Array 1 1-226 **** Predicted by CRISPRDetect 2.4 *** >NZ_JALP01000393.1 Alkalihalobacillus alcalophilus ATCC 27647 = CGMCC 1.3604 contig_1986, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1 26 78.1 35 ------....A..................... AATTGACGATAAGCATATATTATTCGTGTCTCTTC 62 32 100.0 34 ................................ ATTCATGACACTTTTAACATCTTCTTTAGTAGTT 128 32 100.0 35 ................................ TGGAGCTAGTTTCCCCCAGTTTTGAAAAGAGTTAT 195 32 81.2 0 ..........A........T...AC.A....G | ========== ====== ====== ====== ================================ =================================== ================== 4 32 89.8 35 GTCGCACCTCGTGTAGGTGCGTGGATTGAAAT # Left flank : | # Right flank : GGTAAATCAAAGTTGGTTAAATCCTTTTTGGCAGGCCACTTGTTCCTATCACAAAAGTGGTGCGGAGGTTACATAATGGCTTTATTAGAAATGGGATTAAATCAGTTATCGGTATTGACTTTAATAATTGAAACAGCAAAGGAAGATTTCAACAATAATCATAATGTTTCTTTCAAAAAGAACGGCTAAGGATTCTCAAATTGAAGCTGTTTCTGACGATTTATTATTAGAACGGGTTCTTATTCATCACCTTGATGACTTAAATGCCTATTTTAGTGAGAGTTATCGAATTTTGCAAAGTAACGGACATTATTTAATACAAGAGCGCACCCTAGAGAATTGTCTCTTCCCAATCCGTTGACTTAGATTAATATACAAATGATGATATATAGAAAAAGCCACAAATGAAACAATGTGGCTTTTTTGTATATTTTACTCTACTCAAGATTAGCGTGTTTCCCATACATTTTGTTAGAATCTAAGCTTTTTTTCTTCATAAA # Questionable array : NO Score: 8.35 # Score Detail : 1:0, 2:3, 3:3, 4:0.49, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCGTGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 131-362 **** Predicted by CRISPRDetect 2.4 *** >NZ_JALP01000401.1 Alkalihalobacillus alcalophilus ATCC 27647 = CGMCC 1.3604 contig_3973, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 131 32 100.0 35 ................................ AATATTATCCGGAAGGGTGTGCATCTCTTGATTTC 198 32 100.0 35 ................................ AAAAAGGCGATACGTTTACGTCTATTGCGGCGCAA 265 32 100.0 34 ................................ AATGATTTAACGAAAGCGAACGAATCTATGTATT 331 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 100.0 35 GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Left flank : CACTCTATATGGGTGCGTGGATTGAAATCAAATGAAATAATTAAAATAGATGGACTACGAGTTGTCGCACTCTATATGGGTGCGTGGATTNNNNNNNNNNGTGTATTCTCCTCCTTTTTTTGTTTTAACTG # Right flank : TCATTACATCAACCTCCAATTAACAATAATTATAGTCGCACTCTATAATGAGGAAACTCATCCTGAATATGACGATATGTTGTTATGGGCTGAGAAAGATACAGGTGGTCGGAAGTTTGATCCAGATTATTTTTATAAAAATGAAATAAATCGGAAGCTGAAAAGAATCAAGTGTTAGTGACATACAATGAAAGTAATTCCCTATAATGGAAGTACCTGCCCTGATTACTGTGGAGTTTATTATTTAGAGTTTAACTTAATCGTTCCCCCCAAGCACATGTCGAATCCTGCATGTGCTTTTTTGTCTTGTTTTGAATCTTGTTCGAGAGAAAATGTAACGAGAGTGTGGATGGGATCTGACTATGGGCGATAAAATTAGCGAAAGTAACTAAAAAGATTTCGTTTTTATTGTGAATAAACAACAATTACTCATGCTTTTCTGAATGCTAAGATTAAATTAACTTAAAAACACGAAATATTCAGAAAAGGGGTTTGTCGAA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 28788-28950 **** Predicted by CRISPRDetect 2.4 *** >NZ_JALP01000255.1 Alkalihalobacillus alcalophilus ATCC 27647 = CGMCC 1.3604 contig_676, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 28788 32 100.0 35 ................................ CCATATTTAAGGTCAATAACGTCAATCGTTTCGTC 28855 32 87.5 36 ............................NNNN NNNNNNCACCGCGTCAGCCTTGCCTATCGCATCATA 28923 28 87.5 0 ............................---- | ========== ====== ====== ====== ================================ ==================================== ================== 3 32 91.7 36 GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Left flank : AGAAGTGAAATGGTCAAAACCAAGTTATGCACAAGGTGGACTTGTTTGTTACTTAGCACCTGCCAAAAACCATGTAAACCTTGGCCTTTACCAAGGTTCAAAACTTAATGACAAGGAAGGGGTACTTCAAGGAACGGGAAAAGATATGCGTCATATCCAGGTGAAAAAAGTAGAGGATATAAGAGCGGATTTGTATAATTCTCTCATTCAAGAAGCGATAGAACTGAATAAATAATGACAAGTTAATGGGCTTCAGGTACAGGGTCACTAATATTTTTATAATTATAGTCTGTTCTCTGTGTAACTTAAAGAGTCTTTTATTTTTGACAGCGGTGCGAACCTATAGCAAACATAAAATACCTAGTAGATTCGCACTGAAAAAAGACAGTATTATGTGAAAATATGTGCGTAATCGAGTGGGGAATTGCTGTATTGTAGTAATAAGAGAAAGTTTTTTATATATTTGAGTGGTTTTGAGCGTTATTTAGTCAAAAATCGTA # Right flank : | # Questionable array : NO Score: 7.95 # Score Detail : 1:0, 2:3, 3:3, 4:0.59, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1657-1293 **** Predicted by CRISPRDetect 2.4 *** >NZ_JALP01000356.1 Alkalihalobacillus alcalophilus ATCC 27647 = CGMCC 1.3604 contig_1315, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1656 28 87.5 38 ----............................ AGTGGGGAACTGAACTAGTGCGTAAATTTGGAGNNNNN 1590 32 84.4 36 NNNNN........................... ATTCCGAAAGATGATCCGAAAAGAAACGATAAAGGC 1522 31 96.9 35 ....-........................... ATATGCTGCATACTCTAACCTTTTTAATGCCTCAA 1456 32 100.0 35 ................................ AAGTTGATTACCAAAAATTACGATAAGTCTATAGA 1389 32 100.0 33 ................................ GCCCTTTATAGGATCGATATGTTCTTGGACTGC 1324 32 90.6 0 ........T........C.T............ | ========== ====== ====== ====== ================================ ====================================== ================== 6 32 93.2 36 GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Left flank : | # Right flank : GTTTCATCATTATCAGGATCTTGTGATTGACCTGCCTCACTCTACGAAAGCCTTTAATATCGATTAAAGGCTTTTCGGAATTGTTAACGGAGCCTGTATTAACAAAGGCGTAGAAGAAAGAATCTTTAGCTATTATTAAAAAGAAAAATGACCATCTCACTGTGATGGTCGATTCATTCTGACTTTTTAACGACTTAATTAGTTCCTCAATGTTTAGGCACAAAAAAGACACCCTAATTTAGAGTGTCTCGTCAAATTTTTGCATTTTAAAGGTATCACTGTTCTTTATTTGAATGCATATCTTCATTAAATAATAACTTTACATAATCTCTTCTTGAATATAAAATTCGATAAATGGATACATGAACATCATCATATTTATAAAAAACAATGTAGTTTCCACTGATTAGATATCGATAATCTGTTTCAATATGAATCTTTGATGATAACTTTACACCTAACATTGGATAATTTTTAGTTTTTTGTAACTCTCCATGATA # Questionable array : NO Score: 8.92 # Score Detail : 1:0, 2:3, 3:3, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 60-558 **** Predicted by CRISPRDetect 2.4 *** >NZ_JALP01000360.1 Alkalihalobacillus alcalophilus ATCC 27647 = CGMCC 1.3604 contig_1337, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 60 32 100.0 33 ................................ GGTTGCTGTTAATCTACCACATTATGATAATGA 125 32 100.0 34 ................................ TGAAATTCTTTTCCACCTTTTTCAACCATTTGCC 191 32 84.4 36 ...........................NNNNN NNNNNTAAATCTTGTGCAAACATTTCAATAGCTGAT 259 32 100.0 34 ................................ AGGTAATTCATTGATATATATTCAACCCGATGTA 325 32 78.1 35 .........................NNNNNNN NNNGATAACTCCCTAAACGTCAAACCACTCGTAAA 392 32 100.0 34 ................................ TGTATATCCTTCTTTCTACCTTTTGAGCGTCCTT 458 32 84.4 37 ...........................NNNNN NNNNNCATTACATATCAAGGGAGGTCTTTTGATTGTC 527 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 93.4 35 GTCGCACCTCATGTAGGTGCGTGGATTGAAAT # Left flank : CCTCATGTAGGTGCGTGGATTGAAATAATTCGGTTTTGTCTATCCGCGCCCCCACTTGCG # Right flank : CAATCCCACGCGCCCCAATAACGAAATTTAGTAGTCGCACCTCATGTAGGTGCGT # Questionable array : NO Score: 8.93 # Score Detail : 1:0, 2:3, 3:3, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCATGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 357-130 **** Predicted by CRISPRDetect 2.4 *** >NZ_JALP01000318.1 Alkalihalobacillus alcalophilus ATCC 27647 = CGMCC 1.3604 contig_1036, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 356 32 100.0 32 ................................ AGAGGTTAAAGGATTATTAAGACAAATCNNNN 292 32 81.2 34 NNNNNN.......................... TGCTCCTCCCATTTTTTTATAATTGGCTCATAAT 226 32 100.0 33 ................................ TAGATGGAAGATTTTATTATGCAAGTAGAAATT 161 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 4 32 95.3 33 GTCGCACCTCATGTAGGTGCGTGGATTGAAAT # Left flank : AACGTTTGAGAAAAGTCGCAAAAACCTGTCAAAACTATGGTCAACGAGTTCAAAATTCGGTATTTGAATGTATCATTGATTCTACACAATATGTATCATTAAAGCATGAACTATCATCTATTATAAATCCTAAAGAAGATAGTCTCCGATTTTATAAATTAGGAGATAACCACAAAAATAAAGTAGAGCATATTGGAGTGAAGGAGTCAATTGACATCGAATCACCTTTGATTTTTTGACGAGTTTTAATGAGAGAATAGATGAGTGCGAATGTGAGGCGATCATCATTTCCTAGGGGGATTCGCACCTAAAAAATAAAGTAGATATTGTTGGAATTTGTCGTATTTTTAGGAATGAGTTAATTCTGAGCAGTTTTTTTGTGGAAATGTCTTCTAATTAATGGGTATTTTCTTTAATTTGAGCCATTTTNNNNNNNNNNCCTCATGTAGGTGCGTGGATTGAAATAAAATGGGAGTATATCGGCAGAGGATTTTGTCGAT # Right flank : TTGGGTTATAGCTGCAATAGCCGCACTAGTANNNNNNNNNNACCTCATGTAGGTGCGTGGATTGAAATACCGCTTACCCTTTCAAAATTAGCGAATTAGAGGGTCGCACCTCATGTAGGTGCGTGGATTG # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCATGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.85%AT] # Reference repeat match prediction: R [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //