Array 1 171175-173594 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGZO01000006.1 Bifidobacterium scardovii strain LMG 21589 Contig06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================= ================== 171175 29 100.0 32 ............................. AGGACAAATACTCGCTTCTTGCCGCAGAGATA 171236 29 100.0 32 ............................. CCACGGCAATCGAACTCGGCAACGGCGAAGGA 171297 29 100.0 32 ............................. GACGTGGACGACCTCGTTGCCTCTGGGCTGCT 171358 29 100.0 32 ............................. CCCTCAAACGTGGACGGCCTCGGCCAGGCCTA 171419 29 100.0 32 ............................. TGGCGGCAGATCGTGTATCCGGCCATCCTGGA 171480 29 100.0 32 ............................. CTCGTGCACCGCAAGGGATACGAGGTCAAACC 171541 29 100.0 32 ............................. ACCCGCGGCCTGCTCGAGGCCATCGCCACCAA 171602 29 100.0 32 ............................. GTAGCCGTCCGGTGAAGTGAGGGGAACCCGGA 171663 29 100.0 32 ............................. GCCTCTTCTACCGTGGCGCGGTCAACGACCTG 171724 29 100.0 32 ............................. TCACGCACCTGGTTGGCGCTGACGGATTCGAT 171785 29 100.0 32 ............................. AAGGCGATCGTGGCGATGGCCAGGGATATGGC 171846 29 100.0 32 ............................. AAGCCGTTGCCCTCTGAGCTTATCGGCGTGCT 171907 29 100.0 32 ............................. AACGACACATAGGTTTTGCGGTAGCCGCGCCG 171968 29 100.0 51 ............................. AGCGCCCGCACATGGAGCGGGGACGCGTGGCGCATCACCCGTCGCGGCTCG 172048 29 100.0 32 ............................. GAGACGCGTTCATGAGTGGCCGTCTCGCGTTG 172109 29 100.0 32 ............................. AGTACATCGCGCGGTTCGCCGAATGAGAGGAG 172170 29 96.6 32 ............................T GCCAGGTCACCGTGCACACCGCCTACCCGCCC 172231 29 100.0 32 ............................. CCCATGTTGCGCAGTACGCCGGCAGCGTCCCG 172292 29 100.0 32 ............................. CTCAAGGGCAATGCTCTGGACATGTGGGACAG 172353 29 100.0 32 ............................. GCGTGGCGGTGGTTGTCCCGGGTGATGATCCA 172414 29 100.0 32 ............................. CGCCGGCGATGTTCTTGCGATACTCGACGCGG 172475 29 100.0 32 ............................. CACTTGCGATCCCGGCAGGTGGAACGCGCGTT 172536 29 100.0 32 ............................. CGTTGACGTTGCAGCTCGCGGTGATCTCGCCC 172597 29 100.0 32 ............................. TGTACGACTGCTGGGCCTGCGCCGTTGCGGCA 172658 29 100.0 32 ............................. ATCTTCTTGGCGATGCCGTTGGCGACCATGAC 172719 29 100.0 32 ............................. GTCACGGACAAGATGTTGGACTCCGGGTATCC 172780 29 100.0 32 ............................. CTGACGCCGGTTGAACAGGTGACCGGCACCCG 172841 29 100.0 32 ............................. GCCGAAACCCTCCAGCAGGTCCTCGCCAACGC 172902 29 96.6 32 ......................C...... ACGGGGTTGCAGGCGATGAAGGCGGAGATCAA 172963 29 96.6 32 .........A................... TTCAAATACGTCCCACTGTTCGGCTGGTGCGT 173024 29 100.0 32 ............................. CAGCTCAACGCCGCGCTCACCTCGCTCAGGGC 173085 29 100.0 32 ............................. GCTGCGTGCCGCCGGCAAACCGTTGCATCCCG 173146 29 100.0 32 ............................. ACAATGGACGGAAGAGGAGAAATACTCACGAC 173207 29 100.0 32 ............................. GACGCCGCAGTCAACGACGAGGCCACGCCGGA 173268 29 96.6 32 ............................T GACAATGGTCTGATCGGCAGCCTGTTTACCGG 173329 29 96.6 32 ............................T TCGCAGTTCTTCACCAGACGCATCTCGTCGGC 173390 29 100.0 32 ............................. TTTGGCGTGGACAAGGATCACGCGAGCCTAGC 173451 29 82.8 87 A...G.......C...A...........T GCATGATCCCGGTCTGTCTCACCCCAGCAGACGTTTACTCTGCACGCGCGATAACCCGTTTGCGGTCGCCTTCACGTTCGTGACTAT A [173471] 173568 27 82.8 0 .......T...--.....A.........A | ========== ====== ====== ====== ============================= ======================================================================================= ================== 39 29 98.7 34 GTTTACCCCGCATGCGCGGGGATGATCCG # Left flank : GCCGACCGCATCTCGCTGGTGCTGACCGTGCCGGCTGATGACGTGGCCAAGGTCGAGCAGTTCCGCGATCTGATCGCCCACGAGACGCTGGCGACTTCCTTTGAGGTGAAGGAAGGCGCCGAGCTCGGTGTGGAGGTTGTTAAGGCGTGATGCTGTAACGTATTTAGTGCTCGCAGGGATTTTGGATCAGTCCAAGGTCTCTGTGGGCACGCGCCATTTGTCTGCGGGCACGCGCCATTTGATGGTGCCAGCCCCTGCATTTGCGGGGATGATCCGTTAATGATGGCCTAAAGCTGATTATGCGACTAAACTCAAGTCAAAAGCAGAAGCGCAATGGAGTTTTGAAAACCAAGAAGAAGGCTGGCTGGAGTAATGCCTCTCGATATAGGCGTTTTGTCCGATGACCGGTAGCGAGGAACAATAGCACGAAGATTGGAGCCACTGTGCGAATCCAATTTTTGAAGGCCCAATGCCCAATAGTTTTCGCATAAAATCGGACT # Right flank : AGACAGTTCCATGAGTATTAGCCATGCTCATGGGACATTTTATCCACTGTTTTCGCGATCTCAGCGTGCGTAGTATGCGTGCCAACGTCGAGTTGTCGGTGCAAGGGTGAGTAGTGAAACCGGTTGTCCACCGTTGTTAGCGGCGGAAAACGGCTATATATAGATCCGGTCTCGACGATCGCGCACCGACAACTCGGGTTTTCAGAGCATTCGACATGAGTTGTCAAACTTGTCGTTTCGTTTCCGGAAGATCTATACTCTCTTGCATCGGTGAAGAGTACCGGCGGCAATGGTGCCGTCCGATTCGCCGATCCTCAGTAGTTCGGAGGTATGCATGTCGAAAGACGCACAGACGCAACATACGCAATCGCAACCGCCGGCGCCGGCATCGTCCGGTGCCGGTTTGCAGAAAAGCCTCAAACTCATATTCGTCTACACGGTGGCCACCGGCTGCATGTTCACGTATGTGAGTTATTGGGATTCCGTGTTCTTCAGTTATT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTACCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 187163-188900 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGZO01000006.1 Bifidobacterium scardovii strain LMG 21589 Contig06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 187163 29 100.0 32 ............................. CGCGCGACGCATGGATCAGCGGCCGCCTGCCC 187224 29 100.0 32 ............................. GACACGAAGCAGCCGAACTACCGAAGGCATTG 187285 29 100.0 32 ............................. CATGGCGTGCCGGACAGGGAGATCATGGCGTC 187346 29 100.0 32 ............................. GGACCGTGGCGCACCGACTACGAGGCTATGGC 187407 29 100.0 32 ............................. ACCTTCTGCATATCCGCAAGAAGCTCTTTGTG 187468 29 100.0 33 ............................. CATTTCTTTTCATACCTGAGATGAATCCCGGTG 187530 29 100.0 32 ............................. AATTTTTGACAACTGCCGCGGACGGCAAGCAA 187591 29 100.0 32 ............................. AAACGTGTCCTTCCCATCTCGTCGGCCATCTG 187652 29 100.0 32 ............................. TGGGTATCCGCCGCATCTCCAACAGGGAGCTC AC [187665] 187715 29 100.0 32 ............................. CATGCTCGCCCAAATCGCCACATCCCAGGAAC 187776 29 100.0 32 ............................. TCGCTGGGCTGGTATCCGGTGAGGGTGGCGAA 187837 29 100.0 32 ............................. CCCCTATGCCGGGTATGTGCGTTGCCTGACTC 187898 29 100.0 32 ............................. GCGTCGAGAAGCCATGTCGTAGGACTGGTGGG 187959 29 100.0 32 ............................. AGGATGCGTGCCCATCGCCATCGTATCCTCCT 188020 29 100.0 32 ............................. GATAAGGCCCTATGGCGAGTTTACGACGGCAT 188081 29 100.0 32 ............................. TGTTGGGCTTGAGCACGAAGTTCTCATTGAGA 188142 29 100.0 31 ............................. GCATCAGATGGGCCAAGGCAAAGCCGACCGG 188202 29 100.0 32 ............................. AACATGGCGGCCAACAGCATCACATCCGACAA 188263 29 100.0 32 ............................. CTCCGTCCCAACGTGACGTTCGGAGCGGTGCA 188324 29 96.6 32 .....G....................... ATCGTGTCCGCCGCGATCATCGCGGACAAGCT 188385 29 100.0 32 ............................. CTCGAAATGGATTTCCCCGTCGAACCCGGTAT 188446 29 100.0 31 ............................. ACGCCAGAGTGGGGAAATCCACGACGAATTC 188506 29 100.0 32 ............................. TTGTTGATCGTGCCGGCGATGTTCTCCACGCC 188567 29 100.0 32 ............................. CGAGGGAACGGGTGAGATCGCATATGCCGGTG 188628 29 100.0 32 ............................. CGAGGGAACGGGTGAGATCGCATATGCCGGTG 188689 29 96.6 32 ............................T GCCTCCCGATTCGGTGACTCCCAACCGGTCCG 188750 29 100.0 32 ............................. TACTTGGATGCAGTGAAATTGGGCGAGGCTGG 188811 29 100.0 32 ............................. TCGGACGGCGGCGTGTCGATGAAGGACAGCAT 188872 29 96.6 0 .......T..................... | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.6 32 GTTGGCCCCGCACGCGCGGGGATGATCCG # Left flank : CGGTTCGTGAGGATTTTCGTGCGATGCGGAATGAGGAATCATCGTGATCGTCGTGGTATTGACGGTTTCTCCTCCTAAGCTGCGCGGTCATCTCACTCGATGGTTGTTTGAGATCTCCCCGGGCGTATATGTGGGAAAGGTCTCTTCCCGTGTTCGAGAATTGCTTTGGGATCAGATTCTTGACAACATAGGAGAAGGGCGGGCCATCATGGTCTATTCCTCCAATAATGAGCAAGGATTGGAATTTCGGACACACGGGCAGGAATGGCAGCCTGTGGATTATGAGGGCCTAGAACTGATCATGCGACCGAATACCAGCCAGAAGCAGCAACGTAATGGTGCCAAGAAGACTGGCTGGAGTCGGGCTTCTCGCTATCGTCGGTACGGAAGATAAACTGATTACAGCGAAAAAATAAGAAATACAAGGATGCGGGATGGTGACTGTGGCAATCCAATTTTTTCGGTATTTCATTCCGCGGTTTTCCGCATAAAATAACACT # Right flank : GTGCGTTGAAACGCGCCGGGATCGACAAGAGCAGCTGGCCCCGTGTGCGGGGATGATACGAATTGGGAGAAATTCCCTGAATAATTTCTATCCTCCGTTGGTCCTGCGCGTGGGAGATGATCTACACAATGGCGTTATGTGCCTGTTGGCTCTGCCCTCGCGAGAATGACCTAGACCGTGATGGTCGAGTGGCTCTCAGCGTGTTGTTATTAGCTCCGTGTATACGAGGATGGCTTGTGTAACGGTGTGTGCGTGGCTGTTATCGTTCCGAGCTTGCTATCAAAAAACATTAATATACCGAATCCCGAAACACTCTGTTCCATATCGCGCGACGCGCCAAGCCACGATTAACGCAGCTGTTCCCAGCGTCTTGGTAATGTGTGTCTCGTGAATCAAACGGCATCTGATAACGCTGAAGAGTTCGGGTTCCACACCGGGGACATCGTCCAGGAGTGGTTGTGGGACGACGACGTGGATGACTCCATCCGCGCCAAGATCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGCCCCGCACGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGGCCCCGCACGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //