Array 1 121716-122894 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXKM01000002.1 Actinomyces johnsonii strain CCUG 34287T contig_0000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 121716 36 100.0 35 .................................... TTTCCTTAGTTCCACGGCCGAGTCCCCGAGGGCGG 121787 36 100.0 39 .................................... TTGTGACAGGTGATCCTCATGTTTCCCTCTCTCTCAGGG 121862 36 100.0 35 .................................... CAGGCCGGGATCAGCGACTTCGCGTTGGAGTAGAT 121933 36 100.0 34 .................................... CCTTCGTCGTCACCAGCCACAGCACGCCAGCCTC 122003 36 100.0 35 .................................... TCGGCATTACCTTCAAGCCGCGTCTGGGGCGTATC 122074 36 100.0 34 .................................... ATGGTGGTGTTGTTGCGATGATGGTAATCCCAGA 122144 36 100.0 34 .................................... TCGGCAAATGCAACCTGTGAGACAATCACCGAGA 122214 36 97.2 34 ..................A................. TCAGAGCGTCTGCTGATGCGCCATTCTGGGACGT 122284 36 97.2 35 ..................A................. AACGCCGTCAAGTCGCGGCTGGGAACGAAGACATA 122355 36 94.4 35 ..................A...............A. GGTTGGTTCCGTGTGGTGATCTGGTAGGTGGCCGT 122426 36 100.0 34 .................................... CCTTCGTCGTCACCAGCCACAGCACGCCAGCCTC 122496 36 100.0 35 .................................... TCCTGCCGCTTCTTGTCCACAACGATAACTCGCCG 122567 36 100.0 40 .................................... GAGAGGGGTAGGAGCCCGGCGGCAGGCGCCAGGCCCACCC 122643 36 100.0 35 .................................... TGCTCAAAGGAGTGCCGCCAGGCCTGGATAACCGA 122714 36 100.0 36 .................................... GGGGTCGACCTCCTGGACCTGTGGCGCGGCACGCTG 122786 36 100.0 37 .................................... ACCGGCGACAACCAGATGGTCTCCGCCGACAGCGAGG 122859 36 97.2 0 ..................................A. | ========== ====== ====== ====== ==================================== ======================================== ================== 17 36 99.2 36 GTTGCAGTTCCTTCGGGAGCTGCACTTCATTGAGGC # Left flank : CTACAAGGGAGTGACGGCACGCTGATGCGTGACGATGTCAGACGCGTCCTTGTGGCCTACGATGTCCCGTCCGACCGGCGCCGAACGAGGGTGGCCAAGAAGTTGCTGCAATACGGTGACCGCATCCAGTACTCCGTGTTTGTCGTGGACGCGGCGCCGGCCAAGCTCCTGCGGATGCGGGGCGAGCTGGAAGGAATCATCAAGACAGATGAGGACTCCGTGCTCCTATGCGACGTCGGTCTGCTGTCCTCCGTCGATGAGCAACGGTTCTCCTACGTCGGTCTGACCAGAACCATCACATCGGAGGGGCCGCTCATCGCCTGACGCGAGCGCTCCGGTGCTCGGAGAACCTCGGGCAGCGCTCGCAACGATAAAACGTTGGAACGGCAGGGATTAGGTGGACTGAGCTGAAGACAGATACGGCTTAGTCCAAGCCCTCGCACGGAGCGCTCGCGAAGTGGCCTCAGATGGGCTTGGTGGCAGGCTATACTAAGCGGACC # Right flank : CAGGCGGGAATTGAGATGTCTATTTCGGCTTTCGATTCCCGCCTGCCGCCTCATGTGTCACCCGACAGGTGCGCCCGGCCCCCTCCAGGGCACTGGGCAAGGCGGTGAACAACCGGTCGGCGTCGACGGCGCTCGCGGCCGCGACGGCGGAGTCGACTCCGCCAGACAGGGAGGCCAAGACGTGCACGAGGATCTCCTTCAGGCAGACGGGTGACCGTCACTACGACTGTGGCAGGCAACCGCAGGGCGACCGCGACGGGGCAACCGGAAGAATCCAGGGGACCTTGCTGTGATCGGCACAGGACGGCGCTGAGGAAGGAACTGTCATGATCGACGAGTACGCCATTGACGCCCGCAGCTTCTCCCAGACCCGGCACGATCAGCGTCGAGATGATGAAGGACTACCACCGGATTCTTAAACGGGGGACCGCCGATGCGAGGCGGCCGTCCTTCGCCGGCGGGGACTGCAAACGCGTTCCCAACGTGGTGGGAGCACGTGA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTTCCTTCGGGAGCTGCACTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 264014-264349 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXKM01000002.1 Actinomyces johnsonii strain CCUG 34287T contig_0000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 264014 29 96.6 34 ............................G CCGCTCAGAGACGCTCACAGCGCCCCTGAGCGGC 264077 29 100.0 32 ............................. GTTCCGTACTCTCCGTACGAGAAATTTCTACA 264138 29 100.0 32 ............................. ACCCCACCGGTCGACGATGACGTCGTCAATGC 264199 29 100.0 32 ............................. AGCCCAACATTACGCGCACCAGCAGGTATTGT 264260 29 96.6 32 ............................T GATCGCGCAGATGACCGCCGCCGGGCTGTCGG 264321 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 6 29 98.9 33 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : GCAGCGTGCTGTAGCCGGTGGAGCGAACTACGCCGGAGAGGATGCAGGTGGATGGTAGTTCTGATCCTGTCGGCAGCCCCCGCCTCGTTGCGGGGATCCATGACCCGCTGGCTGCTTGAGGTCTCTCCCGGGATCTTCGTCGGGCATCTCTCAGCTCGAGTGCGAGAGCAGCTGTGGGAACTGGTCCGCACATACATCGGGGAGGGGCGGGCGCTGTTGATCTGGTCGGTGCGATCTGAGCAGCGGTTCGCGGTCGCCTCCCTGGGGCATGAGCGTGAACCTGTCGACATCGAGGGGTGTCTTGTTATGCGCAGCCCGTACCGGCAGATCGGGGGAACGCAGGCGATTCCCGGTGCCGTTAAGCCTCCGAAGGAGTCATGGTCGATCGCCGCAAGACGACGGCGCTACCGGAACTCGGCGGAGCGGGCTCTAGGTTGGCACTGAAGGTAAACGCGGTCTGGTAGCATGGCTCATCGTTGGGATTCCAGGGATCCGCAAGT # Right flank : CTCGAACGCCCCGGTGGGTAGTGCCCCGTAGTGTGGTGTAGCGCGGTGGCCGGGGCGATCTTGGTGCCGGAGTCGGACAGGACCCGGCAGATCGGCCAGGCCCCGAAGCGCTCCTTGTGCCGGTCGATGTACTGGCAGATCAACGCAACGGGCGCTCGCACTCCGCTGCCCCAGAGACGAGGCCGTTTCGTGGGGAGGTTGCTTGCACCTGACTAGGACACGCCAAGGCGGTTGCTTTACGAATATATCTGGGATAGGGCAAACTAATGCCGCTGTTCGACACCAGGGCAAGGTCGAGCAACGGCGCCTCCCGTCCCCGCGGGGCCGTCTTTCCAATATCCCTAGCCGTCACGCGCCGGACCCTCGACAAGGTGGTTCGAGTCGCTCTGCGCGCGGTCCCCTCCCTGGATGGGGCTTGTGTCGGCCGCCTGACTTGAGGAGTTAGGACGATGAGTGTCAGAAGGGCCGCAGAGGCCATCTTCTCCCCACCGGTTCAGAAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 91674-91349 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXKM01000011.1 Actinomyces johnsonii strain CCUG 34287T contig_0000011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 91673 38 100.0 34 ...................................... ATCTGATGCCAAACAGGGTTCACTCAGTTGAGCT 91601 38 100.0 35 ...................................... CAAAATCAAGGCTCCACCGTGTCGTGACAGTGAAA 91528 38 100.0 34 ...................................... AGCCGGCAGGCACCTCATAGTCAGCCGGAGCCCA 91456 38 97.4 32 .....................................A CGAAACGCAGAGGCCAACAATGATTGATTTGG 91386 38 86.8 0 .............TC.............T...A....C | ========== ====== ====== ====== ====================================== =================================== ================== 5 38 96.8 34 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTGAGACT # Left flank : GATCGGCACGGCGAAGCCAAGGCACGAGCACAGTCCTTTCTTCATCGCTGGAAAGACCAGTAAAACATCAAGGTCCAGGTCAACCGTGTGCAGCAAATAAGGTGGACCGTGACTCGGAGGCGGTCGGGTCCGTCGTCTCCGAGCAATGGACCATTGATGACCGACACCGACAGGCAGCTCGACGCCTTCCTGACCTACCTGCTGGACGGCCGGACGGCTCGGCGGGGGAAACACCCTTGACGCCGAGTCCAGGGCCCGGTTCCACCTCCACCACAGCAGGTTGTGCCTGCAGTCACAGGTCGAAACGTCGATCTTTTGGCTTGATCTCGTCGGAAGCTGGTGGCCGGAGGCACCGGAGGGGACGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAGGGACGGTGCCGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCCGGAAGTGGCGCAACGATGCCGCTCCCAGAGGCAGGG # Right flank : GAGGGATAACCTCTGCCGTTGACGCCATCGTCAGTTGCCAACAAGGCCGGCGAGTGAGCGGAGACCGGTGTCCACAGAACGGACATGAACGCGGCTGAGGCATCGGGAGCCTAGCGAGAACCGCAGAATCCCGCGGTTTTCCGCCCAACTACATCGCCGGTAGCCTCGGCCATGTCCGCTGCATGGACACCGAACCGCTAGCACCGCGAGAGAACGGCCCATCCGACCACAAATCCGTTGACGGCAAGCACCATGCACGCGTTGATCTCAGGTAGATTCGCGCCAGGTGACCTCACAGGATTCCAGCAAGCGTCACGCGACCGAAACGGCTATACCGCAGGGAGCCCGGCCATCAGGCGCTAAAAACATGGGCGGCGCCGAGAAAATCGGCGACCGCCCCCTCGCGCCCACTTGTCGCTCGCTCACGAGCGCCGTCAGCACACCGGGCAGACCAACATAACCAGGCGCCCCGCACCGGCCCCGCTTCAGCCGCGGCGCAG # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTGAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 2 93761-94668 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXKM01000011.1 Actinomyces johnsonii strain CCUG 34287T contig_0000011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 93761 37 100.0 35 ..................................... TGGTTATCGCGGGTCTAAGCCTCGGCGGTTTCGTC 93833 37 100.0 35 ..................................... ATCGTGGACGACGACGGGCACCAGTGGGTGCAGCG 93905 37 94.6 36 ......................GA............. AGGTCTACGACCGCCTCCTTGACTGGGCCCGCACTC 93978 37 94.6 36 ......................GA............. AGGTCTACGACCGCCTCCTTGACTGGGCCCGCACTC 94051 37 94.6 38 ......................GA............. GAGTATATCCGCACTCTCGATGACTCCTCCGAATTCAG 94126 37 100.0 34 ..................................... CCTGAAAGGAGAAAGTCATGAGTATTGTTACTAC 94197 37 100.0 37 ..................................... GCGTGAGACGGGCGTGTCTCGCGTGTCGCTGGACGAT 94271 37 100.0 36 ..................................... AGCGAAGTCCCTGGCTTATAGCCGAGATTCGCAGGA 94344 37 100.0 36 ..................................... CCATGTCCGTGGCTTACCGGACGTTCCTGTTGCAGG 94417 37 100.0 33 ..................................... TGTGAAGACCACTACCATCTCTGTTGATGAGAA 94487 37 100.0 35 ..................................... ACGCCAACTGGGTGCACCTGAGCACCCGGGTGGTG 94559 37 100.0 36 ..................................... TAGTTAAAAGCGGTGGAAATATGAAATGGATAATTA 94632 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 98.8 36 GTCTTAATGCACCTTCTGGTGCTGGGTGCTTTCTGAC # Left flank : CACGTACTTAAGTTATAAGTTAAAGGCTGGCGTTGGCAACCGTTCTTTCGGTGGCGTCATCGTCCTGCCTCTGCGTCGCCGCTGAAGCAGGGTTGGTGTGGGACATGGATATTGGTCCGCCGACGCGTTGACTGCGTCCCGTGAGCGGGCGACGAGCAGGCGGCTGGGCTCCTTGGCACGGCCCGCCTGGCTTTGCGTCTGCTGGCCGGTCCCTGCGGTAGAGGCGTTTCGGTTGCGTGATGCTTGCTGGAATCCTGCGAGTTCACCTGGCACGAATCCACCTGGGGTGGAGGCCTTGGTTGTCGTCGAGGAGGGCGGCGCCCGTGGTGGCGGGGTGGTTCGGGTCGGCTCGGAGGGCCTGTTCAAGGGGCTGGCGGTCGGACTGACCGTTTTCCGGCGCTGTTGGCAGCCACCGCACGGCAATTCCGGTGAACAGGCCTTCCGGTGCCGGGTGCCTTCTGACGCGGAAACGCCGAGACATTCAAATTGGTCGGCATGGT # Right flank : CTCCTGCCTCTGGGAGTGGCGTCGTTGTGCCACTTCCGGGGGATGGAGCGCCACCGGCTCCGCAAGCACCCCGCGGGACCGGCCGGCACCGCCCCTATTTAACCACTTTTCGGCGTCCTGACGCCAAGCGCCACCGACGCCCCCTCGGGCGCCTTCAGCTACCAACTTCCAACGACGCCAAGCCAAAAGATCGACGTTTCGACCTGTGACTGCAGGCACAACCCGCTGTGGTGGAGGTGGAACCGGGCCCTGGACTCGGTGTCAGGAATGTTTCCCCCGCCGAGCCGCCCGGCTGCCCAGCTTGTCGACGAGCAACCAGATCCCACCGCCGATGAGGACCGACCCGATAAGACCGAAGCCAAGAATCCATCCCCATCCTGCGTCCCAGCCGCCGATGTGCTGGTGCCGGACCGCAATGCCCTTAGCGGCCTCCCAATTGGACCAGATCTCCAGGAACACGCTCAGGGGCAGGCCGATGAAGGTCAGAACCGCCAGGGCGA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATGCACCTTCTGGTGCTGGGTGCTTTCTGAC # Alternate repeat : GTCTTAATGCACCTTCTGGTGCGAGGTGCTTTCTGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 3 109538-109135 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXKM01000011.1 Actinomyces johnsonii strain CCUG 34287T contig_0000011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 109537 37 100.0 36 ..................................... GTTTGAGGTGGGGGCATTGCCTGGGTGCCGTCCCCC 109464 37 100.0 36 ..................................... GTTTGAGGTGGGGGCATTGCCTGGGTGCCGTCCCCC 109391 37 100.0 37 ..................................... ATCTCCTTCAATCGTTGCAAGCCACCCTGTGTGCCCT 109317 37 100.0 37 ..................................... CTGGACGTCGAGACGCCCGCGCTGCTTAATTGATCGC 109243 37 97.3 35 .......G............................. TCAGAAAAAGAAGAGTAAAGAACAGTCATTGTAGT 109171 37 97.3 0 .................................C... | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 99.1 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : ATCGTCCTTGACGACCTCATTGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACGTTATTCATCTTTCTGAGGTTTTCTATGGTGTGTGTCAGAAAGCACCCAGCACCACAAGGTGCATCAAGACGCAACACCGTGACCCTGATGACCCTTAATCCTGACAACAGAAGGCACCTCACACACCAGTGAGGAGCATCAAGGCCGCCTCCCAACGGTCGCCTTGCGCCCTCCAACCGAGGGGCCCCAAAGCCCTAACAGACCGACAGCGGAAGCAGGATGTGTCGACAGTCACAGGCGGGAACATCGATCTTTTGGCTTGACATCGTCGGAAGTTGGTAGCTGAAGGCGCCCGAGGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAGGGGCGGTGCCAGCCGGCCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCTCCTGGAAGTGGCGCAACGACGCCGCCCCCAGAGGCAGGGGG # Right flank : ATATATATCGACATGTGCCGGGACATCGCATGCCCATTTTTACCCTTGTCCGCCAGAATCTCGATATTCTGCCCTCTAGAGCCTCTTCACGTTCCCGCCCTTGAAAGGCCGCAATGATGCGTCCAGCCCCGCCATTACCACCACCATCGTCAACGACACCACCACCTCCACCCCGCCCGCACCGTCGTCGCCGTCGTTCCGATCGCGCGAAACCGGGCCAGCACCTCGGGGAGGATATTCACCCGCTCCAGCACGCGGCGGGCTTTGCATCGTCCGAGGCGGCCACCGGCACCCCGTTCGAGCGCATCAGCTCCCGCGAGGGCCTGGAGGAAGGCTGGCGCATGGTCCTCACCAAGGACGCCTCCGACGGCATCCTGCAGCGCAAGACCAAGGAGTTCGCCGAGCATCTCGATGACTTCCTCACCGAGCTCTCCGAGTCCCTGCGCTCAGGAACCTACGAGCCCGACCCGCTCCTGAGCTTCGGCATCCCCAAGGGCACG # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 4 110239-109834 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXKM01000011.1 Actinomyces johnsonii strain CCUG 34287T contig_0000011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 110238 37 100.0 37 ..................................... TTGTCGGGCATGAGGCCTGTGGCCCAGGACAGGTCAC 110164 37 100.0 38 ..................................... TTTCTTCGCCCGCCTCGTTGAAGTACTGCGTGGGCTCC 110089 37 100.0 36 ..................................... GCTTCCAGGGGCCGGATCGTCCTTGACGACCTCATT 110016 37 100.0 34 ..................................... GTTATTCATCTTTCTGAGGTTTTCTATGGTGTGT 109945 37 94.6 35 .....................C.........C..... GCAACACCGTGACCCTGATGACCCTTAATCCTGAC 109873 37 78.4 0 AA.....G.......C......T...A....C...G. | G,A,T [109848,109856,109860] ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 95.5 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : CGAGGACTCTGCCCCAGGCGGCGTGAAGGCGGCGGGGTGTGGCCTCGACCGGGCCGGGCGCATCGAAGCGGACGAATACGGTGGCGGGCACTCGACGGGGCTCCTTTGCGGCGTGATGAGTGGCGGACATGGCCGTCTACCCCTTACTTCTGGCGACCCTACCGGAGGGGAGGCGGCCTGTATGGGGAGTTCGAGAGGTCGACGTTCTTCAGCATCGACGGCCAGGAGGAGGTGGAGGGGACGAGGCCCAGCGGCGCGCCGGTCGAGCCACGGAAGCACAGTGTGTCGACAGTCACAGCTGGGAACGTCGATCTTTTGGCTTGACGTCGTTAGAAGTTGGTGGCTGAAGGTTCCCGAAGGGCCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAGGGGCGGTGCTGGCCGGCCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCCGCCCCCGGAAGTGGCGCAACGACGCCGCCCCCAGAGGCAGGG # Right flank : CGCCTCCCAACGGTCGCCTTGCGCCCTCCAACCGAGGGGCCCCAAAGCCCTAACAGACCGACAGCGGAAGCAGGATGTGTCGACAGTCACAGGCGGGAACATCGATCTTTTGGCTTGACATCGTCGGAAGTTGGTAGCTGAAGGCGCCCGAGGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAGGGGCGGTGCCAGCCGGCCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCTCCTGGAAGTGGCGCAACGACGCCGCCCCCAGAGGCAGGGGGGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACGTTTGAGGTGGGGGCATTGCCTGGGTGCCGTCCCCCGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACGTTTGAGGTGGGGGCATTGCCTGGGTGCCGTCCCCCGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACATCTCCTTCAATCGTTGCAAG # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 33253-32065 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXKM01000013.1 Actinomyces johnsonii strain CCUG 34287T contig_0000013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 33252 36 100.0 28 .................................... AACGGTCACCTGCTCCATGCGGGCGGCT 33188 36 100.0 28 .................................... CACTCCTTGTGGTGGGTGGCCGTCATAT 33124 36 100.0 28 .................................... TTCTTGGTGCCTTCAGGGCCTCGATGTC 33060 36 100.0 28 .................................... CGCAAAGCCTCGTCCGATGAAATCGACG 32996 36 100.0 28 .................................... GCGGGACCCTCCCGCTGAAACTCCTAAC 32932 36 100.0 28 .................................... AAGGGCGAGATCACCGCCGAGGAGTTCA 32868 36 100.0 28 .................................... ATGAAGGGCTTGTCGGGCCAGTTGGTCA 32804 36 100.0 28 .................................... TCCATCGTCGTGGGGACCGCCGAGTCCA 32740 36 100.0 28 .................................... AGGCCGAGGAAGAGGGGCTCGTTGTCCT 32676 36 100.0 28 .................................... TTATGGGCAGTGACGGCTATGGCTTCTT 32612 36 100.0 28 .................................... CGCGGCAGGATCGAGAAGCGGACCTCCT 32548 36 100.0 28 .................................... AAGAACGGGGGCTCCAGACGCGTGACGG 32484 36 100.0 28 .................................... GCAAGGACGGTGCTGACGTTGACGCCGT 32420 36 100.0 28 .................................... CTCACCAACACCCCCACCGGAAAACGCT 32356 36 100.0 28 .................................... TGGGTGATGAACGGGTCCCGCTTTGTCA 32292 36 100.0 28 .................................... CAGGCCGTCGGCTACTGACCAACTCTGT 32228 36 100.0 28 .................................... ATGGTTTCCTTCATGCTCCGATCCTACC 32164 36 100.0 28 .................................... AGGTAGTCGCTGGTGTTCATCTCTGGTT 32100 36 94.4 0 ..........................A........T | ========== ====== ====== ====== ==================================== ============================ ================== 19 36 99.7 28 GAAGTCTATCAAGGGGTCTGGTGACTGATTCCCAGC # Left flank : CCTTCCGTGAGGACGGCGCCACGCTCCCGACCGTCTTGGAGGAGCTGGCTCAGCACTTGGGTCAGTACTGCGAAGGGGACCGAGCCCGTTTGGATGTCCCATCCTGGACCGGTCCGAGGCGCAAGTCCTGATGGCGGATGATCCGGTGTGGTGCGTGGTCATGTTCGATCTGCCGGTGGCGACGAAGAAGCAGCGCAAGGAGGCGACTCGCTTCCGCCATCTTCTCCTGGATGAAGGCTTCTGGATGGCGCAGTACAGCGTCTATGTCCGCTACTCCCCGACCGTGGCCGGGGAGCCCCGCAGAGCGGGCACGATCCGGAGCAACCTGCCTCGTGGCGGCGAGGTGAGAATCCTGTATGTCACCGATCGCGAATGGTCGCACGCGCTCTGTTTCCGCAACGAAGAGCCCGTCCAGGCCGAGCCGGAGCCCCAGCAGCTCATGATCTTCTAACCTCTAGCGAGGTGTTTGTGCTGGTCAGACCCCCTTGATAGACGTTTTA # Right flank : CGTCGGGGAAGGGTTGGATGGGCGATGAACGGCGTCGAACGCGTAGGGCTGCCGTAGGCATCGCTGATGGCGTTCCAGCGCATCATCACCCATCCACGAATGACCACAAACCCTCTGAAACCTGCGGATGCGTGAAACTACATCACCAGCTGGCTCGACGCCGACCAGACCTGAGTTCCCACGCCGGGCAGCCGTCACCGCGACATCCTCGGCTAGCTCCTCATCGACAGCAACTCCGCGCGCTTCGACAGCCTCCGCTAGATCAACCCCAACAGCAGATAGTTCCACCGCTGCGCGCTGACTCCGTCGGGGAAGGGCGGTGTGTAGGCAGGTGGAACCCGCCCGCACACCGCCCCCGGAACACGGATGGGGGCAATGGCGTCACCGTCCGCTTCACCCCGTCTTGCCCCCACCCGTGAGTCAAGCGGCTCGCACAGCCTCAACTCACCGAGCCGTCGTCCTCCTCGATGCCGGCCGCGGTACCCAGGCTCTCGACGGCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCTATCAAGGGGTCTGGTGACTGATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 197-406 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXKM01000032.1 Actinomyces johnsonii strain CCUG 34287T contig_0000032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 197 28 100.0 33 ............................ GATGGAGATCTTCTTCATGGTCCTCGGAACGGC 258 28 100.0 33 ............................ GCGACGGCCGTGAGCGCCATGCTCCACATCTGC 319 28 100.0 33 ............................ TCGTGGGGGGAGGCGCGGTGACATCCTGTGGGT 380 27 89.3 0 .....................G..-C.. | ========== ====== ====== ====== ============================ ================================= ================== 4 28 97.3 33 GTTGACCCCGCGTGAGCGGGGATGATCC # Left flank : CGCTCAGCCGCTCACGCTCAGCCGCTCACGCTCAGCCGCTCACGCTCAGCCGCTCACGCTCAGCCGCTCACGCTCAGCCGCTCACGCTCAGCCGCTCACGCTCAGCCGCTCACGCTCAGCCGCTCACAGGTGATCAGTGATGTCGGTGGCCACTGCTAGGGTGGCTGTGCTGGCGGGATTCCAGGGGCTGCTATGTG # Right flank : CTTTTGGGCTGGGAAGCCGCTCAGGGGCGCTGTGAGCGTCTCTGAGCGGCTTCCCTCGTTATGTGTGCCCCGTCCTGGCTCCTAGGGGGTTTCGGGGCGTCTACGTGGCTGTGAGCGTCTCTGAGCGGCTTTCTCCGTTGCGCGTGCTCATGCTTGAGTGCGTCGACGTCGTAGCCTTCCTCGGCTTCGCGGGTCCAGGCCCGCAGCTGCTCGTCAGTCATGTGTACCGGCATGCCGGATACCGTAAACGGCTTTGCTAAGTGTTTTTGGGGCGTCTGAGGTCGCTGCGGTAGCCCCGTCCGACGCGGTGGGTGGTCCAGTAGTCGATGGTGGTGGGTGTCCAGCCGCGGATCTGTCGGCCGCCCTGCCCGTCGGTGATGATGACGTCCGGCGGGGGCAGGAGTCCTTTGCGGGTGTAGGAGGCGAGAGTGCCCGAGCTCAGGCCGACGCGTTGGGCGAAGCCGGCCAAACTTAAGTATTCCCGGGGGGGCTTCTTATTG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGACCCCGCGTGAGCGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 89931-90263 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXKM01000008.1 Actinomyces johnsonii strain CCUG 34287T contig_0000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 89931 28 96.4 33 ..............C............. CGGCGTGATTTTCGGGGACCTGGGATTCGGCAA 89992 28 100.0 33 ............................ GTCCTCCCCGGTAACCCAGGTAGTGCGCACCCC 90053 28 92.9 33 ............T.C............. CAGGTTGCGCGACCGCGCGGCCTGGGACTCCAT 90114 28 100.0 33 ............................ GTCCGGCAGGCGCAGGGTTCGTCTCGACGACGA 90175 28 100.0 33 ............................ GCCCGCGATACGCTCGGCTCCGAGCTCGACCAC 90236 28 89.3 0 ..............C........CC... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 96.4 33 GTCAGCCCCGCGCAGGCGGGGGTAGAGG # Left flank : CGGGCTGGATGCTGCCACTCATCGGTGGGCTGGGCCGCCGCCACCTGCCCGTCCTGCGGGGGGTGCTCGTGGCCGGGGGGCCTCGGCCTCCCTGCGTGGGACTCGCGGTGAGAACGGGGGTGGTTGAGGCGAGACTTGCCGAGACCAGGACATTGGCTTCCCTGCCGCGAGTTCTGCGGGCCGCCACGGCTCCTTTGTCGCAATGGACCACCGTTGTGCCGACGGCGGAGGATCCTGAAGGCATCATGCGCATGCTGAAGAAATGCGCCTTGGGGCTCGGCTGCGGACTCGTTGAGGTTGAGCGGCACTCCGAGTCGCGAAGCGACGGAGGCATTGATGTGCAGGAGGACAACGGGCGCTGGCACGTCTCGGTCGCCTTCGACGCGGTGGTGCCCGGGCCGGTTGTCTTCGACGGCACGCTCATGGTTCCCCTGGGGGCCACCACCTTGGCGGTGAACCCACGGCGACCCCGAGCCGACTAACATCGCAGGTCAGCCAGT # Right flank : GCACAGACGTGCGGCTTGCGCTGTGCTGGGCCAGGCCCGCTGGCCCAGGATGCCTATTGCACGAGGGTGGGGTTGTACTGGCCAGGGGCGGCCGGGGTTGATCGAGAACGTACTTCTTCCGCGAGAACTGCGTTATCCCGCAGACGACTGGGGGCAGACCCCAGTGGTCTGCGGGAAAAGTACGTTCCCGAAGGGAATCGCAGTTCCCGATGCGGGAGCGCTGATCCCTGCGCCGTCGGAACGGTCGCCCGCCGCCCCGCCGTGCCGGTCTACTTGGTGGGGGTGCGGCCCAGGGTCAGGTAGCCGGGGAGCGTCTGGTCCTGTCCGGCGCTGGAGAACCGCAGTGGCTGGCCCGATTCCAGTGGGTTGACCACGCGCACCAGGATCGTATTCTCACCCGCCGGGTCCTCCGGGAGCTGGCCGGAGAAGGTCTGGGTCTTGCCGACCTCGATCTTGCGCAGATCGCCACTGAGCGTGGTGCGCCCGACCTCCACACCGGT # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCCCCGCGCAGGCGGGGGTAGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //