Array 1 9812-15393 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKGF01000082.1 Lacticaseibacillus paracasei strain FAM3248 FAM3248_scaffold_0082, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 9812 28 100.0 33 ............................ AAGTTCAAGGGCGTGGTTCAGCAATAATCGCGC 9873 28 100.0 33 ............................ CTACCAGCTTTTTAATGTCGTTCTTGACAATAC 9934 28 100.0 33 ............................ CCAGTCAGAGTAATGAGGTGGCCAAATAAAATA 9995 28 100.0 33 ............................ ATTGACTTGTCACAGATTGCCAGCCGCTATCAG 10056 28 100.0 33 ............................ TACCAGTGGGAACCCGATTGCCCGCAACTACGA 10117 28 100.0 33 ............................ TACAAGGGGTGTATCTCTAGGTGCGCTTGTTGA 10178 28 100.0 33 ............................ CACGCTGAAACAGATTTCGGTTGATGTTGCTCG 10239 28 100.0 33 ............................ CAGAATTAAAATTAATGGCGCCAATCTTATCAA 10300 28 100.0 33 ............................ CAACGCTAGACGACGCAACTCAAGAACAAGTCG 10361 28 100.0 34 ............................ CAAAAGTCTGAACGCGTTTATCATCTCGATTTCA 10423 28 100.0 33 ............................ CCATAGCGGCGTCAACATTAGTACGCTCAATCT 10484 28 100.0 33 ............................ GGGGATGACTGTATGAACGAACGCAATGAAAAA 10545 28 100.0 33 ............................ TTTCATGGTGCCCTCCTTATTGCTGTGGAGCAA 10606 28 100.0 33 ............................ CTAATGTTACTGATATTTTTATCAAGCCATTTG 10667 28 100.0 33 ............................ CACTTTGTATTTTCCAGCCATTTCCCACTTCAC 10728 28 100.0 33 ............................ CGCTGTCTTGCCTCACGCACAGTTTCAGCAGCC 10789 28 100.0 33 ............................ TGGAGATCAAGATGAGTATTATGCATACGTTGG 10850 28 100.0 33 ............................ CGACTGATACTTCTCTGAACCGGTTCATTTGTG 10911 28 100.0 33 ............................ TGCCATTCCACAGTCCGCTGAAGAATGAAGCGA 10972 28 100.0 33 ............................ AGCACAGACGCCGAAGGGAAGCATCGTTGCTTT 11033 28 100.0 33 ............................ CAAGCCATGAAAAAAGCCGCTGGCCCGCATGCC 11094 28 100.0 33 ............................ CACACGATGACGAGCTTGGCAGTCACTCGGTTA 11155 28 100.0 34 ............................ CCTCTGCCCAGTCACCAATCGTGTATCCAAAAAA 11217 28 100.0 33 ............................ TGATCTTCGCAACCGTGAAGGGATTTCAATCAG 11278 28 100.0 33 ............................ CATTAGACGCCGGAACAGGCTGTGAATTTGTTG 11339 28 100.0 33 ............................ CAAACAAGCGGTGACAACTAGCTTGCGTGTGGC 11400 28 100.0 33 ............................ CGCGTTGGGATTGATCCATGGGAGCTTATTCGG 11461 28 100.0 33 ............................ CGGTCCAAGTAGTGCCATCAATGCCGGTCCGTG 11522 28 100.0 33 ............................ CAAGGCGGCCAACTCCTTTTACGCCTACTGATG 11583 28 100.0 33 ............................ CAACTGTGCCCTCAACAGAGAACTCAACGTTTG 11644 28 100.0 33 ............................ CAAGGCGGCCAACTCCTTTTACGCCTACTGATG 11705 28 100.0 33 ............................ CAACTGTGCCCTCAACAGAGAACTCAACGTTTG 11766 28 100.0 33 ............................ TAAAATCAGAGATCACCCGACACACACAGCACT 11827 28 100.0 33 ............................ TATATACTGACTGATTGCCCACTGGTACATTTG 11888 28 100.0 33 ............................ CAAGAAGATTACCGGTAATGACTACGTCGCCAG 11949 28 100.0 33 ............................ CTAAATCCATTCAGCAAAAACACGTCACCAGCG 12010 28 100.0 33 ............................ CGCCAACTCACGGCCACTAGATCGTTGGACGGT 12071 28 100.0 33 ............................ CGGTGTCGCAATGCCTAGCTGGGTTCAGGGCAA 12132 28 100.0 33 ............................ TAATGTGCCAGTGGGAGCAATGGTGTTGTCGAT 12193 28 100.0 33 ............................ TGATCACCCCAGATCAATACAAGCAAATTACAG 12254 28 100.0 33 ............................ TGGTTGTTGACCAGCCTGTGCTTGGCTTAGTGA 12315 28 100.0 33 ............................ TAAGATTGTGACGTCCGGCAGTATTTATGATCT 12376 28 100.0 33 ............................ TGACAACAGTCAGGTGACGCATACCGAACTCAG 12437 28 100.0 33 ............................ CGGCAACGGCACCTCTAACATCTGTATTACCAA 12498 28 100.0 33 ............................ TACCAGCATCCTCAGCAGTGAATGTGTCCTCAC 12559 28 100.0 33 ............................ CAAAAACCCCACAATGTCATCGTTTAACCAGTC 12620 28 100.0 33 ............................ CGGGTAGTTGAACTGATTGACCGCCAGCAGTGA 12681 28 100.0 33 ............................ CATCATCGGCAAGCTTGCTGACAAGAACGAAGA 12742 28 100.0 33 ............................ TGCCTTTTTACGGTTCAATGCGGCCATAGAGCG 12803 28 100.0 33 ............................ CATCTCTTCGAACCCCAAATACAGCGTCATTAC 12864 28 100.0 33 ............................ TGACAAATAGATATTTGCAACGCTTGGACAAAC 12925 28 100.0 33 ............................ CCATCGCTTGCGCCAATCGTGATTTAATCGTCG 12986 28 100.0 33 ............................ TTTATTAGAACTAGCTGAAGATGGAACAAATGA 13047 28 100.0 33 ............................ TCACCAATGGTACGTTCTGCTTCATTCAATCCA 13108 28 100.0 33 ............................ CAATCAATTCGCCAACCGTTAATTCGCCATTCA 13169 28 100.0 33 ............................ CGAGCTGCAGGACTACTCACGATGGACGAATTA 13230 28 100.0 33 ............................ TATGATTGTCGAATAGGAACCGTTACCGTCAAT 13291 28 100.0 33 ............................ CAGTTCCTACCTGACTGTCCCACCAAGGTGCCG 13352 28 100.0 33 ............................ CGCAAGCGCCGGGATTTGAACCCGATAAGGCCA 13413 28 100.0 33 ............................ CCATGCACGGGCAACGGCTACTTGGTTGTCAGC 13474 28 100.0 33 ............................ CGAACGTAACAACGTGGCCACCATGTTTTCGCG 13535 28 100.0 33 ............................ TCGAAAGAGGTAGAAAACATGAAAACAGCAAGC 13596 28 100.0 33 ............................ CAGGAGGAACCATCATGGCAGAAGAAACACAAA 13657 28 100.0 33 ............................ TACATCAACAAAGAGTATGACGTCAGCGGCACC 13718 28 100.0 33 ............................ TGACATCATCACACACAAGGAGCCATACCAAGC 13779 28 100.0 33 ............................ CAGATAACGTTACATATCACTGGAATAACACAA 13840 28 100.0 33 ............................ TTATTGTCAAAACCACCGTAGTTTTGGCCTGTT 13901 28 100.0 33 ............................ TGAAATATCGTAAGAAGCCGGTTGAAATTGAAG 13962 28 100.0 33 ............................ ATCCTTACCTTTAGCAATGCTAATCAGCATAAG 14023 28 100.0 33 ............................ CAACTGGCGTGCTCGCTCGTGCATGGTGGGAAG 14084 28 100.0 33 ............................ CGACTTGGACGCGCTCAACTATGATCTTTTCCT 14145 28 100.0 33 ............................ CGTGCGGGTCTCAGGTAGATGTCGAATCAATCA 14206 28 100.0 33 ............................ CCTTATCGCAAGTAATAGGTACCATATTAAGTT 14267 28 100.0 33 ............................ CAGCTTGCGCACACAAATGACAAATGCCGAAGC 14328 28 100.0 33 ............................ CACCGTTTTTGCAAATGGTCAATGACGGTTTCA 14389 28 100.0 33 ............................ CTTATTATATTTTGGAATGGCGTGCCGAGGTTT 14450 28 100.0 33 ............................ TACATATGCAATTTTTCCACTAGTAATAGAAAC 14511 28 100.0 34 ............................ CGAAACTGGTTGGTTGACGTTCTCCTGGTTTCCA 14573 28 100.0 33 ............................ TGAGCTTGTTAAGGACGACCCAGTTACCATCAA 14634 28 100.0 33 ............................ CAATCTGGTTAACTACACCATCTTGATTGATAT 14695 28 100.0 33 ............................ CTCAGGCAAGTTATCTGGCAAAAATCCAGATCG 14756 28 100.0 33 ............................ CGTCTTTGCCGTCTCTTCAGGGGCAGATTACGG 14817 28 100.0 33 ............................ CAAGGCCGCTTCGCATTCCTTGACTTATGCACT 14878 28 100.0 33 ............................ CTGCTATCCGATCGTGGTCGACCCACGTACAAA 14939 28 100.0 33 ............................ CAACAACCGAATGGAAACCCTGAACAACAACCG 15000 28 100.0 33 ............................ TGAAATTTCAACGCTGTCCAGAACTTTGTCATT 15061 28 100.0 33 ............................ CTCGCAAGCGACAACCGGCAAGAATCTTACATC 15122 28 100.0 33 ............................ CGCAAAATAGGCCGCAAATATTTAGAATAAAGG 15183 28 100.0 33 ............................ TTGTCGCCATTCTTTGACGGAGTTTGACCCCGA 15244 28 96.4 33 .......G.................... TGTTACGTTCGATCCTGATGGTAACGTTGGTGA 15305 28 100.0 33 ............................ TTGCAAGTGAAACATAATACTGACAGCATAGGA 15366 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 92 28 100.0 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : GAACGAGATGCAATTATTGCCATTGGGGCGGTAAAAGGACCGTCAGTTAACGAAACCGAAAAATTCACTACCTTGGTGAATCCACGAAGGCCGCTTCCATCAACGGTTGCCAAGTTGACGGGATTGTCGGCGGAGGAGTTGGTTGCCAATGGGATCAGTCTGAGCGAGGCAGTGCAGGCCTTACGGGATTTTACCGGCTCGCTCCCTTTAGTCGGATATAATCTGCGTTTCGACATGGGATTTCTTTCGGCAGCGGGTCGTGAAACTGGGTTAACGTCTTTTGGGAATCATACTTTTGATTTACTACCGCTTGTTAAGAAATCCAGTCGCTTTCTGGATAATTACAAGCTTAGTACAGTGCTGGCACATTATCAGATCGATAACGAGCAACCGCATCACGCGTTGTCTGATGCGACGGCAACAATGGCACTGGCGGACAAACTCATAAAAAAAGGAATCTTAACGATTGGCAAACGTTGATGGGATAGGGATTTTTTAGT # Right flank : CAGTAGCCTCTTGGCTAAAATAGGCTTTTATTTGTTTTCCCGGTTCTGGTGCAAATTTTCCTCGCTGACTTGATTTTAGTATACTGGGTGCCAAGAAACGAGGGATTGCGCGCATGAATCACTTTAAGGGACGCCACTTTCAAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //