Array 1 42837-44146 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOJZ01000016.1 Escherichia coli strain 680 BN4_680_1_(paired)_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42837 29 100.0 32 ............................. ATTTTATGTGCCGCGTTGAGGCGTGGGCGTTA 42898 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 42959 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 43020 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 43081 29 100.0 32 ............................. GAGATTGCGACGCTCCGTCAGCGCATCACAGT 43142 29 100.0 32 ............................. TGGGAACTGGCCCGCGCCATTGGTCAGGGGAA 43203 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 43264 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 43325 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 43386 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 43447 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 43508 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 43569 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 43630 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 43691 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 43752 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 43813 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 43874 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 43935 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 43996 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 44057 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 44118 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTCATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 67641-68340 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOJZ01000016.1 Escherichia coli strain 680 BN4_680_1_(paired)_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67641 29 100.0 32 ............................. GGTGATTTTGACGTGTAAACCGGGCGGATTCT 67702 29 100.0 32 ............................. CCCGTCACCGACGCGCAGTGGCGCTACCGTGA 67763 29 100.0 32 ............................. CAATCACTGATTGAAAACGCGATTAATAGTGA 67824 29 100.0 32 ............................. ATTTGGCGGCACCAGATTTTGCGTCAGATGAC 67885 29 100.0 32 ............................. CCTACGAACAATTCCTCTGAACCGCCCGCACT 67946 29 100.0 32 ............................. GGATCTAACGCGCTGTAAAAATTCCGTGCTTT 68007 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC 68068 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 68129 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 68190 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 68251 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 68312 29 96.6 0 .A........................... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 74074-74943 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOJZ01000028.1 Escherichia coli strain 680 BN4_680_1_(paired)_contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 74074 28 100.0 32 ............................ AATTGTGTCGCGTCTATTGCTCCGGAGATAAT 74134 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 74194 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 74254 28 100.0 32 ............................ GCCGCAACTCACAATAACAGAATCACAAATTA 74314 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 74374 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 74434 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 74494 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 74554 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 74614 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCACCCCGCTC 74674 28 100.0 32 ............................ TCATTGGAATACATGAGTTGCGCCCATTTTGT 74734 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 74794 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 74854 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 74914 28 85.7 0 ....................A...C.CT | T,C [74934,74938] ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 80280-80727 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOJZ01000028.1 Escherichia coli strain 680 BN4_680_1_(paired)_contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 80280 28 100.0 32 ............................ AACGAGCAAAAACGCGCGTACCGGATTGCGGA 80340 28 100.0 32 ............................ ACCAGAATTAATAATCTTTTCATCGTCACGCC 80400 28 100.0 32 ............................ GTATTGCCTGACTATTTCACGCAACAGATCGC 80460 28 100.0 32 ............................ TCTAATATTTCAAAACCCCAACGACTGCCAAT 80520 28 100.0 32 ............................ ACAGGCACCCGGCTGATGTTCGTAGGCGACAT 80580 28 100.0 32 ............................ CACATTATGAATCACACGATGGCGATGCGTGA 80640 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 80700 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGTGCTCCGTGACTGACACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTATTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : AGAACTCCCTTTCGTGGGCGGTACGTAATGATGGTTCACTGCCGTACAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTACAGGCAGCTTAGAAAGGTACTAAATGCGATGATCACCCCGAGCGTGATGTTCACTGCCGTACAGGCAGCTTAGAAACACCGGGCCTGCTCAGTCGCGCCGACGTCCTGGTTCACTGCCGTACAGGCAGCTTAGAAAATCCTGATAATTCAAGTCTGTGATTACCAGTAGTTCACTGCCGTACAGGCAGCTTAGAAATACTTGTGCTGAAGCACTGGCATCCAGAATGCGTTCACTGCCGTACAGGCAGCTTAGAAAATGTTTATTCCCTGATTAATGACGCCGTGTTAGTTCACTGCCGTACAGGCAGCTTAGAAAACATCGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 80950-81337 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOJZ01000028.1 Escherichia coli strain 680 BN4_680_1_(paired)_contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 80950 28 100.0 32 ............................ CACCGGGCCTGCTCAGTCGCGCCGACGTCCTG 81010 28 100.0 32 ............................ ATCCTGATAATTCAAGTCTGTGATTACCAGTA 81070 28 100.0 32 ............................ TACTTGTGCTGAAGCACTGGCATCCAGAATGC 81130 28 100.0 32 ............................ ATGTTTATTCCCTGATTAATGACGCCGTGTTA 81190 28 100.0 32 ............................ ACATCGTTTACTCCGTTCGCCGCGTTAATGCG 81250 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 81310 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AACAGATCGCGTTCACTGCCGTACAGGCAGCTTAGAAATCTAATATTTCAAAACCCCAACGACTGCCAATGTTCACTGCCGTACAGGCAGCTTAGAAAACAGGCACCCGGCTGATGTTCGTAGGCGACATGTTCACTGCCGTACAGGCAGCTTAGAAACACATTATGAATCACACGATGGCGATGCGTGAGTTCACTGCCGTACAGGCAGCTTAGAAAATCACATTTAATTCCGTGTTTCGTTTTGAACAGTTCACTGCCGTACAGGCAGCTTAGAAAGAACTCCCTTTCGTGGGCGGTACGTAATGATGGTTCACTGCCGTACAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTACAGGCAGCTTAGAAAGGTACTAAATGCGATGATCACCCCGAGCGTGAT # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //