Array 1 121531-120036 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHHW01000057.1 Salmonella enterica subsp. enterica serovar Montevideo str. CT_02035327 SEEM5327_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 121530 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 121469 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 121408 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 121347 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 121286 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 121225 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 121164 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 121103 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 121042 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 120981 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 120920 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 120859 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 120798 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 120737 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 120676 29 100.0 33 ............................. GTACAGAAAAAAAGAGGCGTCGCATGTGGCGAT 120614 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 120553 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 120492 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 120431 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 120370 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 120309 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 120248 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 120187 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 120126 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 120065 29 93.1 0 A...........T................ | A [120038] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 219612-220005 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHHW01000045.1 Salmonella enterica subsp. enterica serovar Montevideo str. CT_02035327 SEEM5327_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 219612 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 219673 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 219734 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 219795 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 219856 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 219917 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 219978 28 96.6 0 .....-....................... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : ACCACTGTCCGCAATCTGTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 39-616 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHHW01000049.1 Salmonella enterica subsp. enterica serovar Montevideo str. CT_02035327 SEEM5327_60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 39 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 101 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 162 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 223 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 284 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 345 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 406 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 467 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 528 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 589 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 10 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAACCGGAGATCCCCCAGCGTGAATATCTGGGAGTGTCG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //