Array 1 1401991-1399949 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOSM02000004.1 Vibrio cholerae strain FDAARGOS_101 unitig_8_quiver_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1401990 28 100.0 33 ............................ TTGATCGCTCTGAAATTGTGACTTGTTTTGTTA 1401929 28 100.0 33 ............................ TAGATCTTAATTGTTCGCGTTGAATGGGAAATT 1401868 28 100.0 33 ............................ CAGATTGTAGATAAGCAGGAGACTGCCCACCAG 1401807 28 100.0 33 ............................ CGCTTCTGTAGAGGTGATGGGTCCAAAGATGTT 1401746 28 100.0 33 ............................ TACATTCGTGATATCAGCGGATGCGCTTGGTCA 1401685 28 100.0 33 ............................ CAAGGAAATTTGCTACCAAAAGACGTGATCGAG 1401624 28 100.0 33 ............................ CCAAGCAGCAATAAAAATGGAGAGCAATCCTAT 1401563 28 100.0 33 ............................ CCAAAGCAATTCAACAGAGGCCATCAATCGCCT 1401502 28 100.0 33 ............................ TATTGCATTGAATTGCCCCACTCTTTGACCACA 1401441 28 100.0 33 ............................ TCAAAATACTTCTCGCACATCCTGCAAGCGCTG 1401380 28 100.0 33 ............................ CCGAATACAACGGGCAAGCCTGCGCTAACGTTC 1401319 28 100.0 33 ............................ CGGTTGATAAAACGCTGCGTAAGTTTTTCGAAG 1401258 28 100.0 33 ............................ TAAAACTTCATAGATTGTTGCCTCCATTGTTTC 1401197 28 100.0 33 ............................ TACGTCAACGGACAAACCAAAACCGAATGGAAG 1401136 28 100.0 33 ............................ TAAGTAACGCTGCTACTGCCCTGAGCTAGTACC 1401075 28 100.0 33 ............................ TACTGGCCGATGAGGTGGACCGCTACGGCTTCA 1401014 28 100.0 33 ............................ TCACCCAGCACATTACCACCCATGATCAGCGTT 1400953 28 100.0 33 ............................ CGAGTGGGTTTAGGTTGTAGGTTGCACATACGC 1400892 28 100.0 33 ............................ TTCGAAAAGCTATTAGGCGGCATAACCACAGTT 1400831 28 100.0 33 ............................ CAACAAACCAGCCACTTTGCATTTTGTAGCAGA 1400770 28 100.0 33 ............................ TGGAAGTTATTTATATTGGACCTGATTGCACGG 1400709 28 100.0 33 ............................ TACTTTGGGCCTTGTTTTATGTGCCAGTGCCCG 1400648 28 100.0 33 ............................ CCACTATTTCAATAATCGGCGTAGCTCCGACTG 1400587 28 100.0 33 ............................ CGTAATCTTCTTTGTCTGAGTAATCCAAAATAC 1400526 28 100.0 33 ............................ TCATGGCAGCGATATTTGTTTTACCCTTCATAC 1400465 28 100.0 33 ............................ CATCTGGAACGCACTCAAGCGGCAATCCGAAGT 1400404 28 100.0 33 ............................ CAGCAATGTGTTATCCAATGCGAAAGCGCCGTT 1400343 28 100.0 33 ............................ TATTTTGCGTATCACCGAAGCGCTGTAGGTTAT 1400282 28 100.0 33 ............................ TACGTCCAGCATTACCGCCGCGCCGTGTCGAGT 1400221 28 100.0 33 ............................ TCCTCCCTGCTCATATGCCGTTAAAACTTTCTC 1400160 28 100.0 33 ............................ TCTGATGCGGCAAGCTCTTTCGCTAGCTCGATT 1400099 28 100.0 33 ............................ TACAACATCCATGCAAGCGGCAAAGAATACAAA 1400038 28 100.0 33 ............................ CTCTTTAATCGAATTCCATAACGGTGACGTTAA T [1400017] 1399976 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.2 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACACGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATCTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : GTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATGGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTAGCTATAAACCTAAACCAGAGGGGATTTGTGACAACAGCTACGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGACTGCGTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.40,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //