Array 1 1113810-1114352 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RBMG01000001.1 Rothia sp. HSID18069 NODE_1_length_1351879_cov_84.059387, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	====================================	======================================	==================
   1113810	    36	  97.2	    35	......T.............................	GCCAATTTCTCAGCCAAAACCGTATCCTGGTACTC   	
   1113881	    36	  97.2	    36	......T.............................	AGAGACGCCTAGCGCGTCTACTCGCTTGTCGCCGTC  	
   1113953	    36	 100.0	    35	....................................	AACCCAGCCTGGTAACCATACTTCTTGATCGTCTG   	
   1114024	    36	 100.0	    38	....................................	TCCCCGCGCCCACCAAACCATACTACGGGCGCAAAACA	
   1114098	    36	 100.0	    36	....................................	GCAGGCGGTATTGAAAAAGTCTTTATGCCCGTGAAT  	
   1114170	    36	 100.0	    38	....................................	GAAGGGTATAACGGCTTAACAGCGCCGAACGACCACAA	
   1114244	    36	  97.2	    36	......................T.............	GCCGTGGTGGCTCACGCTTTCTTCGCTGCGGGTGAT  	T [1114268]
   1114317	    36	  97.2	     0	......................T.............	|                                     	
==========	======	======	======	====================================	======================================	==================
         8	    36	  98.6	    36	CCCTCAATGAAAGTCACCCATTCTCATGGGTGAGAC	                                      	       

# Left flank :   CCACGAAAGACTTTGTAACCTTGCCGGAAGCGAGAGTCAGGTTCATTGGTTTCCTTTCGAAACAAAAAACGCGCCGCGCACCACCGGGAAGACCACTCTTAACCGGAAGAAACAGGGCACGCATCCAAAAGCATCCTCAATAATGCTCTACCCATAATTTTTAGCGAACTCCCAGGGTTTTACAAACCGAATACCGAAAATATACAAAAAATTACTTTTATCACCGCAGCCCATGAAAAAACGGTAGACGCGAAGCTGACGGTTAGAAAACACAGCAAAAGAAAATTAAATAAAAGAAAGCGGCCAACCCACCCAAAAAAATTTCGGGCAGGCAAGCCGTTTTCTAGCAGACCCTACGGGTGCAGGGAACGATCAGGAGCCTTCTCTATTAACTGTAGAGTATAGACCCCCCTCCCCGCAGGTGCACAGCACATGCTGAGGGCGGAATCCGCAAAATATTTTAATAAAACCAGTGGCAAGGAGTGGGACGCTACAACGGA
# Right flank :  CGGCACCTAAAAAATTCCAGTAAATTCCTGGTCTCTCAGGTACTTTCGCGAGCGTAGGGACAACCGCTCATGTTATTCAGTCTATCGGAGGCAATCATTCAGACACAAAACGACTCTGACAAGGTGTTTCACTCACGCGAGCGAAACCCGGGATTTACGGTAAGCACCAGGTGCTCGCGCCCATAATACATATATTAGAGGATAAGCACGTCATTATCTGTGGTGTCCCGCGACTGCCCCACATAGCTAAAACGCTTTTCGCCAAGTTCTGAGAGCCTACCAAGATCACAAAACAGTACTGAATCTTCGCTGGTCTCTACCTGCTGCCCGATTTCGTCCTTTAGCCGAAGAAGCTTTGAAGGAATAATATCAACGATAAATACACTGTATTGTATCCGGTCACCATAGGTTAAGAGCAGCTTCGCAATCCGTCCACGACGTTTATCATCCGGAATGTCGCAATAAGAGTACGCCGCGTGTCATCACGCCTCATCGTACTT

# Questionable array : NO	 Score: 6.17
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CCCTCAATGAAAGTCACCCATTCTCATGGGTGAGAC
# Alternate repeat :   CCCTCATTGAAAGTCACCCATTCTCATGGGTGAGAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [10,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-6.60,-8.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-12] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.78,0.37   Confidence: MEDIUM] 

# Array family : NA
//


Array 2 1122808-1121898 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RBMG01000001.1 Rothia sp. HSID18069 NODE_1_length_1351879_cov_84.059387, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                        	Insertion/Deletion
==========	======	======	======	====================================	=======================================	==================
   1122807	    36	 100.0	    36	....................................	GAGAACATTGTCAAACCTGTTTTTGATGGTGTAGTG   	
   1122735	    36	 100.0	    38	....................................	TTCGAGCACCGCACAATCTGGCAAACCCTGGAATACCG 	
   1122661	    36	 100.0	    37	....................................	GATCTTGGGACAGGCATCTGGCGAGAGTATTTCGACG  	
   1122588	    36	 100.0	    36	....................................	GCAGGTGGAAGACCTGCTAGACCTGTCCGGCGGGAA   	
   1122516	    36	 100.0	    37	....................................	AAAATGGCGCAGTACATCGGGGCAACCACAGAATGGC  	
   1122443	    36	 100.0	    38	....................................	TGGTCTAGTGTCACAATTTGGGCAAGCACTGTGCGGGC 	
   1122369	    36	 100.0	    36	....................................	ATCGGCGTGATAGACGACGACCTCACCTCCGCCGTT   	
   1122297	    36	  77.8	    38	TCTC....CA......TG..................	TCCCACGGCATCTCCATAGACACGCTCCAGTTCCTCGG 	
   1122223	    36	 100.0	    36	....................................	TAATATTCCACCCGATTTCTGGGTTGCGCTCATGGA   	
   1122151	    36	  88.9	    39	........CA......TG..................	ACCTACGCCCAGACATACCCGGGGCTGCTTAACGAGCTC	
   1122076	    36	 100.0	    35	....................................	ACTCCCCCGCCGGAGACAGGTGGCACTGGTGCTGA    	
   1122005	    36	 100.0	    36	....................................	TCGGTGTAGCAGACGCCAGTCTCGGGGTCTGCCAGG   	
   1121933	    36	  86.1	     0	........CA......TG................A.	|                                      	
==========	======	======	======	====================================	=======================================	==================
        13	    36	  96.4	    37	GTCTCACCTGTGAGAACAGGTGACTTTCATTGAGGG	                                       	       

# Left flank :   GCACAGCAGCACCCCGATGAGAAAAACCTCAGAAAAATATTGGCCATGCTCACCAGTGTTTATGCTTGTCAGAGCGTTCTATGGGATAGTTTTCCGGGTCCAGAGACGGAATTTCACGCCCGCCAGGCCCGTGAAGACTTGCAGGGTGCCCAACAGTTCGGTATAGTATTCTTCGTTGCGCGGTTGTAGCTCAGTTGGTAGAGCACCACCTTGCCAAGGTGGATGTCGCGAGTTCAAGTCTCGTCAACCGCTCCACCAAGCCCCCAAAGGTAAAACCTTCGGGGGCGCTTTTGTATTGTCGCTCGGTATTGCTGTGAGGTCTCGTGAGCACCTGGTGCTTACCGTAAATCTCGGGTTTCGCTCGCGGGGGTGTATGTGCAGGTCAGGGCCGTTTTTGTGGTCATATTTGTGGATATTGTAGACTGAAGATCAGTGGTTTAACCCTCGCGCTCGCGTAGCCTCTTGAGATGCCAGTATATTACTGGGGTTTGTGAGGGGCA
# Right flank :  CAGCTAAAAGTTTTCGAGGCAACCAACTTTATGAGATTGAAGACACGTGACAGTCTGGGACTTATAGGCGAAAAGTACTGTTACTATGAAAAGCGGACGTTGAACGTTGGTTTGTATTAGGGCTTCAGCTCAGCCCCAACCATTGTTGTAAACGTTTGCTCCCAACATAGGATACGTTGGGAAAATTACCTTCTACCTCTGATATAGGTAGATGCCACAGAAATATCTAGAACAATAAAGTTCTATCGTCCGAAGGGGATAATGATGTCTGCACCTGAGAAAGTTGATATTAAATTTGAGGATCTGAAGAGGGCATGTGCTCCTGGTGGCGCCTCAACTCTAGTCTCGGTGACAGAGCTTAAACCTGCTGCCGGAGAGCACGCATCAGTTGCTCCAGCTAAGTTTGTTGAGGACTCTAAAAACTCTACTAAGCCGGTTTTCGCTTTTGAAACCCGATATATTGATGGTAAAGCTGCCCGGGTGGTACTCATTGATAGTAA

# Questionable array : NO	 Score: 3.08
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCACCTGTGAGAACAGGTGACTTTCATTGAGGG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [10,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-6.50,-8.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [9-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.64,0.78   Confidence: LOW] 

# Array family : NA
//