Array 1 348042-348816 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734695.1 Planktothrix agardhii NIVA-CYA 15 scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 348042 37 100.0 35 ..................................... AACGGTTGTTTCACCCTCACCATGTGGTAGTTTCA 348114 37 100.0 36 ..................................... CAAATTTATCTATCCAGACGGTAAAGTTGAACTCCG 348187 37 100.0 41 ..................................... CAGCGAGGGTTTTATCTTGTCATTCAGGCATTAACTCAAAA 348265 37 100.0 35 ..................................... TAGCTTAATTAAGTTCTCTTGTTCTAATGTCATTT 348337 37 100.0 36 ..................................... CAACAATCAAACCAACAACAACCTTAACGCTACTAT 348410 37 100.0 39 ..................................... GCTTGAGATATGAAAGTAATCATGTAGATGTTGTGTTTC 348486 37 100.0 35 ..................................... CTCTGGTTAATGGAAACCGCCGCCAAATACCAAGA 348558 37 100.0 37 ..................................... AGAGAGTTTTATCACCCATTCCCAATCCTATAAACCT 348632 37 100.0 36 ..................................... ATTAGCCATCTGCGCGCGAACCTGTGTTAATTGAGT 348705 37 100.0 38 ..................................... TTAATTAGTTAATATTTAATTGTCGAATTAATAGTTAA 348780 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 11 37 100.0 37 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGATATCCTTTTCCCCTAGAACAGAGTGATCT # Right flank : GTCTGCCGTTTGAAACCCTTATGGGGCGGTCATTCTGGAGCCCATTTTCGTGAACCTCAAAAAATGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGACTCAGGAATATAAACTGTTGATTTGTCAAGGTTCTAGCGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAATAATAATAAACCGAAACCCGCCTCTTGTCAAGGGGAATATTCTATGATATTGCGATCGCCCCTAACCCTTAACTTTTAACAATTGCCCCAAAATCCGCCAAAACCCGGGCATGATTTCTTAATAATCCCAATAAATTCAAACGATTACGTTGAATATTCAGATCATCATCCATCACTAAAACACTTTCTGGGCCATCAAAAAAACTGCTCACCGTTGGGGTAATTTCTGCTAAAGCTTCCACCAATTGACGATAATTTCTGGTGGCTTGAGAAGCTTTTGTTTTCGGAACTAACTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 263742-263080 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734694.1 Planktothrix agardhii NIVA-CYA 15 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================ ================== 263741 36 100.0 37 .................................... AAGGAAACTATCATGCACCTTCATAGTTTCCAAGTGT 263668 36 100.0 41 .................................... TAGCTAGGACGAGCAATAGCTAAATTAGTCATAACTTCAGT 263591 36 100.0 42 .................................... TATAAAGGGTAGCATTTGCTATCCTTTTGTCTTTCTCTTGTA 263513 36 97.2 41 .......................G............ GCCCGAAACATTAACTGATTGTCTCGGTTAATTTCTGCCGA 263436 36 97.2 43 .......................G............ TTGTGAATTAAATTATTGCTACCTCTCATCCCCTGTAATTCAA 263357 36 100.0 50 .................................... TCAGAATAAAAACACTATAAGAAGGATTAAACCCCTTCTTATTTTCTTTA 263271 35 88.9 0 ........................A-...G....G. - TC,C,G [263238,263241,263249] Deletion [263237] 263232 36 77.8 80 GCAA.A....C...............C...A..... ATTAGATTATTGTAAAAATCCTCATTGATTGGAAACGTCAACCTAATTCGTAATTCGTAATTCGTAATTCGTAATTCGTA 263116 36 77.8 0 A.T.A...........A.............C..TCG | C [263082] ========== ====== ====== ====== ==================================== ================================================================================ ================== 9 36 93.2 42 CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Left flank : AACAGTTCTTTTAATCAAAACGTTGGAGCATATTGAGTTGATTCACTAGACTTAACAGGATTTGGCAGGTTTGTTAAATCTACGGATTTAACCGATGTGATTCTCTCAGCACTTAACTATTTACTGACTTTACCACCCTGTGATACCTTATGTCTTGGATTTCACAATATTTATGGTTTAAGTCACAAAACTCAATAATCCTTAAAAAATCTATACTTTTAGAGCAATATTGGCTGAATACTTACAATGAACTAGCGTTGAGCGATGTTGCTAATTGCCTCGTTAGTTCAATCTAGGGAACACCTCCCTATAGGTTTTTGCGAGGCTGAAGCTTGAATGTCTATGATATCGATTCTGCGGTTTATAGCCTCGCCAGTCCTTCCTGTAAGGGTTCTGACGTTTTGATTAAGGAGTAAAATCTTGTTTCAGCCGATGAAATTTCCGCAGCCTCGCAAACCCCCCCTAGACAACCGATGACGTCTGGGTTTAAAATGGGAGGA # Right flank : CACTAAAAAAAAGCCCCAGTTTTTACTAGGGCTTTAGTGGTTATAGCAGTCGCCAGACCTATTAGGACAAAGAGTGATGCAGCAAAGCTAGACGGTGAAGTCTTTTCCTCGGGTGTTCCCTCCCCCCCTAGCCCCCCGTGCACGGGGGGTTGGGGGGGCTGTTCCCTGCTATAAATATGGTTAGGTGTAGAAATAGGGCTTGCTGAAAAAAGATGAAAAGCCGAGAAAGTCGGGAGGAGGAGAGGGCAGAAAGGGATAATGGTGCAAGGAATTAGTAACAAAAAGTGAATTCAAATTTTATTGAACCTTGCCTCCAGATTTGCTTTTAGAAAAATAAGTTTGAAACATTGCCTTAGCAATAGGGGCGGCGGACTTAGATCCATAACCCCCATTTTCCACCACGACCGCGATCGCAATTTCAGGATTTTGGGCGGGGCCAAAAGCCACATATAGGGAGTGATCGGTTTGTCCCGATACCTCCGAAGTTCCGGTTTTCCCCC # Questionable array : NO Score: 4.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.86, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : CTCCCTACTCGCTAGGGAAATTAGTTGATTGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 274848-275407 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734694.1 Planktothrix agardhii NIVA-CYA 15 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 274848 36 100.0 37 .................................... TGCTGCCTTGGCGTTAACGATTGCTTGGGTTTGATTA 274921 36 100.0 41 .................................... ATCATTGTCGAGGTAGTCTGGCATTGCAAAATCTCCTTTGT 274998 36 100.0 35 .................................... AATCCGAAATAGTCGTAAGCATAATCAATTCGAGA 275069 36 100.0 35 .................................... GCAATTGATTGATTGTTGAGTGATGACATGATGTT 275140 36 100.0 42 .................................... TGTCTTCTAAGTTGTGCAGGTAATAAGTGTCCAATTCATAGG 275218 36 100.0 44 .................................... CTGGACTATAAAGCCTAGTTTTGTTCCCGATTCATAAATAACCG 275298 36 97.2 38 ...........T........................ CCCCAAAGTTTCCCGATAGTTCCCCAATCCCCTTTAGA 275372 36 97.2 0 ...........T........................ | ========== ====== ====== ====== ==================================== ============================================ ================== 8 36 99.3 39 CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Left flank : TTGAAGGATACAAACCTTATGAAATTCGCTGATGTTATTCTATATTGTTGCCTATGATATTCCCTGTGATAAACGTCGTCGCAAAGTGGCGAATTTATTGGAAGGATATGGAAAGCGGGTTCAATATTCGGTTTTTGAGTGTGTGTTGGCTCAATCAAAATATATTGAGTTACAGAAACGCTTGAAAAAACAAGTGAATCTGGCTGAAGATAACCTGCGGTTTTATCCGCTTTCCCGCCATACCTGGGGAAGTGTGGAAACTTGGGGTCAGGGGCCAAAGATTACTGAGTATCCGAGTTCAATAATTATTTAGGGTTGCTGGCGAGGCTTAGGCAAAATCGCTATAATACCGATTCTGGTGTTTATAGCTTCGCTATCCCTCTGGATATGGGTTCTGACGTTTTGATTCAGGAGTAAAATCTTGTTTCAGCCAACTGTTTTTCTGAGCCCCGCAACCCCCCCCTAGACAACCGATGGCATCTGGGTTTAAAATGGGAGGA # Right flank : CGCTAAGACAAAATTAGTCGAAGTTTTTTATTAATGTGAGAGGTAACTGTTGACAAAAAGAGTAGATTTCGAGTAATATAACTTTGGGGGGCCGCTCTACCGCATAGAAACAAGGTCTCCATAGCAGTAAAAGCATTCCCCCAGCCGAAGGGTTACGGCAAATTCCTTTGTCATTACCTAGAAATAGGTAGTTAAGACAAAATTAGTCGAAGTCTTTCTATTAATGCGGAAATCGAAAAGGCTTCGACTCCACTCGACTTCGCAAATAGGAAAAAATTAGAGACTTCCGTAGCGACAAAATCTCTAACTCTTTAACTTTTGAAAAACTCTAAAAATACCCTTTTAAAACTCAAACAAACTTACTTTCCCCACTCGCTAGGAAAATTAATTCAATCCGATCGCACAAAAAAAAAGCCCCAGTTTTTACTAGGGCTTTAGTGGTTAAATATAGTTAGGTGTAGAAATAGGGCTTGCTGAAAAAGTAACAGAAAAGGAATAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : CTCCCTACTCGTTAGGGAAATTAATTGATTGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 3 875407-876017 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734694.1 Planktothrix agardhii NIVA-CYA 15 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 875407 37 100.0 37 ..................................... ACGTCAATGTTCAACTTTGGAATGGGTTATGGCATTT 875481 37 100.0 35 ..................................... ACCTAGTCTTGGCTTGCTACCGACCTATAGGCAGC 875553 37 100.0 38 ..................................... CCTTCAAAGATATTTACCCGCCCTCGTTGGTGTCGGAA 875628 37 100.0 33 ..................................... ATAACCCAGTTGGGCGGTATGAGTTACCTCGGA 875698 37 100.0 37 ..................................... CAGGGAGTTGACGAAGTTAAGTGGTGTATGCCCAATG 875772 37 100.0 33 ..................................... CAGCAACTAAACCGTCAAGAGCAAGTAGTAACA 875842 37 100.0 36 ..................................... ATGGATGGATGGGTAGTTGGATTGATGGGATTTTTA 875915 37 97.3 29 C.................................... AAACAAACCCCTTAGAAGGAATTTGTTAG 875981 37 94.6 0 C.............C...................... | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 99.1 35 ATAACAATCCTCAGTAATGGGGATTGCGAATTGAAAC # Left flank : TGGGTGGTAAGGTTTCGAGTGATGATCTCAAATTGTTCTGGGAATCATTATTAAATTGTTGGGAATTTGATCGGAGTTCTGCACGTTCTTCAATGAATTGTCAAGGGTTGTATATTTTTACCCATGATAGCAAATGGGGTAATTATCCATCCCATAAATTGTTTGATTTGCTGTCAGTCGAAAAAAATACGGATATCCCTCGAAGTATTAACGATTACGAGATTAATCTGGGGGATGTGCCGGACGGTGTAGCTTTGTGGGAATCTCGATAACCTATAGCTGTTTTGGGGCGTTTATGCCAGAACCCTTATTCTGTAAGAGTTCTGGCTGTTTTTGTAAAAATAGGTTGACGAAATTTGTGTAAGCCTTGACTTGAAGGCGGTTCAAGGATTTTTTTTAATACAAAGTTGACAAAAAATAGAAATATTTGCTATGATCAACCTAGGTTCACGAAATTGCACCTTGAAAATTAAACATCACAGGGGTTTCGGCAGCCTGCT # Right flank : CAAAGATAAAATACTAATTACCCTAATTATTAGTATTTTATCTCTCTAATTAATTTAGCATAAGTTTCCGAAGGGCGATCGCCTAAATGATCCTCAATTTCCCTTTCTGTTCCCCGATTAAAATTAATACTAAATAACCCAAACCTGGGCGTATAAGAGCCCCATTCATAATTATCCGTTAATGACCAGTGCATATAACCCAAAATCGGAATATTTTCCTTTAATAATTGTTGAATTTGACGAACATGAGCTTCTAAAAATTGGCTGCGATGCAGTTGGTCAGAGCGATGAGTGGCGATACTATTATCCGGTTTTCGACGTAACGCCATGCCATTTTCAGCAATTAAAATCGGAAGGTTATATTCCTGAGCATAATATTTACAGAAAAAAGATAATCCTTCTGGGAGCGCTCGCCAGTCCCACCATTTACTCGTAATTCCGGTCATCAACCAATTTCTTAACCCTTTAGTTTTAAATTCAAAATCAGAAAAAGACGGTAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAACAATCCTCAGTAATGGGGATTGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 4 1448564-1447766 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734694.1 Planktothrix agardhii NIVA-CYA 15 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================== ================== 1448563 36 100.0 36 .................................... TTGGTTGATTCTGATAGGCTTGATGCTCAGGAATTT 1448491 36 100.0 41 .................................... TCCTGAATACTCGCTTTAGCCTGTGCTAGTTGCACCTTAGA 1448414 36 100.0 39 .................................... TGCATATGGCTTGGGATAAACACTTCAGGTTTTTTCTCT 1448339 36 100.0 36 .................................... TTTCAGCGATTCTTTCTATCGTAAATACACAGATCA 1448267 36 100.0 42 .................................... CATTTTTAGATCCTCTGATAATGTTTAGACTGATAACTTTTA 1448189 36 100.0 51 .................................... AGTATGAGCTTTAGAAGCTCTAACACATGAAACTCCTCTGTCCCATCTAAC 1448102 36 100.0 46 .................................... ACCCAAAATAGGGTTTTTAATTCTTCAAACTTAGGATGTTCTGTAA 1448020 36 100.0 40 .................................... ACAATGCCAACCGGATTTTGATTTGCTCTTTGACTGCCTT 1447944 36 100.0 36 .................................... TTTTCTCACTCAACCCTCCTTGTTCTTGTGATTACT 1447872 36 100.0 36 .................................... GCGGTGTCCATGATGCTCGTAACCGTCGGAGGCTCA 1447800 35 91.7 0 ...................-..............CT | ========== ====== ====== ====== ==================================== =================================================== ================== 11 36 99.2 40 CTCCCTACTCGTTAGGGAAATTAATTGATTGGAAAC # Left flank : ACAAATCCAGAATTAGCAAAACAGTTAGGAGAAAAAGGTTATCAAAGAGCCATGACCCAATACACCAATAGGGCACTCGCTCAAGAATTGTTAATTTTTTATCAACAATTACTTGATCGCTGATGTTATTCTATATTATTGCCTATGATATTCCCTGCCATAAACGTCGTCGCAAAGTGGCGAATTTATTGGGGTGAATTTAGCTGAAGATAACCTGCGGTTTTATCCCATTTCCCGCCATACCTGGGGAAGTGTGGAAACTTGGGGTCATGGGCCAGAGATTACTGAGTATCCGAGTTCAATAATTATTTGATCTTTTCTGCGAGGCTCAGGTAGAATCGCTGTAATGCTGATTCTGTTGTTGGTAGCCTCGCTATCCCTCTGGGTATGGGTTCTAGGGTTTTGATTAAGGAGTAAAATGTTGTTTCAGCCGATGAAATTTCTGAGCCTCGCAAACCTGATCTGGACAACCGATGACGTATGGGTTTAAAATGGGAGGA # Right flank : CGTTGAAATAGATGGGGGGGTGAGTTTCTTNNNNNNNNNNNNNNNNNNNNGATTGGAAACTCGTTGAAATAGATGGGGGGGTGGAGTTTTCTTTCGTCAAAAATTTTCATCAACCCCTTTAATCAATCGCTATTTAACGATTAATTATCAACTTAAATTAGAGCAAATAGACAAACTAAAAACTGGGTTAGATGGCTTTAGACCGTTTTCAAATAAACGACCAGCTAAAACCCATCTGCTCTTGTGGTTACTCACGCAGAAAAAAAGATCTGGAAAAAGCTTGCATGATCTGGGTGGTTGTGCTACATTAATAAATTGTCGGACGCATAGCTCAGTTGGTTAGAGCACCACGTTGACATCGTGGGGGTCGGTGGTTCGAGTCCACTTGTGTCCATTAATTTAAAACTCCTCGGATTCCTGCACAGTATGGATTCTCTCTGTCGAGTGTCAAATTATATCAAAACAATATTATCCTGAATATCCTCAATCCAATTAAAAAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGTTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 5 2951700-2954341 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734694.1 Planktothrix agardhii NIVA-CYA 15 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 2951700 37 100.0 37 ..................................... ATTAGGTTTTCTGCGGAAATCATGTTATTATGTCCTT 2951774 37 100.0 38 ..................................... TTTTAATTGTCGATTCTATTTGTATTCTTTAATGATAG 2951849 37 100.0 36 ..................................... GAGGAGCTTATTAATTAATTTATTTCTTCATAAAAA 2951922 37 100.0 38 ..................................... TGTAGGTTAACATAGTCCTCTCCGAGAGTCCTTGACCG 2951997 37 100.0 44 ..................................... GAAAATTAATGACACGCTAAAAGCAGTTAGCGCAAGTGAACTTT 2952078 37 100.0 34 ..................................... AATACTTCGAGCCTCGTTTTTTAAATAAAGCGTT 2952149 37 100.0 38 ..................................... AATGGGTTCAATTTTTACCAATTTTTGACTAATTTTAC 2952224 37 100.0 42 ..................................... GATCAACTTTTTGCCAACATGAACGACGCCGATTTAAAATCT 2952303 37 100.0 37 ..................................... TTCATAATATCATGCGTAATGAGTCTATAAGTGAGAA 2952377 37 100.0 36 ..................................... GTCTGAAAAATTTGTCTATTATCTTCATTGACCCAA 2952450 37 100.0 41 ..................................... CTATAAGGTGCAATCGGGACTATAGAAAGAATGGGATTGAT 2952528 37 100.0 35 ..................................... CTAGAACAACGGGCGCAAGTGTCGCATAGTTCCGA 2952600 37 100.0 36 ..................................... TTACCTTATGGAACAGTTCAACCTCAACCTGCACAT 2952673 37 100.0 39 ..................................... TCCTGTTTACGCTAGACGGGAATCAGACTTAGTTAAACA 2952749 37 100.0 40 ..................................... CCATAAAAGAGTTAGGAGCGCAGACGCTTGTATCAAAGAT 2952826 37 100.0 40 ..................................... CTAAACGTATCTTATTATCTAATCAGACTACAGCCGTAGT 2952903 37 100.0 37 ..................................... TAAAGTGTGTTTTATTATAGGCTTTGTTCATGGAAAC 2952977 37 100.0 37 ..................................... CTGGGGGGATAAAGTAGCCAGAATCAATCTTTAAAAA 2953051 37 100.0 36 ..................................... TTTGAGGAATCGTCGATAAAAATCGGTAGTTCTGCT 2953124 37 100.0 37 ..................................... AGTAAGCATTTTTGGGTCGCGTTGTCATCCTTCAATC 2953198 37 100.0 38 ..................................... CATTAAGACTTGCCACAATTGGACGGGATCTCCTTTTT 2953273 37 100.0 37 ..................................... ATGGCTGATTCAGTGGTATCAATATCAGGAAGTTGGG 2953347 37 100.0 35 ..................................... AGAGAGGAACTGATAAACCCAAAGATTAAGAACGG 2953419 37 100.0 40 ..................................... TTGGATCAACAATCAATAGCTCAGAACGCATCCGTAGAGT 2953496 37 100.0 39 ..................................... CGTCAATCGGTTAATGAAGCATCAGGAAACGAGATTGAA 2953572 37 100.0 36 ..................................... GTCCCAAAACCCGTAAACCAATCAACATCGCTACTA 2953645 37 100.0 36 ..................................... CATCGAGGATTGATCGCTGCGATGAATTTTCTGCAA 2953718 37 100.0 38 ..................................... ATCTCCACGAAGGCTGAGTTCAAATGTTCCCCTGTAGT 2953793 37 100.0 36 ..................................... TTTCAATGGTGGAGAAACGGATCGAGGCTTACTGTT 2953866 37 100.0 35 ..................................... TTATTAACGATGTACAGTGTCTATCGTTTGGTAGA 2953938 37 100.0 37 ..................................... AATTAATGCTTTAGCTTCCGCCGCGTTTCTCCCTATT 2954012 37 100.0 37 ..................................... CTAAAATGTCACAGAGTGAAAACCAGGGAATATAACT 2954086 37 100.0 36 ..................................... CTGAGTTAGATAATGTTGAATTAGTCTGTTATTGTA 2954159 37 100.0 37 ..................................... TATTTTAAACATGGTTGTTTATTTTCTTCCCACCATT 2954233 37 100.0 35 ..................................... TTCCCTTCCGATTGAGCTAAAAACAATTTATCTGA 2954305 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 36 37 100.0 37 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : CAAAACGTAGGTATTTATTTATAGTTACCTACGTTTTGTTGAAAAAACAGCTAAATTGCCAAGCACTTTTTTCAGATATTTAATTAATCTTGACCAACTCGCATAAGCATCGACTTCAATCCATTCATAATATCCTCAAGAGATTCAATAATTTTTAAGGTTTCTTTTTGTTCAGTTTCATCATCTAATTTAGACAAAAATTGAAATAATTGGTTAATTCTTTCTTCTTTTCTTTTTCTTTTTTTAATTATTAACTAATAGTTTGAGCTAACTCCAGTGGGAACGCCAGGGCTGTTTCATCAGCCAAAATTTATGTACAAACAAGCTAAAGATCGTTGATATTTTCGGCTATCATTCTTTGAGTCATTGTCGAAGAATAATAGCCATTAATTATGAGAAGATTAAGAACTATAGCAATCCTATTTGAGTTGTGTAAAAGGGAACAGGGGTAATATTTCTGACTGTTTCATGTCAGTATTAAAATGTTACAACCTATTATA # Right flank : GTCTGCCGTCTGAAACCCTGATGGGGCGGTGATTCTGGAGCCCATTTTCGTGAACCTCAAAAATTGCCTCATTTCAGCCCTCGTTATTGCAACAGATTATCAATAACTAATCGGACTCAAAAGTATAAACTATTGATTTGTCAAGGTTCTAGCGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAGTAATCATAAACCAAAACAATTTTCTTGTCAAGGGGAATCTTATATGATATTGCGATCGCCCCCAGACCCATGACCTCAAATAAAAAACCCCGCCTCCAACGGAAACAGGGTCAACGTTATCCTATTCAATTCAACTAGATGACAATAGCCTGATCTTGACGGGGGAGTTCAGACCCATAGGTAATTGTGCGTTTCAGAGATCCCGCATCCAAAACATAAATCCGTACCGAATCTTCCGTAGGTTTAACTAACTTTTCAATTTGGTGTTGTAAGTTCACAAACTGAATACTGGTTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA //