Array 1 6551-6718 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHRW010000016.1 Streptococcus pyogenes strain K7393, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6551 36 94.4 30 ....AC.............................. GAGGCTATCCCAAATGCTCTTTCAGGAGTT 6617 36 100.0 30 .................................... TTCAGCACACTGAGACTTGTTGAGTTCCAT 6683 36 88.9 0 .............................T.C.TT. | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 94.4 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : GTGTGACTTACACCGCAACTAAAAAACCAATTTAGGAGGTAAAGCTCCTTTAGATAAGACAAAACCGCTCAGATAATTTCTGGGCGTTTTTTGTGTTTATCCGCACACGATATCACCAGAAACCTTGATTTAAGAGCGTTTATTCGCACATAGATTTGCACACGCCAACGTCCAATATAATGGCAATTTTAAAAATTGTCTGTTGTAAGCGACTTTTTACGGATATATAAGTGGAGGTTCTTATGCTAACATACGACGAGTTTAAGCAAGCGATTGACAATGGATATATCGCAGGCGATACAGTAGCGATCGTGCGCAAAAACGGACAGATTTTTGATTATGTATTGTCTGGTGAGCCTGTGAGACCGTGGGAGATTTTGACTGAAGAAATAGTAGAAGCAGTGCTGAGGGAATTAGACAAATAAAAAAAAGACCTTGTCCAAAAGGTCGTGGTATAGTCGGGAACAGGCGATTCAATCTATTGATATAAAGCCTTTTTA # Right flank : CAACATTGCCGATGATAACTTGAGAAAGAGGGTTAATACCAGCAGTCGGATACCTTTCTATTCTTTCTGTTAAAGCGTTTTCATGTTATAATAGGTAAAAGAAGAGTAGTGTGATGGAACAAACATTTTTATGATTAAGCCAGATGGGGTTAAGCAAGGGGGGGTAGTTGGAGAGGTTTTGCGGTGGATTGAACGCCTAAGATTTACGTTTGAGCGATTCGAGCTAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACGACGAGGCCTTGGTGATAAACCTTTTGATCCTAAACTTAAAGCTTACATAACAAGTGGTCCTGTTTTAATTGAGACACTTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCCTGGTGATGATGGAGGTGTTTTTAACATGGCGTATGGGTCTCATTCAAGAGACTCTGCTA # Questionable array : NO Score: 3.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 1 315-482 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHRW010000004.1 Streptococcus pyogenes strain K7393, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 315 36 94.4 30 ....AC.............................. GAGGCTATCCCAAATGCTCTTTCAGGAGTT 381 36 100.0 30 .................................... TTCAGCACACTGAGACTTGTTGAGTTCCAT 447 36 88.9 0 .............................T.C.TT. | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 94.4 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : TTTTAAAAATTGTCTGTTGTAAGCGACTTTTTACGGATATATAAGTGGAGGTTCTTATGCTAACATACGACGAGTTTAAGCAAGCGATTGACAATGGATATATCGCAGGCGATACAGTAGCGATCGTGCGCAAAAACGGACAGATTTTTGATTATGTATTGTCTGGTGAGCCTGTGAGACCGTGGGAGATTTTGACTGAAGAAATAGTAGAAGCAGTGCTGAGGGAATTAGACAAATAAAAAAAAGACCTTGTCCAAAAGGTCGTGGTATAGTCGGGAACAGGCGATTCAATCTATTGATATAAAGCCTTTTTAG # Right flank : CAACATTGCCGATGATAACTTGAGAAAGAGGGTTAATACCAGCAGTCGGATACCTTTCTATTCTTTCTGTTAAAGCGTTTTCATGTTATAATAGGTAAAAGAAGAGTAGTGTGATGGAACAAACATTTTTATGATTAAGCCAGATGGGGTTAAGCAAGGGGGGGTAGTTGGAGAGGTTTTGCGGTGGATTGAACGCCTAAGATTTACGTTTGAGCGATTCGAGCTAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACGACGAGGCCTTGGTGATAAACCTTTTGATCCTAAACTTAAAGCTTACATAACAAGTGGTCCTGTTTTAATTGAGACACTTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCCTGGTGATGATGGAGGTGTTTTTAACATGGCGTATGGGTCTCATTCAAGAGACTCTGCTA # Questionable array : NO Score: 3.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], //