Array 1 290023-291638 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCJ01000003.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_2700 NODE_3_length_470407_cov_4.33415, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 290023 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 290085 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 290146 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 290207 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 290268 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 290329 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 290390 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 290451 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 290512 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 290573 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 290634 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 290695 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 290756 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 290817 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 290878 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 290939 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 291000 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 291061 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 291123 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 291184 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 291245 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 291306 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 291367 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 291428 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 291489 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 291550 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 291611 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 307921-309879 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCJ01000003.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_2700 NODE_3_length_470407_cov_4.33415, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 307921 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 307982 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 308043 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 308104 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 308166 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 308227 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 308288 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 308349 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 308410 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 308471 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 308532 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 308593 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 308654 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 308715 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 308776 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 308837 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 308898 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 308959 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 309020 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 309081 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 309139 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 309200 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 309261 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 309322 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 309383 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 309444 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 309505 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 309566 29 100.0 11 ............................. CGGCCAGCCAT Deletion [309606] 309606 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 309667 29 100.0 32 ............................. GGCGATGCGGGCGCATTGTACGCGATGCAGAC 309728 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 309789 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 309850 29 93.1 0 A...........T................ | A [309876] ========== ====== ====== ====== ============================= ================================= ================== 33 29 97.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //