Array 1 4964-3014 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUBJ01000016.1 Apilactobacillus micheneri strain HV_60 scaffold_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4963 36 100.0 30 .................................... CCGTAAACTATTTTTACATGTAATATAGGA 4897 36 100.0 30 .................................... CACGTTTCTTAGGCTTAAAAATTAAGTTAA 4831 36 100.0 30 .................................... CAATTATTTCATTTTTTAAAAAAGTATTTC 4765 36 100.0 30 .................................... TCAGAAGATTCAAGCAATGATTCAATCTGG 4699 36 100.0 30 .................................... AAGTTAGTCTATGACCGTCCTTACTACAAC 4633 36 100.0 30 .................................... TAATGATAGTAACTTAAGCTACGATAATAG 4567 36 100.0 30 .................................... TCATAAACATAATAATAAACAAGTTAATAC 4501 36 100.0 30 .................................... TCTAGGGCTACAGTGCAGTCACTAGAGAGT 4435 36 100.0 30 .................................... CAATGTTGATATTTTGTTGAGTGAGAATCC 4369 36 100.0 30 .................................... GAGATTTTAACCATGCCAACAGTACCATAT 4303 36 100.0 30 .................................... ATCAGCTTCACCAGTAATAGCTAAATTAGT 4237 36 100.0 30 .................................... TAATTTAGGTGATACTGTTCAATTATGTAT 4171 36 100.0 30 .................................... TGGTTTATATACAGACGTAGAAGAAGCAAT 4105 36 100.0 30 .................................... TGTAGGTAATGCTTCTAAGTCTTCCCATTT 4039 36 100.0 30 .................................... GATTGGAAGATTCAAATTGGCTGATGATTT 3973 36 100.0 30 .................................... CGCTGGAATGTTTAATAAATCTGTTTTTGG 3907 36 100.0 30 .................................... CATTAGTGCCACTTCATCAAAGTAAAACCC 3841 36 100.0 30 .................................... ATGGCTCTTGCCGTTTCAAGTTCTGCTTTT 3775 36 100.0 30 .................................... TGTAGTATCTTCTGGAACTTTAGTACAATC 3709 36 100.0 30 .................................... GCCACGGCGAGTTAATTCTTCATATCCAGC 3643 36 100.0 30 .................................... ATTACTTTGAACAAGTTCAAGCTGATCGGA 3577 36 100.0 30 .................................... CATTCTAAATAATCTTTTAAGTCCATAATC 3511 36 100.0 30 .................................... GAGCTAGATAATGACTTTTAATGTTTATGA 3445 36 100.0 30 .................................... GCTGAATCATCATCAGAAACACTTGGTTCT 3379 36 100.0 30 .................................... CACGAACACTTGCTACACCATCTTTAGTTA 3313 36 100.0 30 .................................... AATTATCTCCTTCCATTTCTAACCATTTGT 3247 36 100.0 30 .................................... GGTACAGGTAAAGACGTAGCAGATGAATTA 3181 36 100.0 30 .................................... CTACAAACCATTTCCTGATGATTCATTGGC 3115 36 97.2 30 ....................T............... TAGCACATATAACTATATGAAAGGACTAAA 3049 36 94.4 0 ........................A..........T | ========== ====== ====== ====== ==================================== ============================== ================== 30 36 99.7 30 GTTTTAGAAGTATGTTAAATCAATGATGTTTAAATC # Left flank : GATATTAATAAATATTATAAAAATAAATTGATTAATAGTATTGATAATAATTTTAGTGAAAAAGAAATTAACTCCATTCATAATGCTAATCGAGAATTGGTTAATAAAATTCAAAAGCATTTATTTATGTACGATCTACCAATTAAAGTTGATTATGATAATGATTTAAAAAGAATTCTTAATTATTCAAAAATCCATTTTGATAATTATGCTATCAATAATCCTTATGATAAAATAAGTATGTTAATAAAATTATGTCTAGAATTCAAAGATTCAGCAGTTTTGGCTGTTACTAATGTATCTCATTATTTAACGCCAGAACAAATTGATGGGATTGCAGATTTATGTAAAAGTTCTTCAATTCCATTGATAATGATTGAATTTACAAATTTAAAATCTAAGGACGATTATAAGCATTGTAATTTTTCATATATAGACCAAGATTTCGTTGACTGGTATTAAGGTCATAAATAATATTAAACAATTATGAGAAATTAACG # Right flank : ATTTTATTACTAAAAGGAGCGTTAACATGACCTTAATTATTTTTCCCATATTTATTTTGTTTTTAATCATATCTTTCTTTAGAACAAAGTTTAGAAAAATATCTATTGCAATATGTATACTAACTGGGTTGCTTTTATTTATGCTGGTTTTATCAGGAATTTCAATGGCCAGATAATTGATTTTCAAATCTATGAATAAGAAGGAAACTAATACGATTAATTATTTCTATAATTTTATTATTCTTTTTTGGCTATGCACTAATAACATTCCTTACTTAACTTTTATAAACTAATCTTGGAGGATACATATGGATTTCTTAAAACTACTATCATTTTTCGGTAATGGTATTAGTTTGATTTTTAGAATGTGGAAATTAATCTTCTTCATTCTATGTTGTATTGCTATGTTTAATTTATTAGGTGGCGATGATGTGGATTGGGAAACTGTTGGTCAATACACATTATTGATCGTTATCTTTATTGCTTTTTGTATTGTCATT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGTATGTTAAATCAATGATGTTTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //