Array 1 8721-7290 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXQ01000098.1 Salmonella enterica isolate STY46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8720 29 100.0 32 ............................. GCCGAAGCCATCAAATCAAAAACAAAATTATC 8659 29 100.0 32 ............................. GATTTTGATATCCACTGCCCACCGGTGGGGAT 8598 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 8537 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 8476 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 8415 29 100.0 32 ............................. GTGGTCCTCAAGTGAGTCTTTGGAAAAACCCA 8354 29 100.0 32 ............................. GGATCGGCAAACTTGTTTTAACGCCGGACAAC 8293 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 8232 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 8171 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 8110 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 8049 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 7988 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 7927 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 7866 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 7805 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 7744 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 7683 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 7622 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 7561 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 7500 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 7439 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 7378 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 7317 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 64985-63430 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXQ01000018.1 Salmonella enterica isolate STY46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64984 29 96.6 32 .........................G... CCAGCTCGAGCACTTGCGACAACAAACACACG 64923 29 96.6 32 .........................G... CGCCTGATTGAATTCGCGGGAATTGCAACCCG 64862 29 96.6 32 .........................G... TTAACTCTTTGCTGGCTCTTACATACGGCGGC 64801 29 96.6 32 .........................G... GAATACCGACGCTTGGTTAAACAGGTAATCCG 64740 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 64679 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 64618 29 100.0 32 ............................. GGGAACAACACATCACCCCTCACCGAGGGCGG 64557 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 64496 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 64435 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 64374 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 64313 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 64252 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 64191 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 64130 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 64069 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 64008 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 63947 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 63886 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 63825 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 63764 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 63703 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 63642 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63581 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 63520 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 63459 29 96.6 0 A............................ | A [63432] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGTTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //