Array 1 42851-43672 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGJG01000018.1 Escherichia coli strain SI-P078 sequence018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42851 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 42912 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 42973 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 43034 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 43095 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 43156 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 43217 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 43278 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 43339 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 43400 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 43461 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 43522 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 43583 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 43644 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69372-70620 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGJG01000018.1 Escherichia coli strain SI-P078 sequence018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69372 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 69433 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 69494 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 69555 29 100.0 32 ............................. TTACAGCGCGTTGCGAAACGCTGCGGCGATGT 69616 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 69677 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 69738 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 69799 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 69860 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 69921 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 69982 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 70043 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 70104 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 70165 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 70226 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 70287 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 70348 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 70409 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 70470 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 70531 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 70592 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //