Array 1 12950-14680 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBIH01000037.1 Phocaeicola coprophilus JCM 13816, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 12950 47 100.0 30 ............................................... CTATGCGGTGGATATTGACGGTGAGGTGTC 13027 47 100.0 29 ............................................... GAGTTGTCAAGCGTGCCGTATCTGGATCT 13103 47 100.0 29 ............................................... TAGAAGGATCCGACACAGATACTATAATC 13179 47 100.0 29 ............................................... AAGAAATTGCTAATATTAGCCCAAGCCCG 13255 47 100.0 30 ............................................... ATATTTGCAATACCCAGCAAAATCTCCAAG 13332 47 100.0 29 ............................................... GACTTGAACAAGAAACACAGAAAAATCAA 13408 47 100.0 30 ............................................... CGCAAAGGATATTAGCTCTTCGACATCTTT 13485 47 100.0 30 ............................................... AAGCGGAGCAAACATTAATATGTTTGCGAA 13562 47 100.0 29 ............................................... ATAGTAAAAAAAGTTAGTATCTTTGTAGT 13638 47 100.0 30 ............................................... TTCCCTAGTATATTATACAAGATCACTACA 13715 47 100.0 30 ............................................... AACATTCCTTTACTCTATTTTCTACGTTTT 13792 47 100.0 30 ............................................... AAGACAGAAAGGTATGAGCAGCTTTAAGGA 13869 47 100.0 29 ............................................... TTGAATAGCGCCTGTTTCTTTTCAAAATT 13945 47 100.0 29 ............................................... AAATGCAAATAATAACCAAAAACTCTCAG 14021 47 100.0 30 ............................................... TTCTTTACCTATAATAAAATCACATATAAA 14098 47 100.0 29 ............................................... TGTATGCCTTGCGCACCAATTATCATTAC 14174 47 100.0 29 ............................................... TGTATGCCTTGCGCACCAATTATCATTAC 14250 47 100.0 30 ............................................... TTAACTGGGGAGAGGTTGGTAATGTTTGTT 14327 47 100.0 30 ............................................... GCATGCATGAATGTTCCGTAAGCAGCCCTT 14404 47 100.0 30 ............................................... TACCGATTGCGTGAGATCCTTGCAGACAAA 14481 47 100.0 30 ............................................... AGTTAAATGGAAATTATCGTTTGATGGATA 14558 47 100.0 29 ............................................... GGATGCTTCAATCACCTCATGAGATTGAG 14634 47 85.1 0 .............................T..G.GT.....G..CG. | ========== ====== ====== ====== =============================================== ============================== ================== 23 47 99.4 30 GCTGTAAGTTCTTATGCAAAGTTACTAAAATGAAAGCAAATCACAAC # Left flank : CTGCCTCTTTATATAAATGCTTTAGTGGTGAATTGCGTAAAATTGCTTATCCAGAAATGTGATGGATAGATACAGTGAATATCGTATTATGTGGATACTTGTATTTTTTGATTTGCCTACAGAAACTCAAAAAGACAAGAAAGCTTATACCTTGTTTCGTAAGAACCTGCAGAAAGACGGCTTTACAATGTTTCAGTTTTCTATTTATGTTCGCCATTGTGCCAGTTATGAAAATGCAGAAGTTCATATCAAACGTGTCAAGTCTTTCCTACCGGAATTTGGTCAAATAGGGATTTTATGCATAACAGATAAACAGTTTAGCCAGATAGAATTATTTTATGGGAAGAAGCCTCAAATTAAGAATGTTGCTGGACAACAATTGGAGTTGTTTTAGAAATAAAAAAATCCCGTATTTAAACGGGATTTTTATTAGAAATATTTCTTTTTTATTTCTAAAACGCTTTGCAACTTATTGGTTCTTATCTAGTTATTAGATATCA # Right flank : CACAATACCTTCGTCCGTTGAACTGGTCAATGCAAAAAAAACGACCGCACGATTGGCCCTCAACGACCGCACGATTGAGCTCCAACGACCGCATAATTTGCCTTGATCGACCGCACGATTCCGGAGGCCTGTCAGAATGAGTTTTCAGAGGCTGGAAATACCTTTGGGAGAGGTGAAATAAAGCCCGCGGGCTTTTTAAAAAACGTTTCGGGCTTTGAAGGAAAAGACTTCGGGCTTTTGAGTAAAACGTTTCGGCGTTTTTCTGTGCTTATGCTGAAGCTTTTCTGTTAAGAATCTTCTTGAGAATATTTTTTCTTGCAATGGCAAGTCCGGAGGACAACGGCTCATTGTCCAACAGGCTCAGAATGTTTTCAAGTTCTGACAATAAGTCAGTATGAAACTTGCACTGTTCGTATGAAAGCTTTATGCATAAGGCTCTGACTCCACATGAGTTTTCACAGGACGTAATTCCGGACAGGCAGTAATCGATGAAGTCGGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTAAGTTCTTATGCAAAGTTACTAAAATGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GCTGTAAGTTCTTATGCAAAGTTACTAAAATGAAAGCAAATCACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.70,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 256-25 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBIH01000038.1 Phocaeicola coprophilus JCM 13816, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 255 33 100.0 33 ................................. TGTTTGTGTGATTTTTTACAAAACTAGCTTATT 189 33 97.0 33 ................................T GAAAAGAATTGATGAACTCAAGGTGGTTTATCA 123 33 100.0 33 ................................. GCTAGTTATTAACAGAACTGACGAAACAGAGGA 57 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================= ================== 4 33 99.2 33 GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA # Left flank : ATATTGATGATTATCCTGTATTTTTAATTAAATAGTGTATTATGTACATTCTAGTAACATATGATGTGGACACGACAAGTAAAGAAGGCGCTCGTCGTTTACGATGTGTGGCTAAAGCATGCCTTAACTATGGGCAAAGAGTACAAAATTCTGTATTTGAGTGTGAGGTTACTGAAGCACAGCTCTGTACATTAAAAAATATAATTGGCAATGTTATTGATACAAAACAAGATAGTGTCAGGTTTTATTATCTTAATCGAAACATAGCCAGAAGAGTAGAAGTTTTAGGGAAAGAAACATCATACGATGTAAATGATGTAATGATTATCTAAAGTGCGAAACTTATGTAATACACGTTTCCTTGAGTTTTCGCACATATTGAAATATAAGGAATTACATTTTTACATTTAGTATAATATAATCAGAACTGTATCTTAATTATTAATTTCGCAAAAGCTACAGTTTAAATATCTAGAAAACTGATACATATCTAAGAATCA # Right flank : AAATCTAGACATAGAAGGATGCATA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 24-587 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBIH01000109.1 Phocaeicola coprophilus JCM 13816, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 24 33 97.0 33 ................................A ATACACGTGCGCCGAAAAAGACACGTAAGACAA 90 33 100.0 32 ................................. TGTTTCATAAGTTAGCAAGTGTCTAGCTGTAT 155 33 100.0 33 ................................. CCGCCCAGCGACGGGTTGGCCCATCGCAGCAGG 221 33 100.0 34 ................................. GATATTGGTGCTGTAAACTTTACGAGAGATAACC 288 33 100.0 33 ................................. ACCGCTGAGTTTTTCTTGTAAGGAACATTGCCT 354 33 97.0 33 ................................A ACATCAAAAAGCGCATAGCAAAGAAAGCTCTGG 420 33 97.0 34 ................................C GGATGTTGTCAATATTGGAATAGCTGCATCCCAG 487 33 97.0 35 ................................G ATTAACAGGGCAGAAGTCCTGGGCGGCAACGTCTG 555 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= =================================== ================== 9 33 98.3 34 GTCGCACCCTGCGTGGGTGCGTGGATTGAAACT # Left flank : TAGAAGGAAAACCAATTTGTATTG # Right flank : CTAACTTTGTATTGCAAGGTGAACTACCGCTAAACTAAAGATTTAGCGGCTTCGGAGATACCAATACCTCCTCTCTTTTCCTGCTTCTTCCTGCCATTGCTTTTTAGGACACGAGGTCGGTCATCCACAAGAGGACAGTCCACAGGCTTGACTTTCCCAACGCTCCGTGGGTAGGGCTTTCAAGCCAAATTCCTTGATGTTGCAAGCGGCATTGAAGTCCCGGTCGTGATGTGTACCACATTCCGGGCATGTCCAACTGCGCTCGCTAAGATTCAATCCTTTGTACACATGGCCGCATTTGCCGCAGGTCTTCGAACTTGGGGCAAAGCGGTCTATCTTAATGAGGTTCACACCATACCAACTGCACTTGTATTCAAGCAAAGTTAGGAACATACCGAAAGAAGCATCTCCTACGGCTTGTGCCAAATGGTGGTTACGCTGCATCCCTTTCACGTTCAAATCTTCCATGCAGATAGTGCGCACTTGGCTGTCGTGCGTGA # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGCGTGGGTGCGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2380-3202 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBIH01000109.1 Phocaeicola coprophilus JCM 13816, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 2380 33 97.0 32 ................................T CAACTGGATTGACAAAAGGAACCGGAAGTTTC 2445 33 97.0 33 ................................T GCAAAAAGTAGAGGCATTGGCTGATTTCTTTGA 2511 32 97.0 33 ............-.................... TGTCATGGGGCGATATGGATGAAAATGGGAAAC 2576 33 100.0 33 ................................. GGAAGCCGGAGTCAATCCGGAAGTGATCATCAA 2642 33 100.0 33 ................................. AGACTTATCCCAAATTGAGGATCGGTAAATACA 2708 33 100.0 33 ................................. GTGTAGCCAGCGTGACAAACAACAACACGCAGA 2774 33 100.0 33 ................................. TAATTCTATGGCATAACTGTACCCGCATGGGTG 2840 33 97.0 32 ................................G TTGAAAAGTACAAGTACCAGTATATTGACAAG 2905 33 100.0 33 ................................. TATAGATTTGGTCAGGATAATCCGGTTAATATA 2971 33 100.0 33 ................................. TATAGATTTGGTCAGGATAATCCGGTTAATATA 3037 33 100.0 33 ................................. CTAAAACCTACTATATCGGCGAAGCTAAAAAGC 3103 33 97.0 34 ................................G CCATCTTGTCCTTCACCTGCGTGTCGATGTCGGT 3170 33 97.0 0 ................................T | ========== ====== ====== ====== ================================= ================================== ================== 13 33 98.6 33 GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA # Left flank : AAAATGAGACCATGATACAGAAAGATTACATTTCAAAGAACCACTCGAAGTTTCTCATCAAATATCACGTGATATTTGTATGCAAATACAGGAAGAAGCTACTCATTGGAGCAGTGGAATATGACATGAAGCAAATCATGCAGAACATATCAGACCTGTCAGACTTTAACATTGAGGTCATGGAAACCGACAAAGACCATATTCACATGATGATATGCAGCGAACCAAAACTCTCTCCGCTGCAAATCGTAAGGAGGCTAAAACAAATGTCAACAACTGCCATTTGGAAAAGACATGAAAATTACCTTAGACATGTATTTTACTGGGAAAACACATTTTGGACGGATGGATATTTTGTGTTATCAGTCGGAAATGTCAGTCAGGAAACCATCAAAAAATACATCGAAAAACAAGGGTAGCTGCGCTACCCCACATTTTTCATCCCCTAAACTGAAGATTTAGGGGTTTTCAAATGCGAGTTCCTATAAAACAGATGTTTA # Right flank : TTACTCTTTTGATTATTTTTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //