Array 1 1701-4604 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKNY01000032.1 Streptomyces albidoflavus strain CR10 Scaffold18_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1701 29 100.0 32 ............................. GAGCGGCAGCCGATGACGGTTCCGGAGGCGTT 1762 29 100.0 32 ............................. GTTGAGCAGGGCCCTCATGTGGATCACGTTGA 1823 29 100.0 32 ............................. CCGGGGGCTGCCCCGACGCTCACCCCGCAGCC 1884 29 100.0 32 ............................. TCGTACTGCATGCGGCGGCCGTGGCAGCGGGG 1945 29 100.0 32 ............................. TCACGTACGCCATGTGCGTGATCCCATCCACC 2006 29 100.0 39 ............................. TACGTCAACGGCATCTACGAGCGCGGGCGCAAGGCGATC 2074 29 100.0 32 ............................. TCGCGCCGGCGGATGTACCGCAGCGTCGTCTC 2135 29 100.0 32 ............................. TACCGCACCAGGGCCCAGCTCTGGGCGTGGGT 2196 29 100.0 32 ............................. CCGTCCTCGATCGACTCCCGCACCGCCTGGGC 2257 29 100.0 32 ............................. TCGTCGTGGAGGTCGGAGTCGTAGCGGGGGAC 2318 29 96.6 32 ............................T TCACCGCCAGCCACCTCCACATCACCGACACC 2379 29 100.0 32 ............................. CTGTGAGGGCGACTCGGCCGTGATGGCAGGTC 2440 29 100.0 32 ............................. CGGTGGTGACAGGGGCGGGGGCGGGGGCCGGA 2501 29 100.0 32 ............................. CTGGGCTGTCCGGGGTGTCGGTGGCCGCGATC 2562 29 100.0 32 ............................. GCCGCCACCGGCGCCGTGTCGTCCGGCGTCGA 2623 29 100.0 32 ............................. CTGGTCGATGTTCTTGGTGTAGCTCATGTGGT 2684 29 100.0 32 ............................. TCCGTCGTGATCGACGTGTGGCGCAAGGGCAT 2745 29 100.0 33 ............................. TCGGTGACGGCCCGAGCGGCGGCCTGCTCCGCC 2807 29 100.0 32 ............................. CTACGACCTGCCCGTGCTGTCCTTCAGGGGAG 2868 29 100.0 32 ............................. GTGGTGAGGCGGAGGCGGCCGTCACCGTGGTC 2929 29 100.0 32 ............................. TCCGGTCCGCTGTCACCCCTTGAGGCGACGGC 2990 29 100.0 32 ............................. GGGCTGTGACGACCGTCGACACCGAGGTCGGG 3051 29 100.0 32 ............................. AACTTGTCCTTGGAGTCGCCGGTGTACGTCTG 3112 29 100.0 32 ............................. CGTGCGGTGGTCCCGGACTCGGGTGGCGAGGT 3173 29 100.0 32 ............................. CAACAGGACGCGGCGGATGACGGTCAGGCTGA 3234 29 100.0 32 ............................. GACGGTCCGCCAGCCGGGCCGGGTGTCGATCT 3295 29 100.0 32 ............................. CCAGGTGAGCATCCCGCCAACCGGAGCCCGGT 3356 29 100.0 32 ............................. CTGTCCAGGTCCCCGGCCGAGGGCGCGAACGT 3417 29 100.0 32 ............................. CTTCACGACCTCGCTCGGCTGAGGGATGATGG 3478 29 100.0 32 ............................. CACCCAGGCGAGCCGGGGCGTCGCCGCACCAC 3539 29 100.0 32 ............................. GCCTGGACGACTTCGTCGCTGCGGGGCGGGAC 3600 29 96.6 32 ...........T................. GCCGCCGTCAGGCTCGCTACCTGGCGCTCACC 3661 29 100.0 32 ............................. AACGCCCGGCTTGACGTGACCGTGCCCGCGAC 3722 29 100.0 32 ............................. CGCATCGTGAAGGGCTTGGTGCCGTGGTCCTG 3783 29 100.0 32 ............................. GCGTCTGCGGGGGCGGCGAACGGCACGTCGAC 3844 29 96.6 32 ............................A CCCACGCCTGGGGCGGGGCGATCGACACCTGC 3905 29 100.0 32 ............................. ATGCCTGCGCGGGGCTGGACGGACCTTGAGGT 3966 29 96.6 32 ..............T.............. GCGTTCGGTCAGTTCAAGGACACCCCCGGCCA 4027 29 100.0 32 ............................. CGCCTGGTGCGCGTGCGGCTGGACCCGCACCG 4088 29 100.0 32 ............................. GACGGTGCCGACATGGAGCGCGTGACGGATGG 4149 29 100.0 32 ............................. GTGTCGAGGCTCTCGTTCAGCTCTGCCCGGCG 4210 29 100.0 32 ............................. CCGCAGGGATGAGGAGGCTTGCCCCCACCTTC 4271 29 100.0 32 ............................. CAGTGGGACCCGCAGCTCTACGCCCCGCTCTC 4332 29 100.0 32 ............................. CAACCGCACCGGCTTCTGCACCGCCTGCGGCA 4393 29 100.0 32 ............................. GCCGGCCTCCTCGCCCCCGGCGCGATGGGCAA 4454 29 100.0 32 ............................. GTGGTCCAGATCAGCGATCCGATCGAGAGAAG 4515 29 100.0 32 ............................. CTTCCCGGCCCGGGTGGCCGGGTCGGCCGGGT 4576 29 75.9 0 .....................CCG.TAGT | ========== ====== ====== ====== ============================= ======================================= ================== 48 29 99.2 32 GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Left flank : CCGCCATACATCGCGTCCCCGTCCACCACCTTGAACGCCTCCGGGACCTTCACCACGAACGGCGGCGTGATCTTCCCAAGGTCATGAAGCCCCGCCCAAAACCCCGTCACCAACCTCGCCTCCGCCACCGACAGCCCCAACTCAGCCGCGATCCGCCGGCGCATCCCTTCGCTCAACACCTCGTCCCACAACACGAGGAACACCGCAGCCGAGTCCAGCAAATGACAGATCAACGGATACAGGCCAGGAAGCCCATGCTCTTTCCCCCAGAACCGGACATCCAGCGCGAGGCGCTCACCATTCGACATGAGGGCGTCATAACACCCCTCACCGACAACCCCTCCTGACCTGCAGTTACACATGGCTAGCCGCCCCCGGCCATCCGCAAAATCCGCGATAAGGTCCGCTACGTGACCCATCCCCAACCCACGCGCCCCTCCCAGCCATCAGCCTTCGTTCAAGAGATTGCAAAGGCCCTATAACGCCGCAGGTCAGTAAGG # Right flank : TCGCTCCCTGCGGGGTTCAGCTGCGGTCCGGTTCAGGCTGCCATTTGCAGTTCGGTGCGGGTTCGCTGGACAAGCCCCCGGACGGCTGGCTCACGCCGCCACGGGGCGAGGGCGGCGTTGAACTCACGGACGTAGTCCAGGGCCCGGGTCGACTGGACGCGGGCGAGGATATCGACGGCACGGTGGCCGAACCGTAAGCCTTGGTCGAGGTCCTTGGCCTGGAGGTGGGCGGTCCCGACGATGGCCAGGCGCATGCCGACCGAGCGGGTGAACACGCCCGGCTGCATGGCGGCGGCCTGCGCGTTCCAGGCCAGTGCGGCCTTGGGGTTCTTGAGGTCGCGGAAGACCTCGGCGGCGTCGGCGGAGAGCCGGGCGTGGTGGTAGAAGTCGATCCAGGCGGGTTCTGCGGTGTTGTCGCGGGTCTGGTCGAGGAGGCTCTCGGAGGAGGCGAGCGCGGCGGAGGCGGCCTTGGGGTTGTTGTCGCGGGCGTGGGCTCTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCTCCGCGCGAGCGGAGGTACCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51198-51348 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKNY01000024.1 Streptomyces albidoflavus strain CR10 Scaffold11_1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ===================================== ================== 51198 26 96.2 36 .......................G.. CTTGACCTGAACGGTCGAGCGATGCGGCACCACATC 51260 26 100.0 37 .......................... GGTGACCGGCACGGTCGGACGTGTCCGCACCAAAACC 51323 26 96.2 0 ........................C. | ========== ====== ====== ====== ========================== ===================================== ================== 3 26 97.5 37 CAGCCCGGCCGGCGCTTGAGGCCATC # Left flank : TACGGGTCCGAGACGCTGGCCGACGTCGAGCGGCTCTGCGCCGAGGAGGCGGCGGCGCTCGGCGGCACCGTCGACCTGCGCCAGTCCAACCACGAGGGCGTCCTGGTCGACTGGATCCACGAGGCCCGCACCGGCGCGGCCGGCCTCGTCGTCAACCCCGCCGCCTACTCGCACACCTCCGTCGCCCTGCTCGACGCGCTCAACGCCTGCGACGGGCTCCCGGTGATCGAGGTCCACATCTCCAACATCCACCGCCGCGAACAGTTCCGGCACCACAGCTACGTCTCCCTGCGCGCCGACGGCGTCATCGCCGGCTGCGGCATCCAGGGCTACGCGTTCGCCGTCCGCCGGATCGCGACCTTGCTGGCCGACCAGAGCTGACCCGGGCGACCTCCCGCCCGGGGCATCTCCAGCCGGTCACCTCCGGCCCGGGCCACCTCCGGCCGGTCACCTCCGGCACGGGCCACCTTCAGCCCGGCCACATCCCGCCTGGCCACCTT # Right flank : CCGGACCGCCCGGGCGGAAGACTCGCCGCTCCGCGGCTCATCGGCCTCAATCGCCGGCCGGGCTGTAGGTCCCGGCCGGGTTGTAGGTCCCGGCCGGACTCACCAACCCCGCTCGCGCCAGGCGGCCAGGTGCGGCCGCTCCGCCCCCAGCGTGGTGTCGTCCCCGTGCCCGGGGTAGACCCACGTCTCGTCCGGCAGCGCAGCAAAGATCTTGGTCTCCACGTCACCCAGCAGCTGGGCGAAGGCATCCGGGTCCTGGTGGGTGTTGCCCACCCCTCCGGGGAAGAGGCAGTCCCCGGTGAAGACGTGCGGGTGGCCGTGCGGGTCGTCGTAGACCAGGGCGATCGAGCCGGGCGTGTGCCCGACCAGGTGGAGCACGGTCAGCTCCACCCGGCCGACCCGCACGGTGTCCCCGTCGTCCAGCAGCACATCGGTGGGAACCGGAATCCCCTCCGCGTCGTACCGCCCGGCCTGGGTCCGCGCCCCGGTCGCGGCCACCA # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 4335-3393 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKNY01000001.1 Streptomyces albidoflavus strain CR10 Scaffold18_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4334 29 100.0 32 ............................. CGGCCGTCGAGGGTGGGGCAGGGCCGGGTGTC 4273 29 100.0 32 ............................. CGACTGCGCACGCGCCACCGTGTTACGCACGA 4212 29 100.0 32 ............................. TTGGGGTGGGTGGCCGGGAGGCCGGGGTGCTT 4151 29 100.0 32 ............................. GCGCCGCGGGCGGTGGACTGGTTCATGGGCGG 4090 29 100.0 32 ............................. GTGCTGGGGGCCTTGGTGCGGCGGACGGTGCC 4029 29 100.0 32 ............................. TCGCCGGCCCCCGTGGTCCAGCGCAGCCAGGT 3968 29 100.0 32 ............................. TCGTGCAGGTGGGGCAGGTGCGGCGGGCGCGC 3907 29 100.0 32 ............................. TCGGACGTGGCGCTCGCTCTGACGACTCGTCT 3846 29 100.0 32 ............................. CGCGGGCGGGGTGCGATCGTCATGGCGGAACG 3785 29 100.0 32 ............................. GCCGGGCCGGCCGCGACGGCGAGCTGGCCGAA 3724 29 100.0 32 ............................. TGGCTGACTCGTGCCCCGATCCGGTAGGGGTG 3663 29 100.0 32 ............................. CCTGCGGTACCGGCCACGATGCGGTTCATGTA 3602 29 100.0 32 ............................. CTCATGGGCCTCGACATGCCCGTCCACGCCGA 3541 29 96.6 32 .............A............... GTGGAGGCGGCGGTGCAGTCGACGTGGGGTAA 3480 29 100.0 32 ............................. CTGGCCCGCGCTGACAGCCACCTCGCCGACCT 3419 27 82.8 0 ...T........--.............AT | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.7 32 GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Left flank : CCGGCTGCTCCCGCGCATCGTGGGAGACATCCAGTCCTTGTTCCAGCCTGGCTTCACCGCCCCGGATGACCTGGAAGAACAGGTCGTCGACCTGTGGGACCCCGAGACCGGAAACATCCCAGGCAGCCGAAACCACGCCCCCACCTGACATCGCGAAAGACGCCATGCCGAACATGACCGTCATCAGCGCCACCGCCGTTCCAGCACACCTTCGAGGCGCTCTGAGCCGCTGGCTGCTCGAAATCACACCATCTCTCTACATCGGAACCATCTCTGCCAGAGTCCGAGAAGAGCTATGGAACAAGACCACCGCGAGCATCACTGACGGAAACGCCGTCCTCGCCTACCCATCGAACTCAGAACAGGGTTACACCGTCCGCACCGCAGGTCCCCAACGGCGCTCCCCCGTCGACTTCGAGGGCCTCGTTCTCATGGCCTTCAAGGACACCGAAAGAAGTAAAGAAACTGCAAAGAGCGGGTGACGCCGCAGGTCACGAAGG # Right flank : GCCAGGCCAGAACCTCCAAGGCATCCTTTCTGCACGTGCGGGGTAATTCAGGCGGGTCTGTATGTGACGGGCTGCGCACTCGTTCGCTCCGGGCATGCGGAGTGCTTCGGTATCAGGGGCCGCCCCAGCGCGACATCATGTCGGCTCCGCGTCTGCCGGGCTGTTCCGCCATCAACCGCCGCGTTTCACACGCCGTTGGCCCCCACCTTCTTTTCTAGGGGGCTGCGATCCGGCTGAAGGGCACCGCTCGCACGGCAGCCCGCTGCCTGAGAGGGCCGGTTGATGAGTTTCCTGTGCTGGCTTGCCCTTGCCGTGTTGCCTGACTTCGGGCAAGCCTGCGGCAACTGCTTCTGTGGTGGTGGGGCAAGCCTTTGGGCAAGCGGCAGTGTTGAGAGTGAGGGGCACATCGTTCTCCAGGAGGTGTGCCGTGCACTACGGACCGACACAGACGCTGTACGCCAAGACGCTGACCACGATCAGGGCGGCCACCACACGACCGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTACCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //