Array 1 319342-320368 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JADNLY010000002.1 Streptococcus salivarius strain 1001713B170131_170501_D3 NODE_2_length_381281_cov_99.4955, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    319342	    36	 100.0	    30	....................................	TTTATAAAGCTGAGTATCGTGAAGATGATA 	
    319408	    36	 100.0	    30	....................................	TTCATTTGGTACGACACCGCCATTAAATTC 	
    319474	    36	 100.0	    30	....................................	ACATAATCAGCTGGGTTTGTGCTGTCTGCT 	
    319540	    36	 100.0	    30	....................................	TACTACTCTACTGGTACCTCCCCTATAAAC 	
    319606	    36	 100.0	    30	....................................	TGAGAAGCAGGTTGTTATCGGCACTGGAAA 	
    319672	    36	 100.0	    30	....................................	CCTATTGATTCAACACCATCATAATGATTA 	
    319738	    36	 100.0	    30	....................................	GGGCAATGCTACGGAAGCCATGACTGCTCT 	
    319804	    36	 100.0	    30	....................................	AAAGGTATTATTCCCACTCAAATCAAGGGA 	
    319870	    36	 100.0	    30	....................................	CCAAGACCGATATACCAACCAACTTGGTCA 	
    319936	    36	 100.0	    30	....................................	ACTTACAAACGAATGAGAGGGCTTGAATAA 	
    320002	    36	 100.0	    30	....................................	ACAAATAAAACACTGGGTTTTGATTCGCTA 	
    320068	    36	 100.0	    31	....................................	TATTTAAAAAACAATATGTGTAGTAGTCTTT	
    320135	    36	 100.0	    30	....................................	AGCAATAATAACTCAAATTCTTCACTATTT 	
    320201	    36	 100.0	    30	....................................	TTATGCCACGAATGGCACGTTTGTCGCTCT 	
    320267	    36	  97.2	    30	................A...................	ATTCACGTTATAACGTTTAAACCCACTCTT 	
    320333	    36	  94.4	     0	.............................T...T..	|                              	
==========	======	======	======	====================================	===============================	==================
        16	    36	  99.5	    30	GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	                               	       

# Left flank :   AAGAGAATTTTAGTATTCGTCAATAGCTTGTCATATTTTTCTAATGATGAAATTTATCAAATCTTGGAATATACAAAGTTATTACAAGCTGATGTATTATTTTTGGAACCTAGACGGATTGGGAGGTTTCAACAATTTGTTTTAGATAAAGATTACATTTTGATGCCCTATAATAACTTGTAATTTGGTAATGAGTATAGATAGTCTTGAGTTATTTCAAGACTATTTTTTTAGTGTTTAGTGTTTCTGTATAAAGTTGAGTAGAAGAATCATTTTGTTAGAGAGTAGATTATAAGGTTTTGATAGAGGAGTTAAATTGGTTGCCATAAGATTCCTAAGAAATACTCCAATATGGTGACAGTGACATTTTGTCTAAAACGTTGATATATATAGCTTTTTAAGGTATAATAAACATAAAAATGGGATTATTTTGAAGCTGAAGTCATGCTGAGATGAATAGCGCGATTACGAAATCTGGTAGAAAAAAGACAGTCTACGAG
# Right flank :  CCTTTGTTATAACGATTTTCGGTTGACTTCTCTTCAAACGCATCTTATCATGGAGGAGTATAGTATTGAAATGGGGGAAGAGACATGTTATACGAATATCCAGCGATTTTTCACACGATTGAGGAAGGTTATCAAATTAGTTTTCCTGATTTTGGTCGTAGCATTAGGGCAGATTCTTTACCTCTTGCCATGACAAAAGCGTCTGTGTTCTTATCACATATTATTAAGGGGTATGGAGATAAGGCTTTACCTGAGCCGACTGCGGTAAGCAGCATTCCTAATGAGGAAGAACTCGTCGTGTTAATCCAAACAGAGCTTGATTAAGACTAAAAACTCTCGGAAGATTAATTCCCGAGAGTTTTAGGTTTTATTGGCCACATAGACGCCCAAGACGACTAAAATTCCTGCAAAAATTTGTAAATACGAGAAGGGTTCTCCTAAGACGACGACAGCCGCTAGAATTGAGATAATTGTCGAAATCCCAATAAAGGATGCTGTTC

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//