Array 1 62882-61405 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYHK01000005.1 Salmonella enterica strain BCW_5886 NODE_5_length_87706_cov_3.24812, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 62881 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 62820 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 62759 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 62698 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 62636 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 62575 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 62514 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 62453 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 62392 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 62331 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 62270 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 62209 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 62148 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 62087 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 62026 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 61965 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 61903 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 61800 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 61739 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 61678 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 61617 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 61556 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 61495 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 61434 29 96.6 0 A............................ | A [61407] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 80995-79014 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYHK01000005.1 Salmonella enterica strain BCW_5886 NODE_5_length_87706_cov_3.24812, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 80994 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 80933 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 80872 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 80811 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 80750 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 80689 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 80628 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 80567 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 80506 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 80445 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 80384 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 80323 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 80262 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 80201 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 80140 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 80079 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 80018 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 79957 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 79896 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 79835 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 79774 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 79713 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 79652 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 79591 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 79529 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 79468 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 79407 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 79346 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 79285 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 79224 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 79163 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 79102 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 79041 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //