Array 1 1448183-1449352 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI518955.1 Pseudomonas aeruginosa BL01 adgeu-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1448183 28 100.0 32 ............................ TGCCGGTAGCAGGGCATCAACAGACCAAACAC 1448243 28 100.0 32 ............................ GTCGACGTCGATGAACGCCGCGCACGGATGGA 1448303 28 100.0 32 ............................ TTGCTAAGCATCCACTGTGCCGCTCCTGTAGC 1448363 28 100.0 33 ............................ ACGTATCAGGCATCGTACTCGGCAAGGTGTTCT 1448424 28 100.0 32 ............................ TGCGGAAGGGGCCGGGCTGGCGCTGGCACCAG 1448484 28 100.0 32 ............................ TTGATGGCGTTGACCAGCTCCTGCACCTGGTC 1448544 28 100.0 32 ............................ ACGAAGTGACCGTGGTCCGCCGACAGGGAGGC 1448604 28 100.0 32 ............................ ACATGGGAATGCTCTCCTGGCACGAAGAAACG 1448664 28 100.0 32 ............................ GCCCGCTGGGGAAGCCGCAGTTATCCGGAGTA 1448724 28 100.0 32 ............................ AACCGCAGATGGCGCTGGACCGGGGCGTGCCG 1448784 28 100.0 32 ............................ AGGTTGACCAGCATGGCCGGCATCGACAGCGT 1448844 28 100.0 32 ............................ TCGGACAAAGACAGCCTCCGGTCATAGGGTAG 1448904 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 1448965 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 1449025 28 96.4 32 .............T.............. ATACTGACTCAGCCAGGGAAAAGTCACTTGGA 1449085 28 96.4 32 .............T.............. AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT 1449145 28 96.4 32 .............T.............. TCGGCGAGGCGATCGATCATGCGAATCAGCAA 1449205 28 96.4 32 .............T.............. ATCGACCACGACAGTGCTTCCCTGGTCTATTC 1449265 28 96.4 32 .............T.............. ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 1449325 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.9 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGTTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGAAAGGCGAAACAAGAGGCCAAGGCAAGCACGACGCCCGCTCAAGCGCTAAGCAACAGCTTCCCCCCTTAGTGCCGTGCAGGTAGCGACGGGAGCTGGGGGCCAGTGCACGCATTCACGGCCCGCCAGGCAGTCCCCGTGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4253202-4251831 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI518955.1 Pseudomonas aeruginosa BL01 adgeu-supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4253201 29 100.0 32 ............................. GCGGAGATCAGTATCAGCACAGACTGGACGGA 4253140 29 100.0 32 ............................. AAGGGGCGGCTCTTCAATTGGCAGGTCGAGAT 4253079 29 100.0 32 ............................. CCGGTGCTCGCGCCGGCGCTTGCGGGCCTGCC 4253018 29 100.0 32 ............................. TGGAATTGAGCGCCGGCAGCAGAACGGAACCG 4252957 29 100.0 32 ............................. AACTGGGACGTTCGCAGCCCCATGATTTCCGC 4252896 29 100.0 32 ............................. TCGTTCGGCTCGTTGAATGCCACGGCAATGGC 4252835 29 100.0 32 ............................. TTGTTCCTATGAAGAAGCGCGAGGACCGATAT 4252774 29 100.0 32 ............................. GTTAATCAGGACCGGCCAGCATCGCATTTCCC 4252713 29 100.0 32 ............................. CCGGCACATGATGGAGAAAACCGATGTACCCA 4252652 29 100.0 32 ............................. GTAGGCGACTTCCTCAATACCGGCGGCGGAGC 4252591 29 100.0 32 ............................. CAGCGGGCCACCTGGCTGCAGTTGCTGACCAG 4252530 29 100.0 32 ............................. ACCTTTCCGACGACGCACTGCGCGTTGATATG 4252469 29 100.0 32 ............................. CGAATAAGCAAGCTCGATGCCGCCTAAGAAGC 4252408 29 100.0 32 ............................. GACTTGCGCAGGTTCGAAAGCGGTGTGCTGGA 4252347 29 100.0 32 ............................. AGCACCGAGGTAGAGGTGGCCATCTGTCGGCC 4252286 29 96.6 32 ...................A......... CACGACGTAGAGACCATGGTCCAGAACCTGAT 4252225 29 100.0 32 ............................. CTGCCGATGCAGCAGGTCGATTTCCTTGTAGT 4252164 29 100.0 32 ............................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 4252103 29 100.0 32 ............................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 4252042 29 100.0 32 ............................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 4251981 29 100.0 32 ............................. ATGTGCTTCCAGCTTTCGTCGTCCAGCTTCCG 4251920 29 100.0 32 ............................. CAGCGGGCCACCTGGCTGCAGTTGCTGACCAG 4251859 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.9 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTGGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4263459-4262758 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI518955.1 Pseudomonas aeruginosa BL01 adgeu-supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4263458 29 100.0 32 ............................. GGCAAAACTTGGGTTATCGACCCTGACTTCAA 4263397 29 100.0 32 ............................. TGGCACGAATCGTCGTAGCAGGCTTGGACGAA 4263336 29 100.0 32 ............................. GAGGAGTTGGAGGCCATGATCGGCGCCAAGTC 4263275 29 100.0 32 ............................. TCGATGCGAGACTCCAGCCCGGTACGAGACAT 4263214 29 100.0 32 ............................. GCGATCATCGAATGGCCGCACCGCATGGACCT 4263153 29 100.0 32 ............................. CTCAACGAGAAGAACATCCCGCGCAACATGAT 4263092 29 100.0 32 ............................. GCCATCAAGGAAGAGCCCCAGCTGCGCGTCGA 4263031 29 100.0 32 ............................. CCTGCATCAGATGCGGCCTCCTTCACGCGGGC 4262970 29 100.0 32 ............................. CTGCTCCAGGGCAGCAATTCCAACGGACTGGG G [4262959] 4262908 29 96.6 32 ..A.......................... ATGGAAGACCCAACCCGCGGCCAGGGGTGGGG 4262847 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCA 4262786 28 79.3 0 A..........A..C.....-..A....T | C [4262777] ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.1 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGAGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATCGTGAACAGGCGGCAAGTGAAGGTTGTTAGAGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCATG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //