Array 1 1542-110 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCWA010000200.1 Escherichia coli strain 2835-47 2835-47_S15_L001_NODE_205_1673_cov_15.214748, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1541 29 100.0 32 ............................. AGGCGCGGAACTCCTGGACGAACGCGCTCTGG 1480 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 1419 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 1358 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 1297 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 1236 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 1175 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 1114 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 1053 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 992 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 931 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 870 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 809 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 748 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 687 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 626 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 565 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 504 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 443 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 382 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 321 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 260 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 199 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 138 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25478-26362 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCWA010000006.1 Escherichia coli strain 2835-47 2835-47_S15_L001_NODE_6_108809_cov_23.178530, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 25478 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 25539 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 25600 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 25661 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 25722 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 25783 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 25844 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 25905 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 25966 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 26027 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 26088 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 26151 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 26212 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 26273 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 26334 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //