ATGACATGCGAATGAAGATAGATGCCTTAGCAGGT 37712 30 100.0 36 .............................. TAAGCAAATAAATCTATTGTCCCATGTCTTGTACTC 37646 30 100.0 35 .............................. GCAAGAATGGAGCAAAAATTATATTGCTAATCAAG 37581 30 100.0 36 .............................. TTCCCATCAAATGTTTTAAATATATGGTTAGGTGTA 37515 30 100.0 36 .............................. TAAGAGTATTATGGTTTGTGATGGTAAACCTGTTAT 37449 30 100.0 35 .............................. TATCGTTTGGTCTCATGGTCGTTAACCATTTCAGA 37384 30 96.7 36 ...............A.............. TTACCTGTGAAGATGAGGTTCCCATTTAGACGAATT 37318 30 100.0 36 .............................. GTATACTGTTTGTCATCATTAATAATTAGAACTTCA 37252 30 100.0 36 .............................. GGGGAGATATTGGAAAGGGTACGAGTACTATATGTG 37186 30 96.7 36 .......T...................... TTGGTAACAAAATCCTTAATATTTTCTAAAACTTCA 37120 30 90.0 0 .......T................C.A... | ========== ====== ====== ====== ============================== ===================================== ================== 45 30 99.6 36 ATTTAACATTAACAAGTGTTGTATTTGAAT # Left flank : ATTATATCATAATTATTCATAAATTCTAAGACAATACGAAAAAAGATTACATATTTTTAAGTTTTACTATTGAAAATTATTTATTTATTAAATTTTATAACATTTTAGTCATATGAAAAAAATTATAAAAAAGTATTGCAAAATACATAAATGAGCAGTATAATAATTTTTGTTATTAATGACTCACTAGCTCAATTGGTAGAGCATCTGACTCTTAATCAGCAGGTTCCGGGTTCGAGTCCCGGGTGGGTCACCATATAATTTATAAAATTAAAGCAACTATCATTGATAGTTGCTTTTTGTTTTTTACTACTTGATAAAATTTTATTTACCATAAAATTACCAGCTAAAATTAAGAAAAACTCCTCTAAAGCTTGAAAATTAAACCTTTTTATAAAATCTCCAAAAATCCTATTATCGCTGGTAAAAAACAACTAAAATCCTTGTATATCAATACTTTTAATAGTATAATGAAAATCATAAAGATTAATTTTTCTAGC # Right flank : CTTATTATTAAAAAATTATAAAAGGCTTTTAATAGATTTTGTCTTCTATTAAAAGCCTTTTTTTTATTTAGAATTATTTTTCAATTTCTCTAAAAATTTCTTATCATCTTTGCTTAATTCTACTTTTTCAAGTAAATCAGGTCTATTTGTATACGTAACACGCAAAGATTCTTGTCGACGCCATTTTGCTATTTTAGCATGGTCTCCTGAAAGTAGTACATCAGGTACGCTAAGACCTCTATACTCACGTGGTTTTGTATATTGTGGATATTCTAAAAGCCCATTATAAAAAGAATCTGTTGGCGCAGACTCTCCAGAGCCTAATACGCCTGGAAGCATTCTTGATACAGCATCGATTACCACCATAGCAGGAAGTTCTCCACCTGTTAATACATAATCGCCAATAGAAATTACTTCATCAGCTAAATTTTGTACCACACGATTATCAAAGCCTTCATAATGACCACAGATAAATATTAACTGATCAAAATTAGCAAGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACATTAACAAGTGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 37035-37706 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRST01000016.1 Megamonas rupellensis strain AF29-2 AF29-2.Scaf16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 37035 30 100.0 37 .............................. TTTTTTGCTGGCGGTATGACATGTTTGATGGTATTTT 37102 30 100.0 36 .............................. AAGATGCTTATAAAGAAGTTCTTCATCGTTTAACAG 37168 30 100.0 34 .............................. CTATTATAAGTTCCAGCAAAACTTATAGCTTTAT 37232 30 100.0 37 .............................. AAAGTTATTGGACTAACCACTGCTATGGTCTGCCTAA 37299 30 100.0 34 .............................. GATAGAGCAGTATAGTACAGATTTAGTATTAGCT 37363 30 100.0 35 .............................. TATAAGAGATAGCATTAACCTTGACGCTATTAATT 37428 30 100.0 35 .............................. ATAACCAAATCACCATCAAGTTCATTTTTACTACC 37493 30 93.3 36 ...........................CT. CTGCTACACGTGGAGAATTATTTGATAGATTGAAAA 37559 30 93.3 36 ...........................CT. TGAAAACCAACTCCTTTAGGACGTGGGGGATACACC 37625 30 90.0 22 ..........................C.CC ACAGATCACCCTCACTACAGTG Deletion [37677] 37677 30 76.7 0 .......T....T.......AA.G.G..T. | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 95.8 34 GTTAAGCATTAACATTGTACGGTCTCATAT # Left flank : CAGAATTTATAGCAGGGAAAAAAGCATTGAATAATGCTGGTGAAAAAATGGGAGATTATATTGTAGAAAAGCTTTTAAATTATGGTAGTGGGAATAAACAAAATATAGAACTAAAAGTTATAACCACTGATTATAATAAAGTGAATATGGTAAATAACGCTTTACAGAATATTCGAGGAGTAAATTCAGCAAGGGTAAATAGTTATAATGAAGGTACAGCAACTATTGATATAAAATATTCAGGAACACCACAGAATATTTATAATCAGTTAATTCAAAATGTAAATTGCAATCTTAAACTGCAACAAATTACGTATAATACTTTAACGATAGTAATATATTAAGTTTTATTTACCAGCCGAAAAAGTAAAAAGCCTATGAAATCAATCATTACGAAGGATAGGCAGAAAACTGAAATCGGCTGGTAAAATTTCTATGAAAGATTGAAAAATAAGGATATATAGGCTATAATGAAGGAAAAGAATATTGATTTTACTGCG # Right flank : TAGATTGTAGGATTATGTTAAATGTATTTATGGTGAATTTTTGATTAATATTAACAAGTGGTGCTTAGCAGTAAAATGAAAGAAGACATAACTTAGATTAAAAGTTATGTCTTTTTTTATAAAAATTTTAAAAGCTATGCCGAATTTTGGAAAAATCAGGGGATATATATAGTAAAGATTAAAAAGGGTGATGAAAAAATAAACGAATATTAAACTTAAAAGTAAACTAAAAATTTTTGATTAAGATTGGAGTTAGTATTATGAAAAACAAAGCAAATGAAATTAAAACAAAAATTTGTATTCCAAAAGGAACTTTCGGTGGAAATTGTTTAGGTTGTCGGTATTGGGAAGAATATAATAGAGACTCAAGCGGTAGAGCATTTTGTAGTTATTATGATAATTGGTATTATCCATCAGAAAGACGAGGTTGCTTTGCTCGGAAGGAATAAAAGAAGATGAGTTTTTGCCAGCCGAAAAAGTAAAAAACCTATGAAATTAAG # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCATTAACATTGTACGGTCTCATAT # Alternate repeat : GTTAAGCATTAACATTGTACGGTCTCACTT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 39143-39481 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRST01000016.1 Megamonas rupellensis strain AF29-2 AF29-2.Scaf16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 39143 29 100.0 37 ............................. GCCTAGAAAAATCTAGGCAGTGGGCTATTAGATGTGT 39209 29 100.0 35 ............................. GATGCTAATTATATTATTCGTGCTAAATGGGTTAA 39273 29 100.0 35 ............................. TTAAATCTTATCGTAATATTTAGGGGGTTTACACT 39337 29 100.0 36 ............................. TTTTGTTCCAATGTAAAACTCCTTTCCACTAACGTA 39402 29 89.7 23 ..........................CTC CACAGATCACCCTCACTACAGTG Deletion [39454] 39454 28 79.3 0 .......T....T.......AA.G.-... | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 94.8 33 GTTAAGCATTAACATTGTACGGTCTCGAT # Left flank : TTTTTTTATAAAAATTTTTAAAAACTGTGCCAGATTTTAGAAAAAGTAGAAGATATATATAGTAAAGATTAAAAAGGGTGATGAAAAAATAAACGAATATTAAACTTAAAGGTAAACTAAAATTTTTTGATTAAGATTGAAGTTAGTATTATGAAAAACAAAGCAAATGAAATTAAAACTAAAATTTGTATTCCAAAAGGAGCTTTCGGTGGAAATTGTTCAGGTTGTCGGTATTGGGAAGAATACAATAGAGACTCAAGTGGTAGAGCATTTTGTAGTTATTATGATGATTGGTATTATCCATCAGAAAGACGAGGCTGCTTTGCTCGGAAGGAATAAAAGAAGATGAGTTTTGCCAGCCGAAAAAGAAAAAAGCCTATAATATAAAGCATTAAAAAAATAGGCAGAAAACTGAAATCGGCTGGTAAGATTTCTATGAAAGATTGAAAAATAAGGATATATAAGATATAATGAAGAAAAAGAATATTGATTTTACTGCG # Right flank : TTTAGATTGTAGGATTATGTTAAATGTATTTATGGTGAATTTTTGATTAATATTAACAAGTGATGCTTAGCAGTAAAATGAAAGAAGACATAACTTAGATTAAAGTTATGTCTTTTTTTTATAAAAGTTTTTAAAAAGAATGCCAGATTTTAGAAAAAGTAGAGGATATATAAAATAGAAAGCAATAAAAATGTAAATAGAAACACTCCTTTTGATTTTCGGTATAGGTTATTTGATAGCTTATACCGAAAACTTTTTTTAATAAATAATGCCGAATTTTAAATTTGCTAGGTAATATATATAGTAGAGATTAAAGATGATATTGAAAAAATAAATATAAAAATAAAATAAAGTTTTATAGATAAGATGGGAGATTTTATGATGAAAATAAAAACAAGTATCTTTAAAGAAATTATAGAAAGTCCTGCACCGCCCCCAGAAGTTGGCGGTATAATCGGTGGCAAAGAAGATATTATTACCTGTTACTTTGCAGATAAAGG # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCATTAACATTGTACGGTCTCGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 40433-40722 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRST01000016.1 Megamonas rupellensis strain AF29-2 AF29-2.Scaf16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 40433 30 100.0 36 .............................. AGAAATTGGGGAAGATGTATCCAATCAAATTAATAC 40499 30 100.0 35 .............................. CTATCTTTAGAATAGCGGAGAGGATATTTTACTCC 40564 30 100.0 34 .............................. GTTGCTTCTGCTCGGCAACCTATATTTGGTGATT 40628 30 90.0 35 ..........................CAT. AATACAGAGTAATTATTACTAGTATGAATGCAGAA 40693 30 86.7 0 ....G.....................CAG. | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 95.3 35 GTTAAGCATTAACATTGTACGGTCTCTCCT # Left flank : AATCGGTGGCAAAGAAGATATTATTACCTGTTACTTTGCAGATAAAGGTAGTAAGGAAAATTGCTATGATTCATATTATCCAAGTACAGATTTATTAAATAAACAGATAGATAAATGGCAAGATGATGGAATAGATTTTTATGGAATTTATCATACACATTTTGCTGGTGATGATGGTTTATCTAGCAGTGACCGTAGATATATTGTCAATATAATGCAAGCAATGCCATCACAAATACAGTATTTATATTTTCCTATAGTATTTAAAAATAATATGCTTATATATAAAGCTATACGTGAAAATAATATAGTGAAGATAGTTCAAGAAGATATTGAAATAATTTAAAAAATTTACCAGCCGAAAAAGTAAAAAGCCTATGAAATCAAGCATTAAAAAGAATAGGCATAAAACTGAAATCGGCTGGTAAAATTTCTATTAAAGATTGAAAAATAAGGATATATAAGATATAATGAAGAAAAAGAATATTGATTTTACTGCG # Right flank : TGACCATATAAATACTCAAGTTGATGATACTGATGTGTTAAGTATTAACATTGTACAATGTGATTTAGATTGTAGAATAATGTTAAATGTATTTATGGTGAATTTTTGATTAATATTAACAAGTGATGCTTAGCAGTAAAATGAAAGAAGACATAACTTAGATTAAAGTTATGTCTTTTTTTTATAAAAATTTTTAAAAAGAATGCCAGATTTTAGAAAAAGTAGAGGATATATAAAATAGAAAGCAATAAAAATGTAAATAGAAACACTCCTTTTGATTTTCGGTATAGGTTATTTGATAGCTTATACCGAAAACTTTTTTTAATAAATAATGCTAAATTTTGGAAAAAGTAGAGGATATATAAAGTAGAGATTAAAGATGATAGTAAAAAATAAATAGGAAATAGAAAAAAAGATATAACATAGATAAAAAATTTTAAAAACAATGCCAGATTTTAGAAAAAATGGAAGATATGTATATTAGAGAATTGATGAGGTGG # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCATTAACATTGTACGGTCTCTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 44934-45354 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRST01000016.1 Megamonas rupellensis strain AF29-2 AF29-2.Scaf16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 44934 29 100.0 39 ............................. CTAGGCTTCGTTATACTGGTAAGCCATTCCCTTACCTTC 45002 29 100.0 35 ............................. CTTGTAAGCACTACAGTTAGCGATGGAATGTACTA 45066 29 100.0 36 ............................. TCTTATTGACGCTGTTAAAACATTGGGTGTTCCAGG 45131 29 100.0 37 ............................. TATGGTACGTGAGAAAGGGCTCGAACCTTCAAAATCA 45197 29 100.0 35 ............................. AGTGGGGGATTTTCAGACTTTTGTAAATACAAGAG 45261 29 100.0 36 ............................. TAACGAATAGCGTCGATGTTACGATTTGTTTCGCAG 45326 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 7 29 100.0 36 GTTAAGCATTAACATTGTACGGTCTCGTC # Left flank : AGCAGAAAATAGATATAGCCATTTTCTTGACAATTATGCTGTAATGTTCGAGATTTAAAAGATATTAAAATAAAAGAATAGCCTGATGAAATTTTCATTGGGCTATTCTTTTATCAAAAATAATATTTAATTTTTTATAAACTTAAAAAAATCATGCTGAATTTTAGAAGAAGGAAGAGATATATATAATAGAAAGAGATAAAGAAATATAGATTAAATTAAAAATAAGAAGGGAGAAATTATTATGGATAAGAGATTTAAGCGGTAGAGCATATTGCAGATATTATGATGATTGGTATTTATTCATTAGAAAGACGAGTTTTGCTCGAAGAGATTGAAACAAAATAAAAATTTACCAGCCAAAAAAGTAAAAAGCCTATAATATCAAGCATTAAAAAAATAGGTAGAAAACTGAAATCGGCTGGTAAAATTTCTATGAAAGATTGAAAAATAAGGATATATAAGGTATAATGAAGGAAAAGAATATTGATTTTACTGCG # Right flank : CGCTGTATCCACGTGTCCAGTCATTATGTTTAAAGAATGGTTAAGCATTAACAATGTGTAATGTGATTTAGGTTGTAGAATTATGCTAAATGTATTTATGGTGAATTTTTGATTAATATTAACAAGTGATGCTTAGCAGTAAAATGAAAGAAAGACATAACTTAAATTAAAGTTATGTCTTTTTTTTATAAAAATTTTTAAAAACCATGCCGAATTTTGGAAAAAACAGGAGATATATATAATAAGATAATGATTTAAAAGAGAGGAAGATATTTATGAAAAAATTATTGATGGCTTGGGTTTTAGCGATTGTAATTTGTTTACAAAGTGGTGTTAGTATGGCTGCTACTGAAGATATGGCAAAAATAGATAGTATAGAAGTAAAAGAATTAGGATTAAATCTTATAAAAGTTGAAATGCCTTTAGAAAAAGGTTTTGAAAGTATTTATGGACAAGATTATGCACCACTTACAATTATTGTTTACAATGATAAAGGCAAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCATTAACATTGTACGGTCTCGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //